Wall clock time and date at job start Tue Mar 31 2020 05:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46866 * 2 1 4 4 C 1.52997 * 109.46976 * 185.07086 * 3 2 1 5 5 H 1.09002 * 109.58370 * 61.34262 * 4 3 2 6 6 C 1.53185 * 109.70629 * 300.98711 * 4 3 2 7 7 C 1.53041 * 109.31616 * 185.50456 * 6 4 3 8 8 C 1.53044 * 109.53347 * 61.36744 * 7 6 4 9 9 C 1.53623 * 109.24145 * 298.51048 * 8 7 6 10 10 N 1.46924 * 109.58662 * 181.62445 * 4 3 2 11 11 C 1.34778 * 120.63200 * 353.51905 * 10 4 3 12 12 O 1.21279 * 119.99946 * 354.49557 * 11 10 4 13 13 C 1.50698 * 120.00109 * 174.49460 * 11 10 4 14 14 C 1.52998 * 109.47135 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47256 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.47256 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47135 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00245 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99986 * 179.97438 * 17 16 15 20 20 N 1.31509 * 119.99995 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99913 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47025 * 89.99973 * 21 19 17 23 23 H 1.48499 * 109.46659 * 210.00354 * 21 19 17 24 24 H 1.48506 * 109.47041 * 329.99888 * 21 19 17 25 25 H 1.08998 * 109.47351 * 300.00342 * 1 2 3 26 26 H 1.08999 * 109.47221 * 60.00524 * 1 2 3 27 27 H 1.09003 * 109.46993 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47351 * 239.99658 * 2 1 3 29 29 H 1.09004 * 109.46782 * 119.99350 * 2 1 3 30 30 H 1.08996 * 109.47416 * 65.07427 * 3 2 1 31 31 H 1.09003 * 109.46962 * 305.07117 * 3 2 1 32 32 H 1.09002 * 109.49704 * 305.46275 * 6 4 3 33 33 H 1.09001 * 109.49910 * 65.52374 * 6 4 3 34 34 H 1.09001 * 109.46289 * 181.38312 * 7 6 4 35 35 H 1.08994 * 109.45875 * 301.36339 * 7 6 4 36 36 H 1.08997 * 109.50061 * 58.58987 * 8 7 6 37 37 H 1.08999 * 109.49395 * 178.65322 * 8 7 6 38 38 H 1.09006 * 109.73904 * 295.11893 * 9 8 7 39 39 H 1.09000 * 109.66477 * 174.55277 * 9 8 7 40 40 H 1.08996 * 109.47458 * 59.99838 * 13 11 10 41 41 H 1.09007 * 109.47345 * 299.99907 * 13 11 10 42 42 H 1.08997 * 109.47230 * 299.99661 * 14 13 11 43 43 H 1.08996 * 109.47596 * 59.99843 * 14 13 11 44 44 H 1.08997 * 109.46823 * 300.00032 * 15 14 13 45 45 H 1.09006 * 109.47278 * 59.99796 * 15 14 13 46 46 H 1.08997 * 109.46781 * 300.00072 * 16 15 14 47 47 H 1.08996 * 109.47137 * 59.99692 * 16 15 14 48 48 H 0.97000 * 120.00121 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5646 1.4444 -0.1275 5 1 3.8530 0.9792 -1.0701 6 6 4.1815 0.6665 1.0391 7 6 5.7058 0.7895 0.9797 8 6 6.1062 2.2604 1.1147 9 6 5.5113 3.0566 -0.0567 10 7 4.0604 2.8270 -0.0887 11 6 3.2008 3.8650 -0.0880 12 8 2.0115 3.6675 -0.2202 13 6 3.7173 5.2710 0.0770 14 6 2.5442 6.2526 0.0431 15 6 3.0686 7.6801 0.2113 16 6 1.8954 8.6616 0.1780 17 6 2.4120 10.0677 0.3430 18 1 3.4710 10.2436 0.4604 19 6 1.5324 11.1296 0.3442 20 7 0.2428 10.9154 0.2009 21 14 2.1728 12.8725 0.5481 22 1 2.4771 13.4473 -0.7868 23 1 1.1422 13.7028 1.2215 24 1 3.4084 12.8527 1.3718 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.7528 1.9295 0.9319 31 1 1.6043 1.9819 -0.8411 32 1 3.8198 1.0770 1.9818 33 1 3.8977 -0.3834 0.9667 34 1 6.1484 0.2165 1.7946 35 1 6.0645 0.4017 0.0264 36 1 5.7264 2.6559 2.0567 37 1 7.1928 2.3448 1.0964 38 1 5.9553 2.7201 -0.9937 39 1 5.7101 4.1191 0.0834 40 1 4.4082 5.5019 -0.7338 41 1 4.2358 5.3580 1.0319 42 1 2.0254 6.1659 -0.9115 43 1 1.8537 6.0218 0.8542 44 1 3.5871 7.7665 1.1661 45 1 3.7594 7.9114 -0.5996 46 1 1.3765 8.5753 -0.7766 47 1 1.2050 8.4302 0.9891 48 1 -0.3759 11.6625 0.2014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588677976.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:11 Heat of formation + Delta-G solvation = -70.858568 kcal Electronic energy + Delta-G solvation = -22572.042853 eV Core-core repulsion = 19432.561990 eV Total energy + Delta-G solvation = -3139.480862 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.63796 -37.62476 -35.46752 -34.70337 -33.04749 -32.54195 -31.26707 -29.58096 -27.17566 -25.68284 -24.66061 -23.30806 -22.04224 -21.10156 -20.76421 -19.90869 -18.84845 -16.74476 -16.19569 -16.09480 -15.66716 -15.17787 -14.77350 -14.55018 -14.43513 -14.11545 -13.86159 -13.56868 -13.42097 -13.17850 -12.67076 -12.52327 -12.13092 -12.03286 -11.70254 -11.67804 -11.57021 -11.33496 -11.27684 -11.20710 -10.96697 -10.95851 -10.63814 -10.57798 -10.47699 -10.46228 -10.34767 -9.58133 -9.28064 -9.00409 -8.81440 -8.62765 -8.28602 -5.93371 -3.95793 2.75334 2.92330 3.35185 3.41114 3.44346 4.36720 4.49345 4.50726 4.55447 4.71565 4.82313 4.92782 5.00083 5.02083 5.12184 5.23962 5.27346 5.37403 5.39240 5.41998 5.45235 5.51698 5.56360 5.64179 5.72551 5.73806 5.80210 5.81865 5.86407 5.92690 6.02282 6.12132 6.17537 6.31419 6.33732 6.37570 6.58994 6.70163 6.87745 7.05232 7.22903 7.42103 7.76407 7.92844 8.08356 8.32708 8.50220 9.11995 9.67709 11.17978 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022849 B = 0.003021 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.129068 B = 9264.944537 C =10309.763888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C -0.112 4.112 4 C 0.148 3.852 5 H 0.066 0.934 6 C -0.132 4.132 7 C -0.120 4.120 8 C -0.136 4.136 9 C 0.106 3.894 10 N -0.618 5.618 11 C 0.514 3.486 12 O -0.526 6.526 13 C -0.140 4.140 14 C -0.102 4.102 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.015 0.985 47 H 0.015 0.985 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.308 -24.416 0.379 26.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C -0.150 4.150 4 C 0.045 3.955 5 H 0.084 0.916 6 C -0.171 4.171 7 C -0.158 4.158 8 C -0.175 4.175 9 C -0.017 4.017 10 N -0.353 5.353 11 C 0.304 3.696 12 O -0.403 6.403 13 C -0.180 4.180 14 C -0.140 4.140 15 C -0.148 4.148 16 C -0.017 4.017 17 C -0.558 4.558 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.034 0.966 47 H 0.034 0.966 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.491 -24.414 0.302 26.574 hybrid contribution 0.490 0.954 0.159 1.084 sum 10.981 -23.460 0.461 25.907 Atomic orbital electron populations 1.21713 0.95761 1.00926 1.02228 1.21719 0.96249 0.97746 1.01153 1.22202 0.92365 0.95047 1.05365 1.21280 0.95235 0.81360 0.97663 0.91625 1.22045 0.95382 1.00488 0.99140 1.21521 0.95890 0.96353 1.01991 1.22003 1.00690 0.95727 0.99041 1.21836 0.80002 1.01369 0.98476 1.48257 1.06464 1.05906 1.74665 1.21043 0.86307 0.87021 0.75219 1.90715 1.16278 1.84816 1.48469 1.21855 1.01313 0.91395 1.03413 1.21445 0.95623 0.94133 1.02814 1.21646 1.00225 0.93005 0.99884 1.19089 0.92695 0.92633 0.97276 1.21289 0.93309 0.91795 1.49439 0.92780 1.25043 0.94888 0.99145 0.95501 1.69974 1.01682 1.31242 1.50576 0.86616 0.78553 0.84782 0.78167 1.20716 1.21260 1.19926 0.92727 0.92622 0.93249 0.92592 0.92505 0.91246 0.88588 0.91504 0.90779 0.91782 0.91900 0.91305 0.90770 0.91460 0.89171 0.89428 0.89375 0.91847 0.91875 0.93566 0.93550 0.96616 0.96614 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 37.16 0.37 -1.08 16 2 C -0.13 -1.23 5.41 -26.73 -0.14 -1.38 16 3 C -0.11 -1.34 3.18 -26.73 -0.08 -1.42 16 4 C 0.15 1.50 3.02 -67.61 -0.20 1.30 16 5 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 6 C -0.13 -1.08 4.83 -26.61 -0.13 -1.21 16 7 C -0.12 -0.81 5.88 -26.69 -0.16 -0.96 16 8 C -0.14 -0.94 6.10 -26.39 -0.16 -1.10 16 9 C 0.11 0.86 6.38 -3.49 -0.02 0.84 16 10 N -0.62 -6.87 2.97 -164.96 -0.49 -7.35 16 11 C 0.51 7.35 7.53 -10.99 -0.08 7.26 16 12 O -0.53 -9.19 11.53 5.56 0.06 -9.12 16 13 C -0.14 -1.93 4.06 -27.89 -0.11 -2.04 16 14 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 15 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 16 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 17 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 18 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.73 13.29 55.43 0.74 -26.99 16 21 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.48 6.85 -51.93 -0.36 0.13 16 30 H 0.07 0.98 7.24 -51.93 -0.38 0.60 16 31 H 0.10 1.40 6.23 -51.93 -0.32 1.08 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.52 6.87 -51.93 -0.36 0.17 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.69 5.93 -51.93 -0.31 0.38 16 40 H 0.09 1.06 7.71 -51.93 -0.40 0.66 16 41 H 0.09 1.08 7.93 -51.93 -0.41 0.67 16 42 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 43 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 367.27 15.07 5.53 5.53 Total: -1.00 -32.42 367.27 -9.97 -42.39 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -9.26 Total: -3.76 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -1.54 Total: -17.72 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.25 Total: -34.35 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.06 Total: -9.12 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.42 -9.97 -42.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588677976.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.467 kcal (2) G-P(sol) polarization free energy of solvation -32.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds