Wall clock time and date at job start Tue Mar 31 2020 05:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47187 * 2 1 4 4 C 1.53000 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47281 * 305.00527 * 4 3 2 6 6 N 1.46505 * 109.46635 * 64.99836 * 4 3 2 7 7 C 1.34777 * 120.00300 * 274.99678 * 6 4 3 8 8 O 1.21280 * 119.99889 * 0.02562 * 7 6 4 9 9 C 1.50698 * 119.99996 * 180.02562 * 7 6 4 10 10 C 1.52998 * 109.47009 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47228 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47228 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47366 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99808 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00606 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99353 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00450 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47023 * 90.00027 * 17 15 13 19 19 H 1.48501 * 109.47465 * 210.00055 * 17 15 13 20 20 H 1.48501 * 109.47307 * 329.99949 * 17 15 13 21 21 C 1.52994 * 109.47387 * 184.99610 * 4 3 2 22 22 C 1.53782 * 113.61734 * 180.02562 * 21 4 3 23 23 C 1.53781 * 87.08260 * 220.02231 * 22 21 4 24 24 C 1.53786 * 87.17350 * 25.39213 * 23 22 21 25 25 H 1.09002 * 109.46943 * 299.99882 * 1 2 3 26 26 H 1.08995 * 109.47108 * 59.99596 * 1 2 3 27 27 H 1.08997 * 109.47127 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46943 * 240.00118 * 2 1 3 29 29 H 1.09003 * 109.47325 * 120.00235 * 2 1 3 30 30 H 1.09002 * 109.47083 * 60.00203 * 3 2 1 31 31 H 1.09003 * 109.47179 * 300.00324 * 3 2 1 32 32 H 0.97004 * 119.99592 * 95.00647 * 6 4 3 33 33 H 1.09005 * 109.47380 * 300.00069 * 9 7 6 34 34 H 1.08992 * 109.47341 * 60.00264 * 9 7 6 35 35 H 1.09007 * 109.47458 * 300.00228 * 10 9 7 36 36 H 1.09004 * 109.47241 * 59.99587 * 10 9 7 37 37 H 1.08995 * 109.47384 * 300.00128 * 11 10 9 38 38 H 1.08999 * 109.47454 * 60.00133 * 11 10 9 39 39 H 1.09006 * 109.47544 * 299.99848 * 12 11 10 40 40 H 1.08997 * 109.47458 * 60.00067 * 12 11 10 41 41 H 0.97006 * 119.99939 * 180.02562 * 16 15 13 42 42 H 1.09002 * 112.84929 * 311.20124 * 21 4 3 43 43 H 1.09001 * 113.61250 * 105.47049 * 22 21 4 44 44 H 1.08997 * 113.61225 * 334.56890 * 22 21 4 45 45 H 1.09002 * 113.61445 * 139.98212 * 23 22 21 46 46 H 1.09002 * 113.61408 * 270.79943 * 23 22 21 47 47 H 1.08993 * 113.61491 * 89.15923 * 24 23 22 48 48 H 1.09000 * 113.61138 * 220.06261 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8531 0.8426 6 7 4.0588 0.8585 -1.2509 7 6 4.1876 -0.4782 -1.3658 8 8 3.8984 -1.1976 -0.4333 9 6 4.6909 -1.0788 -2.6531 10 6 4.7416 -2.6021 -2.5195 11 6 5.2520 -3.2119 -3.8266 12 6 5.3033 -4.7352 -3.6928 13 6 5.8066 -5.3359 -4.9800 14 1 6.0645 -4.6952 -5.8103 15 6 5.9379 -6.7033 -5.0978 16 7 5.6234 -7.4835 -4.0869 17 14 6.5624 -7.4478 -6.6931 18 1 8.0423 -7.5598 -6.6411 19 1 5.9700 -8.7973 -6.8750 20 1 6.1715 -6.5781 -7.8316 21 6 4.0800 2.8794 0.1263 22 6 5.6138 2.9902 0.1359 23 6 5.4507 4.0671 1.2215 24 6 4.1111 3.3996 1.5750 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 4.2898 1.4339 -1.9969 33 1 4.0189 -0.8080 -3.4676 34 1 5.6902 -0.6988 -2.8650 35 1 5.4133 -2.8733 -1.7049 36 1 3.7420 -2.9818 -2.3078 37 1 4.5800 -2.9408 -4.6408 38 1 6.2515 -2.8324 -4.0388 39 1 5.9756 -5.0060 -2.8787 40 1 4.3041 -5.1152 -3.4805 41 1 5.7160 -8.4456 -4.1695 42 1 3.5976 3.5624 -0.5730 43 1 6.0300 3.3702 -0.7971 44 1 6.1144 2.0881 0.4876 45 1 6.1940 4.0022 2.0162 46 1 5.3441 5.0761 0.8231 47 1 4.2002 2.6098 2.3207 48 1 3.3160 4.1098 1.8020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590922307.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:10 Heat of formation + Delta-G solvation = -67.221780 kcal Electronic energy + Delta-G solvation = -22148.206251 eV Core-core repulsion = 19008.883092 eV Total energy + Delta-G solvation = -3139.323159 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.36861 -38.79294 -35.73921 -34.73825 -33.55341 -32.55374 -30.26058 -29.03398 -26.21680 -25.68417 -25.47266 -22.81547 -21.88520 -20.89154 -20.30443 -19.93144 -19.54133 -16.80665 -16.62803 -16.12817 -15.74628 -15.66083 -14.97547 -14.66684 -14.42088 -14.16240 -13.56944 -13.47278 -13.05291 -12.77321 -12.62241 -12.44348 -12.33326 -12.08877 -11.75980 -11.64338 -11.55793 -11.50246 -11.23317 -10.95784 -10.83412 -10.67847 -10.60042 -10.49359 -10.46262 -10.37209 -10.33601 -9.66303 -9.57723 -9.17842 -8.97354 -8.94185 -8.28346 -5.93180 -3.95558 2.82667 3.17513 3.35342 3.41286 3.44572 4.21126 4.29778 4.36475 4.50727 4.53914 4.79970 4.91298 4.96373 5.04098 5.17873 5.27695 5.37374 5.40219 5.41593 5.43457 5.43731 5.44199 5.55413 5.58009 5.63189 5.64928 5.81669 5.83601 5.90148 5.96120 6.09099 6.16152 6.18631 6.24031 6.35393 6.44251 6.51817 6.60367 6.88301 7.06426 7.23627 7.55763 7.76691 7.93164 8.08643 8.38352 8.50513 9.12260 9.67939 11.18195 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024226 B = 0.002735 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.501718 B =10236.996152 C =11012.420282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.127 4.127 4 C 0.154 3.846 5 H 0.087 0.913 6 N -0.731 5.731 7 C 0.512 3.488 8 O -0.531 6.531 9 C -0.140 4.140 10 C -0.102 4.102 11 C -0.110 4.110 12 C 0.020 3.980 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.120 4.120 22 C -0.134 4.134 23 C -0.144 4.144 24 C -0.130 4.130 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.397 0.603 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.015 0.985 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.093 0.907 43 H 0.067 0.933 44 H 0.082 0.918 45 H 0.067 0.933 46 H 0.079 0.921 47 H 0.083 0.917 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.106 25.869 9.567 28.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.165 4.165 4 C 0.049 3.951 5 H 0.105 0.895 6 N -0.383 5.383 7 C 0.299 3.701 8 O -0.406 6.406 9 C -0.180 4.180 10 C -0.140 4.140 11 C -0.148 4.148 12 C -0.017 4.017 13 C -0.558 4.558 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.139 4.139 22 C -0.171 4.171 23 C -0.181 4.181 24 C -0.168 4.168 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.231 0.769 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.111 0.889 43 H 0.085 0.915 44 H 0.101 0.899 45 H 0.086 0.914 46 H 0.097 0.903 47 H 0.102 0.898 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.330 25.140 10.304 27.688 hybrid contribution 0.415 -0.159 -1.269 1.345 sum -4.915 24.982 9.034 27.016 Atomic orbital electron populations 1.21800 0.96646 1.01526 1.00963 1.21592 0.94683 0.95964 1.03521 1.22021 0.94886 0.97836 1.01802 1.21007 0.93527 0.92620 0.87920 0.89543 1.46105 1.68556 1.07274 1.16395 1.20993 0.76947 0.81704 0.90443 1.90708 1.48883 1.60261 1.40788 1.21795 1.02377 0.99150 0.94669 1.21432 1.02371 0.90535 0.99654 1.21646 0.99122 0.99542 0.94484 1.19092 0.97190 0.88562 0.96864 1.21291 1.43452 0.91648 0.99412 0.92783 1.25043 0.95709 0.97439 0.96407 1.69979 1.48775 1.04062 1.30684 0.86614 0.78956 0.78530 0.83999 1.20714 1.21261 1.19932 1.22889 0.96760 0.95864 0.98401 1.22881 0.95520 0.99398 0.99301 1.22819 0.97767 0.98394 0.99139 1.22918 0.97794 1.00237 0.95882 0.93283 0.93273 0.92798 0.91439 0.91553 0.91498 0.92148 0.76940 0.89384 0.89349 0.91870 0.91879 0.93548 0.93554 0.96626 0.96608 0.93062 0.88904 0.91459 0.89889 0.91438 0.90277 0.89828 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 37.16 0.37 -1.19 16 2 C -0.12 -1.42 4.54 -26.73 -0.12 -1.54 16 3 C -0.13 -1.16 4.89 -26.73 -0.13 -1.29 16 4 C 0.15 1.40 2.03 -67.93 -0.14 1.27 16 5 H 0.09 0.99 7.39 -51.93 -0.38 0.61 16 6 N -0.73 -7.07 4.78 -53.81 -0.26 -7.33 16 7 C 0.51 6.87 6.40 -10.99 -0.07 6.80 16 8 O -0.53 -9.13 13.12 5.56 0.07 -9.05 16 9 C -0.14 -1.86 5.70 -27.89 -0.16 -2.02 16 10 C -0.10 -1.84 4.50 -26.73 -0.12 -1.96 16 11 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 12 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 13 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 14 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.78 13.29 55.43 0.74 -27.04 16 17 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 C -0.12 -0.81 3.19 -89.71 -0.29 -1.10 16 22 C -0.13 -0.92 7.40 -25.92 -0.19 -1.12 16 23 C -0.14 -0.88 8.08 -25.92 -0.21 -1.09 16 24 C -0.13 -0.83 7.65 -25.82 -0.20 -1.03 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.95 5.65 -51.93 -0.29 0.65 16 29 H 0.07 0.89 7.85 -51.93 -0.41 0.49 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.40 2.86 8.60 -40.82 -0.35 2.51 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 36 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.08 0.58 7.97 -51.93 -0.41 0.16 16 48 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 379.08 15.07 5.71 5.71 Total: -1.00 -32.64 379.08 -10.12 -42.75 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -9.42 Total: -1.86 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -1.94 Total: -20.24 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.48 Total: -34.37 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.07 Total: -9.05 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.64 -10.12 -42.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590922307.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.467 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds