Wall clock time and date at job start Tue Mar 31 2020 05:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47193 * 2 1 4 4 H 1.09011 * 110.01798 * 306.39678 * 3 2 1 5 5 C 1.54261 * 110.07439 * 67.81153 * 3 2 1 6 6 C 1.54892 * 104.20007 * 142.91671 * 5 3 2 7 7 C 1.54885 * 102.74481 * 322.06081 * 6 5 3 8 8 C 1.53876 * 110.03392 * 185.00380 * 3 2 1 9 9 H 1.08993 * 110.03333 * 0.02562 * 8 3 2 10 10 C 1.53002 * 110.03170 * 121.38506 * 8 3 2 11 11 N 1.46496 * 109.47045 * 185.00266 * 10 8 3 12 12 C 1.34784 * 120.00155 * 180.02562 * 11 10 8 13 13 O 1.21279 * 119.99673 * 359.97438 * 12 11 10 14 14 C 1.50696 * 120.00109 * 179.97438 * 12 11 10 15 15 C 1.52997 * 109.47055 * 179.97438 * 14 12 11 16 16 C 1.53006 * 109.47127 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.47127 * 180.02562 * 16 15 14 18 18 C 1.50696 * 109.47055 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00290 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00258 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00465 * 180.02562 * 20 18 17 22 22 Si 1.86807 * 119.99610 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.46964 * 90.00693 * 22 20 18 24 24 H 1.48502 * 109.47035 * 210.00526 * 22 20 18 25 25 H 1.48499 * 109.47257 * 330.00601 * 22 20 18 26 26 H 1.08999 * 109.47669 * 59.99946 * 1 2 3 27 27 H 1.09008 * 109.47123 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46610 * 299.99575 * 1 2 3 29 29 H 1.09008 * 109.47077 * 240.00420 * 2 1 3 30 30 H 1.08999 * 109.47669 * 120.00054 * 2 1 3 31 31 H 1.09001 * 110.48750 * 261.59810 * 5 3 2 32 32 H 1.09003 * 110.48733 * 24.23876 * 5 3 2 33 33 H 1.09000 * 110.75312 * 80.37510 * 6 5 3 34 34 H 1.08991 * 110.75395 * 203.55918 * 6 5 3 35 35 H 1.09002 * 110.48837 * 279.26073 * 7 6 5 36 36 H 1.09000 * 110.48495 * 156.61626 * 7 6 5 37 37 H 1.09001 * 109.47600 * 64.99625 * 10 8 3 38 38 H 1.09004 * 109.47006 * 304.99846 * 10 8 3 39 39 H 0.97002 * 120.00100 * 359.97438 * 11 10 8 40 40 H 1.09001 * 109.47324 * 59.99162 * 14 12 11 41 41 H 1.09004 * 109.47043 * 299.99530 * 14 12 11 42 42 H 1.09001 * 109.46832 * 59.99966 * 15 14 12 43 43 H 1.08993 * 109.47194 * 299.99487 * 15 14 12 44 44 H 1.09001 * 109.46801 * 300.00272 * 16 15 14 45 45 H 1.09001 * 109.46998 * 59.99868 * 16 15 14 46 46 H 1.08996 * 109.46952 * 300.00302 * 17 16 15 47 47 H 1.09001 * 109.46832 * 60.00321 * 17 16 15 48 48 H 0.96999 * 120.00061 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5914 1.9969 -0.8244 5 6 1.7006 2.1241 1.3416 6 6 2.9289 3.0215 1.6333 7 6 4.1123 2.1507 1.1434 8 6 3.5735 1.4594 -0.1261 9 1 3.9543 0.4400 -0.1877 10 6 3.9884 2.2491 -1.3691 11 7 5.4400 2.1574 -1.5438 12 6 6.0348 2.7804 -2.5805 13 8 5.3681 3.4166 -3.3690 14 6 7.5281 2.6865 -2.7599 15 6 7.9430 3.4761 -4.0030 16 6 9.4593 3.3813 -4.1848 17 6 9.8743 4.1714 -5.4275 18 6 11.3676 4.0775 -5.6069 19 1 11.9614 3.5113 -4.9046 20 6 11.9761 4.7153 -6.6671 21 7 13.2793 4.6330 -6.8240 22 14 10.9492 5.6953 -7.8815 23 1 10.8432 7.1021 -7.4181 24 1 11.5967 5.6617 -9.2175 25 1 9.5915 5.1010 -7.9744 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 0.7998 2.7301 1.2445 32 1 1.5773 1.3790 2.1276 33 1 2.8719 3.9505 1.0659 34 1 3.0124 3.2269 2.7004 35 1 4.3786 1.4099 1.8973 36 1 4.9717 2.7761 0.9015 37 1 3.7023 3.2939 -1.2482 38 1 3.4901 1.8350 -2.2457 39 1 5.9733 1.6488 -0.9130 40 1 7.8145 1.6418 -2.8810 41 1 8.0261 3.1005 -1.8831 42 1 7.6565 4.5208 -3.8822 43 1 7.4451 3.0618 -4.8796 44 1 9.9569 3.7959 -3.3081 45 1 9.7462 2.3367 -4.3053 46 1 9.3766 3.7572 -6.3043 47 1 9.5875 5.2160 -5.3064 48 1 13.7072 5.0814 -7.5701 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590771203.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:33 Heat of formation + Delta-G solvation = -95.306083 kcal Electronic energy + Delta-G solvation = -21563.846205 eV Core-core repulsion = 18423.305219 eV Total energy + Delta-G solvation = -3140.540986 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.10110 -39.00812 -35.20341 -34.71721 -33.37198 -32.55660 -30.69165 -29.62486 -28.00281 -26.35269 -24.87201 -22.70438 -22.05355 -20.68113 -20.32459 -19.99058 -19.63629 -16.98257 -16.59946 -16.25042 -15.87120 -15.59233 -15.50222 -14.83139 -14.36939 -14.17462 -13.79847 -13.70253 -13.22470 -13.11905 -12.97690 -12.62157 -12.35119 -12.24283 -12.06253 -11.72332 -11.66707 -11.40823 -11.21427 -11.09646 -11.06478 -10.96388 -10.86178 -10.79999 -10.70739 -10.50939 -9.93064 -9.78336 -9.62135 -9.37996 -9.15057 -9.09538 -8.47446 -5.98687 -3.95996 2.72651 3.12585 3.36970 3.43825 3.50256 4.11305 4.17236 4.19990 4.51926 4.68832 4.74837 4.78481 4.89944 4.93958 5.07283 5.11282 5.17149 5.23448 5.27369 5.29834 5.33070 5.36640 5.39302 5.50354 5.52628 5.59451 5.63402 5.69572 5.75501 5.80806 5.84186 5.89211 5.94747 6.06032 6.06685 6.18934 6.33419 6.45603 6.71597 6.85697 7.02041 7.40791 7.44032 7.53646 7.86916 8.26513 8.60393 9.06346 9.64765 11.14770 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.039781 B = 0.002225 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.689098 B =12580.345740 C =12771.344691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.086 4.086 4 H 0.076 0.924 5 C -0.118 4.118 6 C -0.126 4.126 7 C -0.123 4.123 8 C -0.101 4.101 9 H 0.079 0.921 10 C 0.126 3.874 11 N -0.738 5.738 12 C 0.511 3.489 13 O -0.539 6.539 14 C -0.139 4.139 15 C -0.106 4.106 16 C -0.103 4.103 17 C -0.016 4.016 18 C -0.519 4.519 19 H 0.071 0.929 20 C 0.064 3.936 21 N -0.906 5.906 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.264 1.264 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.399 0.601 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.015 0.985 47 H 0.011 0.989 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.357 -9.356 19.805 33.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.105 4.105 4 H 0.094 0.906 5 C -0.156 4.156 6 C -0.164 4.164 7 C -0.161 4.161 8 C -0.120 4.120 9 H 0.097 0.903 10 C 0.003 3.997 11 N -0.391 5.391 12 C 0.298 3.702 13 O -0.415 6.415 14 C -0.179 4.179 15 C -0.144 4.144 16 C -0.140 4.140 17 C -0.053 4.053 18 C -0.557 4.557 19 H 0.089 0.911 20 C -0.137 4.137 21 N -0.545 5.545 22 Si 0.707 3.293 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.189 1.189 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.233 0.767 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.034 0.966 47 H 0.029 0.971 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -25.707 -8.833 19.096 33.220 hybrid contribution -0.136 0.267 -0.366 0.473 sum -25.843 -8.566 18.730 33.046 Atomic orbital electron populations 1.21793 0.95822 1.01547 1.01918 1.21643 0.95959 0.95848 1.01996 1.21805 0.93859 0.96422 0.98404 0.90561 1.22446 0.97976 0.98493 0.96653 1.22499 0.94654 0.98374 1.00863 1.22459 0.98264 0.98846 0.96492 1.22096 0.95830 0.99661 0.94406 0.90274 1.21404 0.80800 1.00459 0.97060 1.46125 1.08320 1.54781 1.29872 1.21075 0.91088 0.78018 0.79994 1.90698 1.66358 1.40971 1.43447 1.21772 0.90735 1.03384 1.02015 1.21477 0.97670 0.99871 0.95385 1.21478 0.92022 1.00613 0.99904 1.19579 0.97142 0.95079 0.93525 1.21188 0.90810 1.32161 1.11510 0.91115 1.25050 0.94800 0.96179 0.97649 1.69922 1.09019 1.44468 1.31139 0.86770 0.81123 0.80787 0.80596 1.20325 1.21470 1.18898 0.92715 0.92871 0.92639 0.91934 0.91920 0.91723 0.91498 0.91451 0.91601 0.91415 0.91191 0.91613 0.91757 0.76674 0.89050 0.89052 0.91845 0.91832 0.92887 0.92854 0.96620 0.97057 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.77 37.16 0.36 -0.44 16 2 C -0.12 -0.64 5.06 -26.73 -0.14 -0.78 16 3 C -0.09 -0.52 2.58 -89.50 -0.23 -0.75 16 4 H 0.08 0.52 7.67 -51.92 -0.40 0.12 16 5 C -0.12 -0.66 5.54 -25.07 -0.14 -0.79 16 6 C -0.13 -0.76 6.91 -24.74 -0.17 -0.93 16 7 C -0.12 -0.74 6.19 -25.07 -0.16 -0.89 16 8 C -0.10 -0.64 2.62 -89.50 -0.23 -0.88 16 9 H 0.08 0.47 7.67 -51.93 -0.40 0.07 16 10 C 0.13 1.15 4.74 -4.04 -0.02 1.13 16 11 N -0.74 -7.12 5.10 -60.29 -0.31 -7.43 16 12 C 0.51 6.94 7.83 -10.98 -0.09 6.86 16 13 O -0.54 -9.69 15.98 5.56 0.09 -9.60 16 14 C -0.14 -1.79 5.70 -27.89 -0.16 -1.95 16 15 C -0.11 -1.82 4.50 -26.73 -0.12 -1.94 16 16 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 17 C -0.02 -0.40 4.04 -27.89 -0.11 -0.51 16 18 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 19 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 20 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 21 N -0.91 -28.58 13.96 55.43 0.77 -27.80 16 22 Si 0.88 22.58 27.47 -169.99 -4.67 17.91 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.26 8.14 -51.92 -0.42 -0.17 16 28 H 0.05 0.27 7.51 -51.93 -0.39 -0.12 16 29 H 0.06 0.37 8.14 -51.92 -0.42 -0.06 16 30 H 0.06 0.33 8.01 -51.93 -0.42 -0.09 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.35 7.76 -51.93 -0.40 -0.05 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.47 7.42 -51.93 -0.39 0.08 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.40 2.75 8.29 -40.82 -0.34 2.41 16 40 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 43 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 47 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 48 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 376.46 15.07 5.67 5.67 Total: -1.00 -33.78 376.46 -9.63 -43.41 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -9.42 Total: -4.36 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -1.77 Total: -17.80 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.47 Total: -35.23 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.67 Total: 17.91 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.78 -9.63 -43.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590771203.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.894 kcal (2) G-P(sol) polarization free energy of solvation -33.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds