Wall clock time and date at job start Tue Mar 31 2020 05:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46481 * 2 1 4 4 H 1.09001 * 110.01852 * 305.05828 * 3 2 1 5 5 C 1.54265 * 110.03498 * 66.45859 * 3 2 1 6 6 C 1.54889 * 104.19778 * 142.93859 * 5 3 2 7 7 C 1.54891 * 102.74891 * 322.05621 * 6 5 3 8 8 C 1.54097 * 109.96460 * 183.61200 * 3 2 1 9 9 H 1.09001 * 110.00337 * 121.35303 * 8 3 2 10 10 C 1.53001 * 110.15985 * 359.85706 * 8 3 2 11 11 N 1.46497 * 109.47275 * 176.43213 * 10 8 3 12 12 C 1.34769 * 120.00219 * 179.97438 * 11 10 8 13 13 O 1.21282 * 120.00301 * 0.02562 * 12 11 10 14 14 C 1.50705 * 120.00266 * 179.97438 * 12 11 10 15 15 C 1.52994 * 109.47284 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.46929 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.46968 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.46879 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00323 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99844 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99916 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00001 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47100 * 90.00227 * 22 20 18 24 24 H 1.48497 * 109.47060 * 209.99931 * 22 20 18 25 25 H 1.48499 * 109.47177 * 329.99985 * 22 20 18 26 26 H 1.09002 * 109.47185 * 299.99921 * 1 2 3 27 27 H 1.08995 * 109.47222 * 60.00267 * 1 2 3 28 28 H 1.08998 * 109.47058 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46778 * 239.99739 * 2 1 3 30 30 H 1.08997 * 109.46748 * 119.99949 * 2 1 3 31 31 H 1.08996 * 110.48733 * 24.25782 * 5 3 2 32 32 H 1.09003 * 110.59753 * 261.67100 * 5 3 2 33 33 H 1.08998 * 110.75807 * 203.74124 * 6 5 3 34 34 H 1.09003 * 110.75811 * 80.36840 * 6 5 3 35 35 H 1.09002 * 110.48740 * 156.62163 * 7 6 5 36 36 H 1.08998 * 110.48604 * 279.13048 * 7 6 5 37 37 H 1.09003 * 109.46851 * 296.43058 * 10 8 3 38 38 H 1.08996 * 109.47329 * 56.42815 * 10 8 3 39 39 H 0.97003 * 119.99331 * 359.97438 * 11 10 8 40 40 H 1.09006 * 109.46750 * 300.00704 * 14 12 11 41 41 H 1.09004 * 109.46692 * 59.99843 * 14 12 11 42 42 H 1.08993 * 109.47540 * 299.99955 * 15 14 12 43 43 H 1.09005 * 109.46882 * 60.00834 * 15 14 12 44 44 H 1.09003 * 109.47319 * 299.99964 * 16 15 14 45 45 H 1.08996 * 109.47311 * 59.99996 * 16 15 14 46 46 H 1.08999 * 109.47322 * 300.00121 * 17 16 15 47 47 H 1.09001 * 109.46879 * 59.99811 * 17 16 15 48 48 H 0.96999 * 119.99801 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6096 1.9904 -0.8383 5 6 1.6702 2.1337 1.3287 6 6 2.8911 3.0342 1.6410 7 6 4.0859 2.1608 1.1841 8 6 3.5781 1.4569 -0.0912 9 1 3.8940 2.0116 -0.9748 10 6 4.1163 0.0259 -0.1498 11 7 5.5707 0.0578 -0.3218 12 6 6.2656 -1.0943 -0.3994 13 8 5.6868 -2.1577 -0.3272 14 6 7.7618 -1.0615 -0.5770 15 6 8.2999 -2.4925 -0.6354 16 6 9.8190 -2.4591 -0.8150 17 6 10.3572 -3.8902 -0.8741 18 6 11.8533 -3.8572 -1.0517 19 1 12.3688 -2.9104 -1.1155 20 6 12.5641 -5.0360 -1.1315 21 7 11.9364 -6.1890 -1.0532 22 14 14.4187 -4.9953 -1.3509 23 1 15.0745 -4.9796 -0.0187 24 1 14.8547 -6.1991 -2.1031 25 1 14.8012 -3.7748 -2.1054 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5299 1.3944 2.1172 32 1 0.7710 2.7382 1.2093 33 1 2.9527 3.2450 2.7086 34 1 2.8464 3.9589 1.0656 35 1 4.9500 2.7851 0.9570 36 1 4.3372 1.4273 1.9503 37 1 3.8713 -0.4925 0.7772 38 1 3.6624 -0.4989 -0.9904 39 1 6.0336 0.9083 -0.3800 40 1 8.0063 -0.5435 -1.5044 41 1 8.2159 -0.5361 0.2632 42 1 8.0555 -3.0108 0.2917 43 1 7.8458 -3.0174 -1.4759 44 1 10.0640 -1.9407 -1.7420 45 1 10.2729 -1.9343 0.0256 46 1 10.1122 -4.4090 0.0527 47 1 9.9032 -4.4146 -1.7150 48 1 12.4364 -7.0183 -1.1098 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590771199.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:29 Heat of formation + Delta-G solvation = -93.961385 kcal Electronic energy + Delta-G solvation = -21662.677046 eV Core-core repulsion = 18522.194370 eV Total energy + Delta-G solvation = -3140.482676 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.13544 -38.97285 -35.01931 -34.53660 -33.46680 -32.59282 -30.63527 -29.34193 -27.92746 -25.96236 -24.44494 -23.22630 -22.15065 -21.05893 -20.22435 -19.93617 -19.03784 -16.75356 -16.60782 -16.16425 -15.79792 -15.55510 -15.11478 -14.81019 -14.50917 -14.41657 -13.74232 -13.66813 -13.47729 -12.83021 -12.61832 -12.58989 -12.32600 -12.04860 -11.65918 -11.64785 -11.55807 -11.40323 -11.19457 -11.05454 -10.98696 -10.95704 -10.69562 -10.60842 -10.50219 -10.47588 -10.37201 -9.74101 -9.57652 -9.18342 -9.05524 -8.94928 -8.28106 -5.92880 -3.95260 2.80451 3.20262 3.35568 3.41469 3.44780 4.12273 4.17720 4.24775 4.50936 4.71946 4.85367 4.87907 4.95951 4.98969 5.08947 5.11352 5.20376 5.26437 5.36108 5.37715 5.40323 5.42285 5.44628 5.51989 5.56778 5.64705 5.71943 5.73970 5.79127 5.83265 5.92007 5.99036 6.01661 6.10368 6.18519 6.35052 6.41793 6.59534 6.88373 7.06474 7.23727 7.51249 7.76994 7.93409 8.08919 8.34392 8.50706 9.12530 9.68137 11.18467 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.040497 B = 0.002209 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.251210 B =12671.510016 C =13170.417546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.082 4.082 4 H 0.074 0.926 5 C -0.119 4.119 6 C -0.126 4.126 7 C -0.122 4.122 8 C -0.101 4.101 9 H 0.078 0.922 10 C 0.123 3.877 11 N -0.739 5.739 12 C 0.510 3.490 13 O -0.537 6.537 14 C -0.139 4.139 15 C -0.103 4.103 16 C -0.110 4.110 17 C 0.019 3.981 18 C -0.519 4.519 19 H 0.054 0.946 20 C 0.054 3.946 21 N -0.895 5.895 22 Si 0.892 3.108 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.398 0.602 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.016 0.984 47 H 0.016 0.984 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.417 21.000 3.541 30.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.101 4.101 4 H 0.092 0.908 5 C -0.157 4.157 6 C -0.163 4.163 7 C -0.159 4.159 8 C -0.120 4.120 9 H 0.096 0.904 10 C 0.000 4.000 11 N -0.392 5.392 12 C 0.298 3.702 13 O -0.413 6.413 14 C -0.179 4.179 15 C -0.141 4.141 16 C -0.148 4.148 17 C -0.018 4.018 18 C -0.558 4.558 19 H 0.072 0.928 20 C -0.147 4.147 21 N -0.535 5.535 22 Si 0.720 3.280 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.231 0.769 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.034 0.966 47 H 0.034 0.966 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -22.818 20.012 3.583 30.561 hybrid contribution 1.238 0.393 -0.168 1.310 sum -21.580 20.405 3.415 29.895 Atomic orbital electron populations 1.21796 0.95925 1.01647 1.01617 1.21807 0.95862 0.96043 1.02728 1.21800 0.93639 0.96432 0.98264 0.90769 1.22457 0.97792 0.98473 0.96942 1.22487 0.94797 0.98115 1.00933 1.22473 0.97855 0.98699 0.96899 1.22095 0.95566 0.95356 0.99012 0.90404 1.21622 0.80102 0.96229 1.02071 1.46153 1.08027 1.08986 1.76075 1.21084 0.90495 0.83361 0.75295 1.90702 1.71694 1.30010 1.48886 1.21792 0.90471 1.01947 1.03684 1.21443 0.97114 0.92714 1.02839 1.21650 0.92027 1.01190 0.99916 1.19100 0.95260 0.90130 0.97282 1.21288 0.92780 0.92206 1.49509 0.92764 1.25052 0.98383 0.95664 0.95553 1.69977 1.35519 0.97200 1.50780 0.86606 0.85901 0.77440 0.78102 1.20724 1.21273 1.19935 0.92753 0.92920 0.92763 0.91319 0.91427 0.91389 0.91763 0.91579 0.91569 0.91605 0.91177 0.91403 0.91329 0.76853 0.89246 0.89246 0.91852 0.91842 0.93508 0.93509 0.96600 0.96589 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.75 37.16 0.36 -0.60 16 2 C -0.13 -0.90 4.11 -26.73 -0.11 -1.01 16 3 C -0.08 -0.52 2.95 -89.39 -0.26 -0.78 16 4 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 5 C -0.12 -0.69 5.46 -25.07 -0.14 -0.83 16 6 C -0.13 -0.71 6.91 -24.74 -0.17 -0.88 16 7 C -0.12 -0.77 6.01 -25.07 -0.15 -0.92 16 8 C -0.10 -0.68 2.99 -89.38 -0.27 -0.95 16 9 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 10 C 0.12 1.16 3.78 -4.04 -0.02 1.14 16 11 N -0.74 -7.52 5.38 -60.30 -0.32 -7.84 16 12 C 0.51 7.28 7.83 -10.99 -0.09 7.19 16 13 O -0.54 -10.05 15.98 5.56 0.09 -9.96 16 14 C -0.14 -1.89 5.70 -27.88 -0.16 -2.05 16 15 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 16 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 17 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 18 C -0.52 -15.15 9.11 -34.44 -0.31 -15.47 16 19 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 20 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.90 -27.81 13.29 55.43 0.74 -27.07 16 22 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 26 H 0.05 0.31 7.46 -51.93 -0.39 -0.07 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.54 6.43 -51.93 -0.33 0.21 16 30 H 0.07 0.53 6.96 -51.93 -0.36 0.17 16 31 H 0.07 0.42 7.78 -51.93 -0.40 0.02 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.52 7.78 -51.93 -0.40 0.11 16 37 H 0.07 0.73 6.97 -51.93 -0.36 0.36 16 38 H 0.07 0.72 6.43 -51.93 -0.33 0.39 16 39 H 0.40 2.93 8.31 -40.82 -0.34 2.59 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 43 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 374.56 15.07 5.64 5.64 Total: -1.00 -33.50 374.56 -9.91 -43.41 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -9.23 Total: -3.55 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -1.80 Total: -17.72 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.41 Total: -34.91 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.50 -9.91 -43.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590771199.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.549 kcal (2) G-P(sol) polarization free energy of solvation -33.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds