Wall clock time and date at job start Tue Mar 31 2020 05:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47036 * 2 1 4 4 C 1.52997 * 109.47352 * 119.99931 * 2 1 3 5 5 C 1.53006 * 109.46977 * 65.00113 * 4 2 1 6 6 N 1.46497 * 109.46992 * 179.97438 * 5 4 2 7 7 C 1.46490 * 120.00322 * 269.99874 * 6 5 4 8 8 C 1.50700 * 109.47314 * 270.00006 * 7 6 5 9 9 H 1.07993 * 120.00043 * 0.02562 * 8 7 6 10 10 C 1.37873 * 119.99981 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00347 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 120.00205 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47277 * 89.99912 * 12 10 8 14 14 H 1.48500 * 109.47245 * 210.00409 * 12 10 8 15 15 H 1.48507 * 109.46654 * 330.00315 * 12 10 8 16 16 C 1.34780 * 119.99566 * 90.00440 * 6 5 4 17 17 O 1.21280 * 120.00423 * 359.97438 * 16 6 5 18 18 C 1.50701 * 119.99795 * 180.02562 * 16 6 5 19 19 C 1.52997 * 109.47212 * 179.97438 * 18 16 6 20 20 C 1.52992 * 109.47482 * 179.97438 * 19 18 16 21 21 C 1.52997 * 109.47482 * 179.97438 * 20 19 18 22 22 C 1.53002 * 117.50015 * 243.74696 * 21 20 19 23 23 C 1.53008 * 117.50075 * 175.09104 * 21 20 19 24 24 H 1.08992 * 109.47114 * 299.99956 * 1 2 3 25 25 H 1.08996 * 109.46775 * 60.00314 * 1 2 3 26 26 H 1.09000 * 109.46876 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47109 * 240.00430 * 2 1 3 28 28 H 1.08992 * 109.47387 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47166 * 300.00136 * 3 2 1 30 30 H 1.08992 * 109.47133 * 60.00055 * 3 2 1 31 31 H 1.09000 * 109.47241 * 305.00455 * 4 2 1 32 32 H 1.09002 * 109.47129 * 184.99987 * 4 2 1 33 33 H 1.09000 * 109.46856 * 60.00106 * 5 4 2 34 34 H 1.09000 * 109.46976 * 300.00431 * 5 4 2 35 35 H 1.09006 * 109.47028 * 30.00444 * 7 6 5 36 36 H 1.09002 * 109.47109 * 150.00022 * 7 6 5 37 37 H 0.96998 * 120.00161 * 179.97438 * 11 10 8 38 38 H 1.09002 * 109.47060 * 299.99722 * 18 16 6 39 39 H 1.09001 * 109.47380 * 59.99809 * 18 16 6 40 40 H 1.09002 * 109.47153 * 299.99998 * 19 18 16 41 41 H 1.08998 * 109.47533 * 59.99628 * 19 18 16 42 42 H 1.09002 * 109.47103 * 300.00247 * 20 19 18 43 43 H 1.09001 * 109.47066 * 60.00169 * 20 19 18 44 44 H 1.08997 * 115.55067 * 29.41999 * 21 20 19 45 45 H 1.09000 * 117.49856 * 359.97438 * 22 21 20 46 46 H 1.08999 * 117.49661 * 145.01806 * 22 21 20 47 47 H 1.08999 * 117.49506 * 214.98514 * 23 21 20 48 48 H 1.09002 * 117.49810 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6354 -2.1955 1.1879 6 7 2.1243 -2.8862 2.3837 7 6 3.4525 -3.5041 2.3812 8 6 3.3417 -4.9313 1.9099 9 1 2.3783 -5.3372 1.6390 10 6 4.4704 -5.7184 1.8237 11 7 5.6437 -5.2239 2.1531 12 14 4.3332 -7.4872 1.2389 13 1 4.4900 -7.5342 -0.2370 14 1 5.3978 -8.3032 1.8760 15 1 3.0025 -8.0303 1.6128 16 6 1.3519 -2.9532 3.4863 17 8 0.2525 -2.4413 3.4886 18 6 1.8551 -3.6632 4.7167 19 6 0.7931 -3.5934 5.8159 20 6 1.3036 -4.3147 7.0648 21 6 0.2419 -4.2443 8.1642 22 6 0.5973 -3.4810 9.4417 23 6 0.5156 -5.0094 9.4607 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6055 -0.2618 2.1369 32 1 3.1265 -0.6443 1.2951 33 1 2.0700 -2.6549 0.3002 34 1 0.5491 -2.2724 1.1419 35 1 4.1097 -2.9501 1.7109 36 1 3.8637 -3.4857 3.3905 37 1 6.4377 -5.7778 2.0928 38 1 2.0610 -4.7061 4.4757 39 1 2.7698 -3.1833 5.0647 40 1 0.5876 -2.5504 6.0568 41 1 -0.1218 -4.0730 5.4682 42 1 1.5088 -5.3577 6.8236 43 1 2.2186 -3.8354 7.4127 44 1 -0.7904 -4.1935 7.8183 45 1 1.5877 -3.0293 9.4990 46 1 -0.2013 -2.9282 9.9363 47 1 -0.3368 -5.4615 9.9677 48 1 1.4519 -5.5632 9.5302 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589706725.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:35 Heat of formation + Delta-G solvation = -58.067289 kcal Electronic energy + Delta-G solvation = -22498.288805 eV Core-core repulsion = 19359.362614 eV Total energy + Delta-G solvation = -3138.926191 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.18801 -37.63322 -36.52794 -34.67652 -33.37314 -32.51622 -29.52400 -27.53305 -27.00367 -26.72797 -23.38425 -22.98520 -22.38496 -21.27394 -20.31081 -19.72253 -18.07064 -16.64062 -16.18592 -15.53496 -15.44645 -15.08315 -14.79633 -14.40042 -14.26807 -13.89126 -13.50269 -13.21578 -12.89901 -12.42541 -12.28997 -12.08897 -11.97466 -11.78507 -11.61910 -11.51935 -11.40777 -11.34781 -10.99501 -10.95480 -10.85354 -10.67939 -10.61341 -10.45835 -10.38661 -10.23471 -10.11423 -9.97031 -9.75510 -9.69981 -8.92947 -8.54858 -7.64317 -6.18180 -4.25586 3.22246 3.29608 3.32764 3.51975 3.81667 4.00316 4.33792 4.71315 4.95412 4.96758 5.08392 5.14535 5.16140 5.17315 5.32392 5.46370 5.52295 5.60763 5.65956 5.71533 5.74924 5.86428 5.87360 5.92932 6.00788 6.01544 6.05220 6.09827 6.12698 6.13667 6.17675 6.26685 6.32213 6.38286 6.41758 6.42779 6.64607 6.67404 6.71628 6.75966 6.85715 7.20841 7.60088 7.77440 8.07215 8.41552 8.81010 9.11023 9.42757 10.88330 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.008343 B = 0.005561 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3355.490571 B = 5034.102387 C = 7802.422288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.127 4.127 5 C 0.119 3.881 6 N -0.597 5.597 7 C 0.238 3.762 8 C -0.537 4.537 9 H 0.060 0.940 10 C 0.065 3.935 11 N -0.892 5.892 12 Si 0.895 3.105 13 H -0.279 1.279 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.515 3.485 17 O -0.579 6.579 18 C -0.135 4.135 19 C -0.096 4.096 20 C -0.091 4.091 21 C -0.146 4.146 22 C -0.184 4.184 23 C -0.186 4.186 24 H 0.053 0.947 25 H 0.047 0.953 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.034 0.966 36 H 0.038 0.962 37 H 0.265 0.735 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.103 0.897 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.502 6.086 5.107 10.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.165 4.165 5 C -0.004 4.004 6 N -0.327 5.327 7 C 0.117 3.883 8 C -0.575 4.575 9 H 0.078 0.922 10 C -0.138 4.138 11 N -0.530 5.530 12 Si 0.723 3.277 13 H -0.205 1.205 14 H -0.211 1.211 15 H -0.198 1.198 16 C 0.304 3.696 17 O -0.460 6.460 18 C -0.175 4.175 19 C -0.134 4.134 20 C -0.128 4.128 21 C -0.165 4.165 22 C -0.221 4.221 23 C -0.223 4.223 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.120 0.880 39 H 0.104 0.896 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.121 0.879 45 H 0.111 0.889 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.835 6.291 5.109 10.602 hybrid contribution 0.275 -1.088 -0.383 1.186 sum -6.561 5.203 4.726 9.615 Atomic orbital electron populations 1.21869 0.95388 1.02047 1.01073 1.21054 0.95816 0.95880 0.98567 1.21820 1.00891 0.96241 1.01233 1.21987 1.00953 0.96080 0.97517 1.21329 0.99740 0.90960 0.88417 1.48247 1.19329 1.53282 1.11826 1.19410 0.77688 0.92694 0.98460 1.21507 0.94084 0.96561 1.45373 0.92155 1.24936 0.95093 0.98692 0.95048 1.69923 0.98466 1.36880 1.47740 0.86538 0.77942 0.84299 0.78966 1.20536 1.21054 1.19760 1.20566 0.84479 0.79489 0.85039 1.90569 1.21562 1.49596 1.84316 1.21621 0.99497 1.03185 0.93213 1.21280 0.98168 1.00893 0.93099 1.21224 0.96662 1.01143 0.93788 1.22382 1.00533 1.04262 0.89286 1.23029 1.02739 0.94254 1.02031 1.22967 1.03072 0.94406 1.01842 0.92791 0.93356 0.92277 0.91230 0.92789 0.93101 0.92932 0.92058 0.91936 0.90844 0.90963 0.94798 0.94369 0.92550 0.88014 0.89605 0.91831 0.91690 0.91370 0.91876 0.87894 0.88864 0.89243 0.89209 0.88865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.95 37.16 0.33 -1.56 16 2 C -0.09 -1.27 2.92 -90.62 -0.26 -1.53 16 3 C -0.14 -1.70 9.19 37.16 0.34 -1.35 16 4 C -0.13 -2.06 5.01 -26.73 -0.13 -2.20 16 5 C 0.12 2.24 5.16 -4.04 -0.02 2.22 16 6 N -0.60 -12.66 2.46 -175.06 -0.43 -13.09 16 7 C 0.24 5.61 4.96 -5.20 -0.03 5.58 16 8 C -0.54 -13.87 9.28 -34.44 -0.32 -14.19 16 9 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 10 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 11 N -0.89 -24.40 13.29 55.43 0.74 -23.66 16 12 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 16 C 0.52 10.82 7.67 -10.98 -0.08 10.73 16 17 O -0.58 -13.05 15.56 5.56 0.09 -12.97 16 18 C -0.14 -2.47 4.25 -27.88 -0.12 -2.59 16 19 C -0.10 -1.52 4.46 -26.74 -0.12 -1.64 16 20 C -0.09 -1.21 5.50 -26.74 -0.15 -1.36 16 21 C -0.15 -1.75 5.73 -90.62 -0.52 -2.27 16 22 C -0.18 -1.95 10.18 -26.69 -0.27 -2.22 16 23 C -0.19 -1.95 10.25 -26.69 -0.27 -2.22 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.81 6.57 -51.93 -0.34 0.47 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.07 1.39 8.07 -51.93 -0.42 0.97 16 34 H 0.07 1.38 5.85 -51.93 -0.30 1.08 16 35 H 0.03 0.84 8.07 -51.93 -0.42 0.43 16 36 H 0.04 0.92 6.44 -51.93 -0.33 0.59 16 37 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 38 H 0.10 1.97 8.00 -51.93 -0.42 1.56 16 39 H 0.09 1.51 7.40 -51.93 -0.38 1.12 16 40 H 0.06 1.02 8.10 -51.93 -0.42 0.60 16 41 H 0.06 1.07 8.10 -51.93 -0.42 0.65 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 0.82 7.87 -51.93 -0.41 0.41 16 44 H 0.10 1.23 8.08 -51.93 -0.42 0.81 16 45 H 0.09 0.97 8.03 -51.93 -0.42 0.55 16 46 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 385.55 15.07 5.81 5.81 Total: -1.00 -27.91 385.55 -9.86 -37.77 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -9.32 Total: 3.69 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -1.72 Total: -12.99 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.31 Total: -36.76 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.09 Total: -12.97 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -27.91 -9.86 -37.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589706725.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.295 kcal (2) G-P(sol) polarization free energy of solvation -27.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds