Wall clock time and date at job start Tue Mar 31 2020 05:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.46778 * 2 1 4 4 H 1.09002 * 110.43542 * 54.30053 * 3 2 1 5 5 C 1.54266 * 110.48805 * 291.75773 * 3 2 1 6 6 C 1.53869 * 106.60031 * 217.58544 * 5 3 2 7 7 C 1.54266 * 106.59800 * 359.97438 * 6 5 3 8 8 C 1.54894 * 110.48128 * 176.84205 * 3 2 1 9 9 H 1.08993 * 110.76071 * 38.44153 * 8 3 2 10 10 C 1.53004 * 110.75410 * 275.06318 * 8 3 2 11 11 N 1.46504 * 109.46713 * 175.00357 * 10 8 3 12 12 C 1.34772 * 119.99639 * 180.02562 * 11 10 8 13 13 O 1.21279 * 120.00481 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99990 * 179.97438 * 12 11 10 15 15 C 1.52998 * 109.47300 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47149 * 180.02562 * 15 14 12 17 17 C 1.52998 * 109.47149 * 180.02562 * 16 15 14 18 18 C 1.50704 * 109.47168 * 179.97438 * 17 16 15 19 19 H 1.07995 * 119.99862 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99752 * 180.02562 * 18 17 16 21 21 N 1.31507 * 120.00185 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99451 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47582 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47191 * 119.99993 * 22 20 18 25 25 H 1.48500 * 109.47035 * 239.99560 * 22 20 18 26 26 H 1.08998 * 109.46720 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46755 * 300.00008 * 1 2 3 28 28 H 1.08998 * 109.46841 * 59.99940 * 1 2 3 29 29 H 1.08992 * 109.46998 * 240.00507 * 2 1 3 30 30 H 1.08994 * 109.47206 * 119.99751 * 2 1 3 31 31 H 1.09001 * 110.03084 * 336.86727 * 5 3 2 32 32 H 1.08995 * 110.03255 * 98.29193 * 5 3 2 33 33 H 1.08999 * 110.04012 * 119.28327 * 6 5 3 34 34 H 1.09006 * 110.02998 * 240.67078 * 6 5 3 35 35 H 1.09005 * 110.48526 * 142.29451 * 7 6 5 36 36 H 1.09007 * 110.48724 * 264.79935 * 7 6 5 37 37 H 1.08993 * 109.47246 * 295.00000 * 10 8 3 38 38 H 1.08998 * 109.46968 * 55.00577 * 10 8 3 39 39 H 0.96994 * 120.00099 * 359.97438 * 11 10 8 40 40 H 1.08999 * 109.47446 * 300.00664 * 14 12 11 41 41 H 1.09008 * 109.46831 * 60.00467 * 14 12 11 42 42 H 1.09002 * 109.47106 * 300.00110 * 15 14 12 43 43 H 1.08998 * 109.47022 * 60.00387 * 15 14 12 44 44 H 1.09002 * 109.46865 * 299.99840 * 16 15 14 45 45 H 1.08998 * 109.47183 * 60.00069 * 16 15 14 46 46 H 1.08999 * 109.47273 * 300.00181 * 17 16 15 47 47 H 1.08998 * 109.47022 * 59.99970 * 17 16 15 48 48 H 0.96998 * 119.99613 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6049 2.0000 0.8295 5 6 1.7149 2.1302 -1.3421 6 6 2.9176 3.0292 -1.6781 7 6 3.9313 2.8571 -0.5281 8 6 3.5866 1.4707 0.0799 9 1 4.0190 0.6681 -0.5174 10 6 4.0561 1.3805 1.5334 11 7 5.5179 1.2892 1.5695 12 6 6.1584 1.1994 2.7519 13 8 5.5247 1.1937 3.7859 14 6 7.6619 1.1049 2.7891 15 6 8.1314 1.0135 4.2424 16 6 9.6580 0.9182 4.2801 17 6 10.1274 0.8262 5.7334 18 6 11.6311 0.7317 5.7706 19 1 12.1953 0.7363 4.8498 20 6 12.2862 0.6382 6.9802 21 7 11.5990 0.6321 8.1015 22 14 14.1500 0.5218 7.0262 23 1 14.6822 0.5495 5.6402 24 1 14.6990 1.6704 7.7908 25 1 14.5506 -0.7477 7.6844 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.5793 1.3810 -2.1222 32 1 0.8131 2.7343 -1.2433 33 1 3.3657 2.7165 -2.6212 34 1 2.5993 4.0697 -1.7431 35 1 4.9506 2.8607 -0.9144 36 1 3.8030 3.6446 0.2146 37 1 3.7342 2.2698 2.0750 38 1 3.6251 0.4948 2.0001 39 1 6.0246 1.2926 0.7424 40 1 7.9837 0.2156 2.2471 41 1 8.0933 1.9906 2.3226 42 1 7.8097 1.9026 4.7847 43 1 7.7001 0.1276 4.7085 44 1 9.9800 0.0293 3.7377 45 1 10.0890 1.8043 3.8141 46 1 9.8053 1.7148 6.2763 47 1 9.6964 -0.0601 6.1990 48 1 12.0600 0.5659 8.9524 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590771202.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:31 Heat of formation + Delta-G solvation = -99.832106 kcal Electronic energy + Delta-G solvation = -21463.844809 eV Core-core repulsion = 18323.107560 eV Total energy + Delta-G solvation = -3140.737249 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.95551 -38.92574 -35.08245 -34.60846 -33.45946 -32.59564 -30.64101 -29.34451 -27.96321 -26.00929 -24.57852 -22.86060 -22.16525 -20.70039 -20.36173 -19.93459 -19.67458 -16.90802 -16.37488 -16.09782 -15.76606 -15.47336 -15.21522 -14.59856 -14.54754 -14.41287 -13.74646 -13.66006 -13.45359 -13.20784 -12.66400 -12.59571 -12.31495 -12.04526 -11.67651 -11.60657 -11.58689 -11.52908 -11.21008 -10.99338 -10.97087 -10.84599 -10.82291 -10.76572 -10.49967 -10.46280 -10.37558 -9.74168 -9.58007 -9.18473 -9.09071 -8.93986 -8.28605 -5.93147 -3.95456 2.79812 3.18150 3.34536 3.41620 3.45709 4.11348 4.15962 4.25111 4.50812 4.72211 4.79988 4.82988 4.94702 4.97214 5.07622 5.12768 5.16183 5.22453 5.32660 5.37739 5.40137 5.42147 5.44410 5.52532 5.56920 5.63300 5.70295 5.71344 5.76024 5.83022 5.90265 5.92188 6.00770 6.08747 6.18346 6.34757 6.39929 6.59313 6.88231 7.06347 7.23635 7.50341 7.77170 7.93278 8.08750 8.33578 8.50588 9.12576 9.68044 11.18230 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.041775 B = 0.002120 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.098230 B =13205.016893 C =13597.919881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.084 4.084 4 H 0.078 0.922 5 C -0.118 4.118 6 C -0.125 4.125 7 C -0.120 4.120 8 C -0.101 4.101 9 H 0.083 0.917 10 C 0.127 3.873 11 N -0.738 5.738 12 C 0.510 3.490 13 O -0.537 6.537 14 C -0.139 4.139 15 C -0.103 4.103 16 C -0.110 4.110 17 C 0.019 3.981 18 C -0.519 4.519 19 H 0.055 0.945 20 C 0.054 3.946 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.285 1.285 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.399 0.601 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.016 0.984 47 H 0.016 0.984 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.456 2.243 -22.947 31.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.103 4.103 4 H 0.096 0.904 5 C -0.156 4.156 6 C -0.163 4.163 7 C -0.158 4.158 8 C -0.120 4.120 9 H 0.101 0.899 10 C 0.003 3.997 11 N -0.391 5.391 12 C 0.298 3.702 13 O -0.413 6.413 14 C -0.179 4.179 15 C -0.141 4.141 16 C -0.148 4.148 17 C -0.018 4.018 18 C -0.557 4.557 19 H 0.073 0.927 20 C -0.147 4.147 21 N -0.535 5.535 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.232 0.768 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.034 0.966 47 H 0.034 0.966 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -21.910 2.236 -21.996 31.127 hybrid contribution 1.242 -0.052 -0.322 1.285 sum -20.667 2.183 -22.318 30.496 Atomic orbital electron populations 1.21783 0.95811 1.01579 1.01830 1.21600 0.95966 0.95896 1.02189 1.21999 0.93916 0.96266 0.98121 0.90373 1.22197 0.98042 0.98513 0.96826 1.22123 0.95900 0.99810 0.98476 1.22507 0.98997 0.96594 0.97708 1.22502 0.96022 0.98227 0.95260 0.89858 1.21308 0.80451 1.02128 0.95763 1.46096 1.07360 1.76700 1.08955 1.21093 0.91045 0.75109 0.82980 1.90704 1.68851 1.48776 1.32941 1.21791 0.90416 1.03827 1.01850 1.21445 0.97437 1.02864 0.92372 1.21649 0.91964 1.00005 1.01168 1.19106 0.95571 0.97285 0.89854 1.21328 0.92302 1.49844 0.92250 0.92702 1.25053 0.98245 0.95544 0.95835 1.69986 1.35192 1.50915 0.97367 0.86554 0.85995 0.77554 0.77980 1.19791 1.21068 1.21076 0.92848 0.92707 0.92728 0.91935 0.91727 0.91706 0.91879 0.91907 0.91898 0.91582 0.91270 0.91637 0.91642 0.76771 0.89227 0.89224 0.91847 0.91840 0.93505 0.93499 0.96582 0.96586 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.77 37.16 0.36 -0.51 16 2 C -0.12 -0.73 5.32 -26.72 -0.14 -0.87 16 3 C -0.08 -0.52 2.31 -88.96 -0.21 -0.73 16 4 H 0.08 0.54 8.05 -51.93 -0.42 0.12 16 5 C -0.12 -0.65 5.59 -25.62 -0.14 -0.80 16 6 C -0.13 -0.70 6.80 -25.62 -0.17 -0.88 16 7 C -0.12 -0.76 6.22 -24.87 -0.15 -0.91 16 8 C -0.10 -0.67 2.35 -88.42 -0.21 -0.88 16 9 H 0.08 0.53 8.06 -51.93 -0.42 0.11 16 10 C 0.13 1.20 5.12 -4.04 -0.02 1.18 16 11 N -0.74 -7.46 5.48 -60.29 -0.33 -7.79 16 12 C 0.51 7.27 7.83 -10.99 -0.09 7.18 16 13 O -0.54 -10.07 15.98 5.56 0.09 -9.98 16 14 C -0.14 -1.89 5.70 -27.88 -0.16 -2.05 16 15 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 16 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 17 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 18 C -0.52 -15.13 9.11 -34.44 -0.31 -15.45 16 19 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 20 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.90 -27.79 13.29 55.43 0.74 -27.05 16 22 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.28 7.55 -51.93 -0.39 -0.11 16 29 H 0.06 0.37 8.00 -51.93 -0.42 -0.05 16 30 H 0.06 0.45 7.73 -51.93 -0.40 0.05 16 31 H 0.06 0.34 7.74 -51.93 -0.40 -0.06 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.49 7.95 -51.93 -0.41 0.08 16 37 H 0.07 0.70 8.00 -51.93 -0.42 0.28 16 38 H 0.07 0.69 7.73 -51.93 -0.40 0.29 16 39 H 0.40 2.90 8.47 -40.82 -0.35 2.55 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16 42 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 43 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 381.07 15.07 5.74 5.74 Total: -1.00 -33.57 381.07 -10.00 -43.57 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -9.48 Total: -4.26 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -1.74 Total: -17.30 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.41 Total: -34.84 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.57 -10.00 -43.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590771202.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.261 kcal (2) G-P(sol) polarization free energy of solvation -33.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds