Wall clock time and date at job start Tue Mar 31 2020 05:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46873 * 2 1 4 4 C 1.53003 * 109.46904 * 240.00678 * 2 1 3 5 5 H 1.09003 * 109.58212 * 175.12142 * 4 2 1 6 6 C 1.53189 * 109.58980 * 54.84009 * 4 2 1 7 7 C 1.53042 * 109.31243 * 185.57605 * 6 4 2 8 8 C 1.53038 * 109.53630 * 61.36471 * 7 6 4 9 9 C 1.53192 * 109.31516 * 298.63381 * 8 7 6 10 10 N 1.46924 * 109.58473 * 295.54670 * 4 2 1 11 11 C 1.34777 * 120.63141 * 353.39866 * 10 4 2 12 12 O 1.21275 * 120.00192 * 354.29073 * 11 10 4 13 13 C 1.50703 * 119.99839 * 174.28851 * 11 10 4 14 14 C 1.53001 * 109.47111 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47124 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.47124 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47111 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00113 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99657 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99712 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00318 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46740 * 90.00096 * 21 19 17 23 23 H 1.48494 * 109.47336 * 210.00132 * 21 19 17 24 24 H 1.48498 * 109.46778 * 330.00517 * 21 19 17 25 25 H 1.09000 * 109.47528 * 51.99854 * 1 2 3 26 26 H 1.09002 * 109.47242 * 291.99058 * 1 2 3 27 27 H 1.09003 * 109.47069 * 171.99469 * 1 2 3 28 28 H 1.08997 * 109.47550 * 120.00068 * 2 1 3 29 29 H 1.09001 * 109.46634 * 65.16841 * 3 2 1 30 30 H 1.09001 * 109.47194 * 185.16750 * 3 2 1 31 31 H 1.08998 * 109.47425 * 305.17165 * 3 2 1 32 32 H 1.08996 * 109.49641 * 305.52671 * 6 4 2 33 33 H 1.09005 * 109.49910 * 65.58934 * 6 4 2 34 34 H 1.09002 * 109.45570 * 181.38140 * 7 6 4 35 35 H 1.08999 * 109.45728 * 301.34064 * 7 6 4 36 36 H 1.08999 * 109.49958 * 58.58708 * 8 7 6 37 37 H 1.09001 * 109.49913 * 178.68114 * 8 7 6 38 38 H 1.08997 * 109.59106 * 174.42663 * 9 8 7 39 39 H 1.08999 * 109.58651 * 294.85304 * 9 8 7 40 40 H 1.09005 * 109.47273 * 300.00160 * 13 11 10 41 41 H 1.08995 * 109.47157 * 59.99924 * 13 11 10 42 42 H 1.09005 * 109.47126 * 300.00180 * 14 13 11 43 43 H 1.09001 * 109.46828 * 59.99755 * 14 13 11 44 44 H 1.09005 * 109.47179 * 300.00041 * 15 14 13 45 45 H 1.09001 * 109.47555 * 60.00093 * 15 14 13 46 46 H 1.08991 * 109.47283 * 299.99853 * 16 15 14 47 47 H 1.09008 * 109.46989 * 60.00016 * 16 15 14 48 48 H 0.96996 * 120.00038 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 -1.2494 5 1 3.1265 -0.6472 -1.2960 6 6 1.4276 -0.0798 -2.4985 7 6 1.8301 -0.8903 -3.7327 8 6 1.2891 -2.3163 -3.6073 9 6 1.8999 -2.9831 -2.3707 10 7 1.6413 -2.1344 -1.1995 11 6 1.0496 -2.6426 -0.1004 12 8 0.9349 -1.9614 0.8965 13 6 0.5304 -4.0573 -0.1101 14 6 -0.0902 -4.3822 1.2501 15 6 -0.6167 -5.8186 1.2405 16 6 -1.2379 -6.1433 2.6005 17 6 -1.7571 -7.5580 2.5908 18 1 -1.6547 -8.1647 1.7032 19 6 -2.3638 -8.0774 3.7147 20 7 -2.8174 -9.3118 3.7061 21 14 -2.5416 -7.0277 5.2497 22 1 -3.8297 -6.2905 5.1986 23 1 -2.5177 -7.8999 6.4513 24 1 -1.4189 -6.0583 5.3191 25 1 -0.3634 0.6327 -0.8098 26 1 -0.3634 0.3848 0.9529 27 1 -0.3633 -1.0177 -0.1431 28 1 1.8934 -0.5138 0.8899 29 1 1.7541 1.9289 0.9327 30 1 3.1260 1.4440 -0.0926 31 1 1.6030 1.9825 -0.8400 32 1 0.3414 -0.0708 -2.4075 33 1 1.7927 0.9424 -2.5989 34 1 1.4158 -0.4220 -4.6256 35 1 2.9170 -0.9196 -3.8092 36 1 0.2042 -2.2863 -3.5059 37 1 1.5560 -2.8864 -4.4972 38 1 1.4442 -3.9618 -2.2205 39 1 2.9750 -3.0958 -2.5099 40 1 -0.2258 -4.1615 -0.8883 41 1 1.3527 -4.7448 -0.3082 42 1 0.6656 -4.2779 2.0286 43 1 -0.9126 -3.6946 1.4478 44 1 -1.3725 -5.9234 0.4620 45 1 0.2059 -6.5059 1.0430 46 1 -0.4826 -6.0385 3.3793 47 1 -2.0608 -5.4560 2.7975 48 1 -3.2439 -9.6774 4.4968 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588928925.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:14 Heat of formation + Delta-G solvation = -47.117194 kcal Electronic energy + Delta-G solvation = -23141.008353 eV Core-core repulsion = 20002.556994 eV Total energy + Delta-G solvation = -3138.451359 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.05102 -37.71128 -35.75528 -34.74488 -33.05395 -32.47031 -30.21595 -29.86811 -27.18280 -26.44306 -24.92929 -24.02008 -22.14743 -21.09935 -20.24035 -19.87669 -18.71240 -16.74748 -16.48129 -16.14939 -15.90430 -15.27750 -14.82396 -14.68410 -14.21374 -14.08345 -13.96143 -13.70977 -13.17498 -12.88741 -12.83449 -12.61107 -12.25047 -12.06913 -11.97566 -11.92440 -11.72343 -11.41903 -11.18937 -11.14920 -10.96868 -10.78168 -10.73703 -10.66387 -10.49894 -10.44022 -9.83835 -9.63433 -9.51407 -9.10680 -8.82176 -8.62041 -8.48086 -5.99364 -3.96697 2.67641 2.88799 3.36337 3.43281 3.49451 4.33607 4.46809 4.51296 4.53258 4.68089 4.81620 4.92327 4.99073 5.07130 5.13422 5.21355 5.29635 5.31819 5.35885 5.36982 5.45703 5.54048 5.59366 5.61073 5.71972 5.72117 5.78048 5.84416 5.89350 5.92586 6.04435 6.06107 6.15093 6.19960 6.30513 6.44411 6.47933 6.70999 6.71378 6.84567 7.01247 7.37114 7.40407 7.52947 7.86332 8.27516 8.59789 9.05757 9.64152 11.14218 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026161 B = 0.003372 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.058693 B = 8302.625001 C = 9108.233288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.103 4.103 3 C -0.151 4.151 4 C 0.153 3.847 5 H 0.066 0.934 6 C -0.135 4.135 7 C -0.120 4.120 8 C -0.136 4.136 9 C 0.106 3.894 10 N -0.614 5.614 11 C 0.512 3.488 12 O -0.520 6.520 13 C -0.141 4.141 14 C -0.105 4.105 15 C -0.102 4.102 16 C -0.015 4.015 17 C -0.519 4.519 18 H 0.071 0.929 19 C 0.064 3.936 20 N -0.907 5.907 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.264 1.264 25 H 0.034 0.966 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.117 0.883 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.015 0.985 47 H 0.011 0.989 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.840 20.102 -16.250 28.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.121 4.121 3 C -0.209 4.209 4 C 0.050 3.950 5 H 0.084 0.916 6 C -0.173 4.173 7 C -0.158 4.158 8 C -0.175 4.175 9 C -0.017 4.017 10 N -0.349 5.349 11 C 0.302 3.698 12 O -0.397 6.397 13 C -0.181 4.181 14 C -0.143 4.143 15 C -0.140 4.140 16 C -0.052 4.052 17 C -0.557 4.557 18 H 0.089 0.911 19 C -0.136 4.136 20 N -0.546 5.546 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.189 1.189 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.134 0.866 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.034 0.966 47 H 0.029 0.971 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.687 20.324 -15.598 28.159 hybrid contribution -0.159 0.397 0.597 0.735 sum 11.528 20.721 -15.000 28.058 Atomic orbital electron populations 1.21967 0.94871 1.01574 1.00192 1.21825 0.96939 0.94507 0.98861 1.21982 1.00385 0.97002 1.01531 1.21296 0.97946 0.80044 0.95713 0.91601 1.22087 1.02013 0.99112 0.94131 1.21522 1.00840 0.95428 0.97964 1.21926 1.01261 0.96509 0.97760 1.21754 1.00596 0.94424 0.84918 1.48171 1.61114 1.10258 1.15359 1.20898 0.76913 0.89617 0.82332 1.90673 1.55989 1.59839 1.33204 1.21848 1.01708 0.92764 1.01751 1.21473 1.00401 0.98377 0.94006 1.21472 0.99486 0.93076 0.99968 1.19571 0.95565 0.97055 0.93041 1.21193 1.37413 0.96732 1.00366 0.91128 1.25044 0.94991 0.94855 0.98726 1.69921 1.40325 1.14688 1.29659 0.86773 0.79112 0.80619 0.82798 1.20320 1.21464 1.18895 0.94676 0.93219 0.92009 0.86572 0.92627 0.93192 0.93212 0.90942 0.90958 0.91815 0.91968 0.91328 0.90723 0.89168 0.91453 0.89279 0.89282 0.91832 0.91869 0.92966 0.92915 0.96643 0.97100 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 7.21 37.16 0.27 -1.32 16 2 C -0.10 -1.16 2.17 -90.62 -0.20 -1.35 16 3 C -0.15 -1.37 8.82 37.16 0.33 -1.05 16 4 C 0.15 1.48 2.66 -67.60 -0.18 1.30 16 5 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 6 C -0.14 -1.07 4.67 -26.61 -0.12 -1.20 16 7 C -0.12 -0.78 5.88 -26.69 -0.16 -0.94 16 8 C -0.14 -0.90 6.08 -26.61 -0.16 -1.07 16 9 C 0.11 0.82 6.35 -3.71 -0.02 0.79 16 10 N -0.61 -6.36 2.92 -165.22 -0.48 -6.85 16 11 C 0.51 6.73 6.11 -10.98 -0.07 6.66 16 12 O -0.52 -8.25 9.94 5.56 0.06 -8.19 16 13 C -0.14 -1.80 4.06 -27.88 -0.11 -1.92 16 14 C -0.10 -1.75 4.50 -26.73 -0.12 -1.87 16 15 C -0.10 -2.02 5.15 -26.73 -0.14 -2.16 16 16 C -0.01 -0.37 4.04 -27.88 -0.11 -0.48 16 17 C -0.52 -15.18 9.66 -34.44 -0.33 -15.51 16 18 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 19 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.91 -28.54 13.96 55.43 0.77 -27.77 16 21 Si 0.88 22.47 27.47 -169.99 -4.67 17.80 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16 25 H 0.03 0.38 6.70 -51.93 -0.35 0.03 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.87 5.13 -51.93 -0.27 0.60 16 28 H 0.12 1.64 5.72 -53.03 -0.30 1.33 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.40 6.96 -51.93 -0.36 0.04 16 32 H 0.07 0.66 6.23 -51.93 -0.32 0.33 16 33 H 0.07 0.51 6.99 -51.93 -0.36 0.15 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.65 5.93 -51.93 -0.31 0.34 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.09 1.02 7.92 -51.93 -0.41 0.61 16 41 H 0.09 1.01 7.71 -51.93 -0.40 0.61 16 42 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16 43 H 0.06 1.11 8.10 -51.93 -0.42 0.69 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 47 H 0.01 0.26 7.57 -51.92 -0.39 -0.13 16 48 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 354.00 15.07 5.33 5.33 Total: -1.00 -32.25 354.00 -9.15 -41.39 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -8.93 Total: -3.46 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -1.23 Total: -18.27 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.29 Total: -34.61 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.06 Total: -8.19 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.67 Total: 17.80 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.25 -9.15 -41.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588928925.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.726 kcal (2) G-P(sol) polarization free energy of solvation -32.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds