Wall clock time and date at job start Tue Mar 31 2020 05:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47331 * 2 1 4 4 C 1.53005 * 109.47344 * 174.80130 * 3 2 1 5 5 H 1.08998 * 109.58238 * 301.45272 * 4 3 2 6 6 C 1.53195 * 109.58563 * 61.87758 * 4 3 2 7 7 C 1.53035 * 109.30950 * 174.42168 * 6 4 3 8 8 C 1.53037 * 109.54143 * 298.63476 * 7 6 4 9 9 C 1.52765 * 109.38103 * 61.24466 * 8 7 6 10 10 N 1.46924 * 109.58509 * 181.16848 * 4 3 2 11 11 C 1.34775 * 120.63152 * 6.58299 * 10 4 3 12 12 O 1.21278 * 120.00187 * 354.86532 * 11 10 4 13 13 C 1.50699 * 119.99744 * 174.87033 * 11 10 4 14 14 C 1.53004 * 109.46851 * 179.97438 * 13 11 10 15 15 C 1.53007 * 109.46951 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47185 * 180.02562 * 15 14 13 17 17 C 1.50695 * 109.47392 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99658 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00320 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00240 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99751 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46981 * 89.99691 * 21 19 17 23 23 H 1.48494 * 109.47051 * 209.99549 * 21 19 17 24 24 H 1.48497 * 109.47230 * 329.99886 * 21 19 17 25 25 H 1.08999 * 109.47416 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47090 * 300.00374 * 1 2 3 27 27 H 1.08998 * 109.47582 * 59.99636 * 1 2 3 28 28 H 1.09000 * 109.47110 * 239.99984 * 2 1 3 29 29 H 1.09002 * 109.47128 * 119.99789 * 2 1 3 30 30 H 1.08997 * 109.47061 * 54.79681 * 3 2 1 31 31 H 1.09007 * 109.46701 * 294.79584 * 3 2 1 32 32 H 1.08992 * 109.49862 * 294.37629 * 6 4 3 33 33 H 1.08999 * 109.49631 * 54.44024 * 6 4 3 34 34 H 1.08997 * 109.46187 * 58.65929 * 7 6 4 35 35 H 1.08998 * 109.46008 * 178.63010 * 7 6 4 36 36 H 1.09000 * 109.49708 * 181.31322 * 8 7 6 37 37 H 1.09003 * 109.50256 * 301.38539 * 8 7 6 38 38 H 1.09000 * 109.50963 * 185.70591 * 9 8 7 39 39 H 1.08992 * 109.43777 * 65.42204 * 9 8 7 40 40 H 1.09004 * 109.47417 * 59.99997 * 13 11 10 41 41 H 1.09001 * 109.47306 * 299.99556 * 13 11 10 42 42 H 1.08999 * 109.47343 * 299.99687 * 14 13 11 43 43 H 1.08996 * 109.47549 * 60.00214 * 14 13 11 44 44 H 1.08999 * 109.46760 * 299.99945 * 15 14 13 45 45 H 1.08996 * 109.46900 * 59.99717 * 15 14 13 46 46 H 1.09001 * 109.46611 * 299.99790 * 16 15 14 47 47 H 1.08994 * 109.47185 * 59.99596 * 16 15 14 48 48 H 0.97001 * 120.00643 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5644 1.4445 0.1307 5 1 3.8529 0.9358 1.0505 6 6 4.1840 0.7267 -1.0726 7 6 5.7077 0.8529 -1.0076 8 6 6.1021 2.3303 -1.0709 9 6 5.5042 3.0663 0.1268 10 7 4.0545 2.8293 0.1591 11 6 3.1906 3.8626 0.2083 12 8 1.9972 3.6592 0.1356 13 6 3.7076 5.2706 0.3535 14 6 2.5292 6.2461 0.3825 15 6 3.0541 7.6758 0.5293 16 6 1.8758 8.6512 0.5590 17 6 2.3927 10.0594 0.7029 18 1 3.4555 10.2404 0.7672 19 6 1.5090 11.1165 0.7525 20 7 1.9602 12.3454 0.8786 21 14 -0.3291 10.8033 0.6405 22 1 -0.8807 10.6009 2.0043 23 1 -0.9924 11.9708 0.0065 24 1 -0.5754 9.5891 -0.1783 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6026 1.9825 0.8397 31 1 1.7547 1.9287 -0.9330 32 1 3.9049 -0.3267 -1.0510 33 1 3.8197 1.1808 -1.9941 34 1 6.0685 0.4204 -0.0745 35 1 6.1523 0.3223 -1.8496 36 1 7.1883 2.4181 -1.0481 37 1 5.7208 2.7696 -1.9927 38 1 5.6977 4.1348 0.0310 39 1 5.9562 2.6919 1.0452 40 1 4.3552 5.5088 -0.4904 41 1 4.2734 5.3561 1.2812 42 1 1.9638 6.1606 -0.5454 43 1 1.8813 6.0082 1.2261 44 1 3.6198 7.7616 1.4570 45 1 3.7018 7.9134 -0.3145 46 1 1.3097 8.5654 -0.3686 47 1 1.2284 8.4133 1.4030 48 1 1.3385 13.0892 0.9131 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588677973.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:09 Heat of formation + Delta-G solvation = -67.202936 kcal Electronic energy + Delta-G solvation = -22625.821793 eV Core-core repulsion = 19486.499451 eV Total energy + Delta-G solvation = -3139.322342 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.70820 -37.68973 -35.54850 -34.82249 -33.10311 -32.51601 -31.36481 -29.96874 -27.29918 -25.92448 -24.69977 -23.26656 -21.91169 -21.13833 -20.77246 -19.97021 -18.87433 -16.82384 -16.49728 -16.15624 -15.88212 -15.25029 -14.82272 -14.62481 -14.22546 -14.13666 -13.92285 -13.62126 -13.49919 -13.22481 -12.71196 -12.61190 -12.33446 -12.08360 -11.97775 -11.78280 -11.73052 -11.41413 -11.32618 -11.25773 -11.11767 -10.99608 -10.69785 -10.62104 -10.59129 -10.48749 -9.83949 -9.63119 -9.52380 -9.10643 -8.94496 -8.64159 -8.47976 -5.99193 -3.96544 2.68981 2.86692 3.36517 3.43425 3.49690 4.32641 4.45581 4.51384 4.51492 4.69016 4.78256 4.87065 4.96174 4.98225 5.07589 5.20283 5.22410 5.28063 5.33315 5.36255 5.40656 5.48007 5.52667 5.60392 5.69333 5.70175 5.75660 5.77966 5.81675 5.85158 5.99193 6.05995 6.06954 6.17858 6.28793 6.30517 6.45611 6.64314 6.71297 6.84808 7.01524 7.35615 7.40527 7.53182 7.86480 8.25611 8.59951 9.05885 9.64315 11.14375 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.021035 B = 0.003274 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.768016 B = 8550.613100 C = 9712.394145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C -0.108 4.108 4 C 0.147 3.853 5 H 0.067 0.933 6 C -0.132 4.132 7 C -0.120 4.120 8 C -0.137 4.137 9 C 0.106 3.894 10 N -0.617 5.617 11 C 0.514 3.486 12 O -0.528 6.528 13 C -0.140 4.140 14 C -0.105 4.105 15 C -0.102 4.102 16 C -0.015 4.015 17 C -0.519 4.519 18 H 0.071 0.929 19 C 0.064 3.936 20 N -0.907 5.907 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.264 1.264 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.015 0.985 47 H 0.011 0.989 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.509 -27.897 -2.882 29.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.170 4.170 3 C -0.146 4.146 4 C 0.044 3.956 5 H 0.085 0.915 6 C -0.171 4.171 7 C -0.158 4.158 8 C -0.175 4.175 9 C -0.017 4.017 10 N -0.351 5.351 11 C 0.304 3.696 12 O -0.405 6.405 13 C -0.180 4.180 14 C -0.143 4.143 15 C -0.140 4.140 16 C -0.052 4.052 17 C -0.557 4.557 18 H 0.089 0.911 19 C -0.136 4.136 20 N -0.546 5.546 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.189 1.189 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.034 0.966 47 H 0.029 0.971 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.806 -27.804 -2.904 28.772 hybrid contribution -0.723 -0.039 -0.057 0.726 sum 6.082 -27.843 -2.961 28.653 Atomic orbital electron populations 1.21706 0.95778 1.00938 1.02168 1.21733 0.96249 0.97843 1.01182 1.22193 0.92257 0.94823 1.05289 1.21315 0.95311 0.81444 0.97546 0.91510 1.22044 0.95397 1.00766 0.98870 1.21518 0.95885 0.96289 1.02069 1.21856 1.00786 0.95955 0.98905 1.21660 0.80001 1.01594 0.98420 1.48239 1.06501 1.05959 1.74446 1.21017 0.86362 0.87054 0.75201 1.90729 1.16042 1.84662 1.49022 1.21844 1.01173 0.91317 1.03675 1.21478 0.95782 0.94279 1.02761 1.21473 0.99506 0.92245 1.00766 1.19570 0.94294 0.95062 0.96323 1.21191 0.95298 0.89337 1.49873 0.91124 1.25041 0.98911 0.95041 0.94622 1.69918 1.34894 0.98622 1.51163 0.86773 0.85846 0.77969 0.78716 1.20315 1.21461 1.18900 0.93231 0.92687 0.92736 0.92466 0.92615 0.89260 0.90785 0.90812 0.91495 0.91859 0.91759 0.90611 0.91378 0.89172 0.91469 0.89261 0.89192 0.91866 0.91845 0.92931 0.92918 0.96650 0.97076 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.15 0.37 -1.02 16 2 C -0.13 -1.19 5.48 -26.73 -0.15 -1.34 16 3 C -0.11 -1.23 3.13 -26.73 -0.08 -1.32 16 4 C 0.15 1.43 3.00 -67.60 -0.20 1.22 16 5 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 6 C -0.13 -1.04 4.90 -26.61 -0.13 -1.17 16 7 C -0.12 -0.78 5.88 -26.69 -0.16 -0.93 16 8 C -0.14 -0.91 6.06 -26.83 -0.16 -1.08 16 9 C 0.11 0.83 6.30 -3.93 -0.02 0.80 16 10 N -0.62 -6.55 2.98 -165.48 -0.49 -7.04 16 11 C 0.51 6.99 7.61 -10.99 -0.08 6.91 16 12 O -0.53 -8.78 11.39 5.56 0.06 -8.72 16 13 C -0.14 -1.83 4.11 -27.88 -0.11 -1.94 16 14 C -0.10 -1.78 4.50 -26.73 -0.12 -1.91 16 15 C -0.10 -2.03 5.15 -26.73 -0.14 -2.17 16 16 C -0.02 -0.38 4.04 -27.89 -0.11 -0.49 16 17 C -0.52 -15.21 9.66 -34.44 -0.33 -15.54 16 18 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 19 C 0.06 1.93 5.47 -17.82 -0.10 1.84 16 20 N -0.91 -28.57 13.96 55.43 0.77 -27.80 16 21 Si 0.88 22.51 27.47 -169.99 -4.67 17.84 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.46 6.90 -51.93 -0.36 0.11 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.09 1.25 6.35 -51.93 -0.33 0.92 16 31 H 0.07 1.00 7.13 -51.92 -0.37 0.63 16 32 H 0.07 0.50 6.92 -51.93 -0.36 0.14 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.66 5.96 -51.93 -0.31 0.35 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 1.02 7.47 -51.93 -0.39 0.64 16 41 H 0.09 1.04 8.12 -51.93 -0.42 0.62 16 42 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 43 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 47 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 48 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 363.71 15.07 5.48 5.48 Total: -1.00 -32.71 363.71 -9.61 -42.32 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -9.23 Total: -3.95 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: -1.54 Total: -18.13 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.28 Total: -34.84 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.06 Total: -8.72 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.67 Total: 17.84 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.71 -9.61 -42.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588677973.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.887 kcal (2) G-P(sol) polarization free energy of solvation -32.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds