Wall clock time and date at job start Tue Mar 31 2020 05:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.46778 * 2 1 4 4 H 1.09002 * 110.43542 * 54.30053 * 3 2 1 5 5 C 1.54266 * 110.48805 * 291.75773 * 3 2 1 6 6 C 1.53869 * 106.60031 * 217.58544 * 5 3 2 7 7 C 1.54266 * 106.59800 * 359.97438 * 6 5 3 8 8 C 1.54894 * 110.48128 * 176.84205 * 3 2 1 9 9 H 1.08993 * 110.76071 * 38.44153 * 8 3 2 10 10 C 1.53004 * 110.75410 * 275.06318 * 8 3 2 11 11 N 1.46504 * 109.46713 * 175.00357 * 10 8 3 12 12 C 1.34772 * 119.99639 * 180.02562 * 11 10 8 13 13 O 1.21279 * 120.00481 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99990 * 179.97438 * 12 11 10 15 15 C 1.52998 * 109.47300 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47149 * 180.02562 * 15 14 12 17 17 C 1.52998 * 109.47149 * 180.02562 * 16 15 14 18 18 C 1.50704 * 109.47168 * 179.97438 * 17 16 15 19 19 H 1.07995 * 119.99862 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99752 * 180.02562 * 18 17 16 21 21 N 1.31507 * 120.00185 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99451 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47582 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47191 * 119.99993 * 22 20 18 25 25 H 1.48500 * 109.47035 * 239.99560 * 22 20 18 26 26 H 1.08998 * 109.46720 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46755 * 300.00008 * 1 2 3 28 28 H 1.08998 * 109.46841 * 59.99940 * 1 2 3 29 29 H 1.08992 * 109.46998 * 240.00507 * 2 1 3 30 30 H 1.08994 * 109.47206 * 119.99751 * 2 1 3 31 31 H 1.09001 * 110.03084 * 336.86727 * 5 3 2 32 32 H 1.08995 * 110.03255 * 98.29193 * 5 3 2 33 33 H 1.08999 * 110.04012 * 119.28327 * 6 5 3 34 34 H 1.09006 * 110.02998 * 240.67078 * 6 5 3 35 35 H 1.09005 * 110.48526 * 142.29451 * 7 6 5 36 36 H 1.09007 * 110.48724 * 264.79935 * 7 6 5 37 37 H 1.08993 * 109.47246 * 295.00000 * 10 8 3 38 38 H 1.08998 * 109.46968 * 55.00577 * 10 8 3 39 39 H 0.96994 * 120.00099 * 359.97438 * 11 10 8 40 40 H 1.08999 * 109.47446 * 300.00664 * 14 12 11 41 41 H 1.09008 * 109.46831 * 60.00467 * 14 12 11 42 42 H 1.09002 * 109.47106 * 300.00110 * 15 14 12 43 43 H 1.08998 * 109.47022 * 60.00387 * 15 14 12 44 44 H 1.09002 * 109.46865 * 299.99840 * 16 15 14 45 45 H 1.08998 * 109.47183 * 60.00069 * 16 15 14 46 46 H 1.08999 * 109.47273 * 300.00181 * 17 16 15 47 47 H 1.08998 * 109.47022 * 59.99970 * 17 16 15 48 48 H 0.96998 * 119.99613 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6049 2.0000 0.8295 5 6 1.7149 2.1302 -1.3421 6 6 2.9176 3.0292 -1.6781 7 6 3.9313 2.8571 -0.5281 8 6 3.5866 1.4707 0.0799 9 1 4.0190 0.6681 -0.5174 10 6 4.0561 1.3805 1.5334 11 7 5.5179 1.2892 1.5695 12 6 6.1584 1.1994 2.7519 13 8 5.5247 1.1937 3.7859 14 6 7.6619 1.1049 2.7891 15 6 8.1314 1.0135 4.2424 16 6 9.6580 0.9182 4.2801 17 6 10.1274 0.8262 5.7334 18 6 11.6311 0.7317 5.7706 19 1 12.1953 0.7363 4.8498 20 6 12.2862 0.6382 6.9802 21 7 11.5990 0.6321 8.1015 22 14 14.1500 0.5218 7.0262 23 1 14.6822 0.5495 5.6402 24 1 14.6990 1.6704 7.7908 25 1 14.5506 -0.7477 7.6844 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.5793 1.3810 -2.1222 32 1 0.8131 2.7343 -1.2433 33 1 3.3657 2.7165 -2.6212 34 1 2.5993 4.0697 -1.7431 35 1 4.9506 2.8607 -0.9144 36 1 3.8030 3.6446 0.2146 37 1 3.7342 2.2698 2.0750 38 1 3.6251 0.4948 2.0001 39 1 6.0246 1.2926 0.7424 40 1 7.9837 0.2156 2.2471 41 1 8.0933 1.9906 2.3226 42 1 7.8097 1.9026 4.7847 43 1 7.7001 0.1276 4.7085 44 1 9.9800 0.0293 3.7377 45 1 10.0890 1.8043 3.8141 46 1 9.8053 1.7148 6.2763 47 1 9.6964 -0.0601 6.1990 48 1 12.0600 0.5659 8.9524 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590771202.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:31 Heat of formation + Delta-G solvation = -119.220257 kcal Electronic energy + Delta-G solvation = -21464.685543 eV Core-core repulsion = 18323.107560 eV Total energy + Delta-G solvation = -3141.577982 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.91013 -39.66696 -36.68160 -35.70900 -34.60159 -33.96126 -31.87607 -30.61991 -28.43639 -27.59805 -25.68638 -23.91318 -23.27550 -21.82778 -21.48389 -20.96971 -20.35030 -18.42425 -17.92192 -17.14690 -16.93128 -16.50510 -16.17541 -15.88329 -15.66263 -15.07271 -14.82535 -14.68767 -14.53905 -14.02804 -13.79650 -13.75378 -13.56292 -13.27921 -13.20427 -12.83416 -12.78155 -12.31331 -12.14524 -12.13071 -12.10031 -12.04080 -11.82320 -11.51948 -11.41399 -11.37201 -11.33872 -11.31008 -11.20696 -11.13364 -10.70738 -10.55713 -10.06473 -8.18626 -6.30776 1.40474 1.41583 1.55119 1.67847 2.24332 2.42275 3.13999 3.57295 3.63325 3.72708 3.90194 4.08112 4.15806 4.20897 4.27821 4.34029 4.43494 4.52140 4.56650 4.65799 4.67889 4.70084 4.73671 4.80538 4.85731 4.87728 4.90913 4.93966 5.03281 5.12365 5.18626 5.20247 5.25882 5.27438 5.34087 5.34392 5.37491 5.43418 5.47946 5.55193 5.58596 5.59380 5.78581 5.88487 6.25579 6.59583 6.87986 7.31171 7.38790 8.93869 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.041775 B = 0.002120 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.098230 B =13205.016893 C =13597.919881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.084 4.084 4 H 0.067 0.933 5 C -0.115 4.115 6 C -0.124 4.124 7 C -0.120 4.120 8 C -0.091 4.091 9 H 0.095 0.905 10 C 0.128 3.872 11 N -0.716 5.716 12 C 0.508 3.492 13 O -0.592 6.592 14 C -0.128 4.128 15 C -0.096 4.096 16 C -0.095 4.095 17 C 0.017 3.983 18 C -0.540 4.540 19 H 0.067 0.933 20 C -0.009 4.009 21 N -0.938 5.938 22 Si 0.971 3.029 23 H -0.257 1.257 24 H -0.279 1.279 25 H -0.279 1.279 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.417 0.583 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.061 0.939 45 H 0.061 0.939 46 H -0.016 1.016 47 H -0.016 1.016 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.389 2.250 -26.075 33.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.103 4.103 4 H 0.086 0.914 5 C -0.153 4.153 6 C -0.161 4.161 7 C -0.158 4.158 8 C -0.110 4.110 9 H 0.114 0.886 10 C 0.005 3.995 11 N -0.369 5.369 12 C 0.296 3.704 13 O -0.472 6.472 14 C -0.168 4.168 15 C -0.135 4.135 16 C -0.133 4.133 17 C -0.020 4.020 18 C -0.578 4.578 19 H 0.085 0.915 20 C -0.206 4.206 21 N -0.579 5.579 22 Si 0.795 3.205 23 H -0.180 1.180 24 H -0.205 1.205 25 H -0.205 1.205 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.254 0.746 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.003 0.997 47 H 0.002 0.998 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.845 2.246 -25.197 32.779 hybrid contribution 0.841 -0.050 0.675 1.079 sum -20.005 2.197 -24.523 31.723 Atomic orbital electron populations 1.21778 0.95500 1.01749 1.01926 1.21586 0.96269 0.95726 1.01945 1.21983 0.93540 0.96339 0.98410 0.91428 1.22177 0.98185 0.98623 0.96280 1.22119 0.95618 0.99941 0.98458 1.22506 0.99877 0.95697 0.97699 1.22434 0.96282 0.99058 0.93215 0.88649 1.21332 0.79793 1.00816 0.97601 1.45901 1.07806 1.74609 1.08561 1.21222 0.91353 0.74571 0.83204 1.90694 1.69859 1.51653 1.35044 1.21672 0.89967 1.06606 0.98510 1.21245 0.95574 1.00880 0.95762 1.21449 0.93577 1.01306 0.96961 1.19073 0.95161 0.94287 0.93457 1.21788 0.93358 1.49733 0.92923 0.91508 1.26121 1.04251 0.94891 0.95345 1.70141 1.37724 1.51813 0.98192 0.85312 0.78735 0.77666 0.78784 1.18034 1.20481 1.20488 0.92659 0.93271 0.91975 0.91177 0.92914 0.91000 0.91711 0.91024 0.91791 0.90562 0.92412 0.93138 0.92959 0.74592 0.86314 0.86320 0.94003 0.93986 0.92019 0.92015 0.99749 0.99751 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.77 71.98 0.70 -0.90 16 2 C -0.12 -1.33 5.32 30.60 0.16 -1.17 16 3 C -0.08 -0.95 2.31 -9.72 -0.02 -0.98 16 4 H 0.07 0.92 8.05 -2.39 -0.02 0.90 16 5 C -0.12 -1.05 5.59 31.32 0.18 -0.88 16 6 C -0.12 -1.11 6.80 31.32 0.21 -0.90 16 7 C -0.12 -1.27 6.22 31.80 0.20 -1.07 16 8 C -0.09 -1.06 2.35 -9.37 -0.02 -1.08 16 9 H 0.10 0.94 8.06 -2.39 -0.02 0.92 16 10 C 0.13 2.35 5.12 86.38 0.44 2.79 16 11 N -0.72 -13.29 5.48 -463.06 -2.54 -15.83 16 12 C 0.51 14.07 7.83 87.66 0.69 14.75 16 13 O -0.59 -22.86 15.98 -3.03 -0.05 -22.91 16 14 C -0.13 -3.20 5.70 29.85 0.17 -3.03 16 15 C -0.10 -3.56 4.50 30.59 0.14 -3.42 16 16 C -0.10 -3.95 5.15 30.59 0.16 -3.79 16 17 C 0.02 0.97 4.97 29.85 0.15 1.12 16 18 C -0.54 -31.63 9.11 25.60 0.23 -31.40 16 19 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 20 C -0.01 -0.54 5.46 84.66 0.46 -0.08 16 21 N -0.94 -59.61 13.29 21.45 0.28 -59.32 16 22 Si 0.97 45.16 29.54 68.60 2.03 47.19 16 23 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 26 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.05 0.56 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.56 7.55 -2.39 -0.02 0.54 16 29 H 0.07 0.69 8.00 -2.39 -0.02 0.67 16 30 H 0.05 0.72 7.73 -2.39 -0.02 0.70 16 31 H 0.07 0.58 7.74 -2.39 -0.02 0.56 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 33 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 36 H 0.06 0.76 7.95 -2.38 -0.02 0.74 16 37 H 0.05 1.10 8.00 -2.39 -0.02 1.08 16 38 H 0.05 1.12 7.73 -2.39 -0.02 1.10 16 39 H 0.42 4.74 8.47 -92.71 -0.79 3.96 16 40 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.12 2.34 8.14 -2.38 -0.02 2.32 16 42 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 43 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 44 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 46 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 47 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 48 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -75.25 381.07 3.67 -71.58 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 0.10 Total: 9.33 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: 3.85 Total: -30.04 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -2.25 Total: -75.15 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.05 Total: -22.91 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -75.25 3.67 -71.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590771202.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.645 kcal (2) G-P(sol) polarization free energy of solvation -75.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds