Wall clock time and date at job start Tue Mar 31 2020 05:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47107 * 2 1 4 4 H 1.09001 * 109.47149 * 54.99867 * 3 2 1 5 5 C 1.53001 * 109.47374 * 295.00713 * 3 2 1 6 6 C 1.52997 * 109.47556 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.46707 * 59.99618 * 6 5 3 8 8 C 1.53000 * 109.47357 * 299.99909 * 7 6 5 9 9 H 1.08999 * 109.47235 * 300.00589 * 8 7 6 10 10 C 1.52994 * 109.47086 * 180.02562 * 8 7 6 11 11 N 1.46903 * 109.47047 * 173.76182 * 10 8 7 12 12 C 1.47839 * 111.00107 * 285.30755 * 11 10 8 13 13 C 1.54899 * 104.79923 * 213.63406 * 12 11 10 14 14 C 1.55141 * 101.65433 * 37.07119 * 13 12 11 15 15 O 1.42900 * 110.70594 * 82.72684 * 14 13 12 16 16 C 1.50695 * 110.70855 * 205.96427 * 14 13 12 17 17 H 1.08000 * 120.00439 * 18.54655 * 16 14 13 18 18 C 1.37877 * 119.99952 * 198.54472 * 16 14 13 19 19 N 1.31516 * 120.00044 * 175.14452 * 18 16 14 20 20 Si 1.86799 * 120.00065 * 355.14348 * 18 16 14 21 21 H 1.48497 * 109.47208 * 84.97704 * 20 18 16 22 22 H 1.48506 * 109.47191 * 204.97914 * 20 18 16 23 23 H 1.48500 * 109.47086 * 324.97587 * 20 18 16 24 24 C 1.47448 * 111.00243 * 164.46542 * 11 10 8 25 25 C 1.52994 * 109.47332 * 175.00392 * 3 2 1 26 26 H 1.08997 * 109.46854 * 299.99666 * 1 2 3 27 27 H 1.09000 * 109.47245 * 59.99664 * 1 2 3 28 28 H 1.09001 * 109.46782 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47334 * 119.99989 * 2 1 3 30 30 H 1.08997 * 109.46854 * 240.00334 * 2 1 3 31 31 H 1.09008 * 109.46901 * 299.99489 * 5 3 2 32 32 H 1.09003 * 109.47279 * 59.99175 * 5 3 2 33 33 H 1.08996 * 109.47168 * 300.00094 * 6 5 3 34 34 H 1.08991 * 109.47370 * 179.97438 * 6 5 3 35 35 H 1.09004 * 109.46591 * 180.02562 * 7 6 5 36 36 H 1.08999 * 109.47429 * 60.00379 * 7 6 5 37 37 H 1.08995 * 109.47455 * 293.76153 * 10 8 7 38 38 H 1.09000 * 109.47624 * 53.76652 * 10 8 7 39 39 H 1.08996 * 110.37615 * 332.46986 * 12 11 10 40 40 H 1.09005 * 110.37407 * 94.80766 * 12 11 10 41 41 H 1.08999 * 110.99449 * 278.98330 * 13 12 11 42 42 H 1.09006 * 111.02739 * 155.17612 * 13 12 11 43 43 H 0.96699 * 114.00033 * 70.17219 * 15 14 13 44 44 H 0.97001 * 119.99994 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.88825 * 242.66742 * 24 11 10 46 46 H 1.09006 * 109.88399 * 3.84991 * 24 11 10 47 47 H 1.09007 * 109.46999 * 299.99836 * 25 3 2 48 48 H 1.08999 * 109.47404 * 60.00192 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1267 -1.3073 6 6 2.1446 3.5693 -1.3070 7 6 3.6694 3.5717 -1.1811 8 6 4.0743 2.8876 0.1262 9 1 3.6393 3.4263 0.9680 10 6 5.5990 2.8905 0.2524 11 7 5.9822 2.3701 1.5716 12 6 5.7252 3.3693 2.6305 13 6 6.8527 3.1448 3.6685 14 6 8.0594 2.8096 2.7529 15 8 8.6656 4.0054 2.2581 16 6 9.0674 1.9642 3.4879 17 1 8.7767 1.4318 4.3814 18 6 10.3608 1.8705 3.0196 19 7 11.2645 1.2114 3.7115 20 14 10.8297 2.6795 1.4025 21 1 11.1707 4.1047 1.6426 22 1 12.0042 1.9806 0.8216 23 1 9.6870 2.5963 0.4578 24 6 7.4117 2.0101 1.6029 25 6 3.5648 1.4444 0.1256 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 2.0698 1.5877 -2.1492 32 1 0.5488 2.1253 -1.3968 33 1 1.7097 4.1081 -0.4652 34 1 1.8565 4.0565 -2.2385 35 1 4.0323 4.5995 -1.1805 36 1 4.1044 3.0329 -2.0229 37 1 6.0292 2.2602 -0.5258 38 1 5.9709 3.9091 0.1418 39 1 5.7810 4.3782 2.2218 40 1 4.7500 3.1971 3.0862 41 1 6.6172 2.3078 4.3259 42 1 7.0398 4.0508 4.2450 43 1 9.1365 4.5153 2.9314 44 1 12.1746 1.1457 3.3822 45 1 7.5210 0.9413 1.7867 46 1 7.8817 2.2757 0.6559 47 1 3.8533 0.9571 1.0570 48 1 3.9994 0.9054 -0.7162 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592523402.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:55 Heat of formation + Delta-G solvation = -81.509862 kcal Electronic energy + Delta-G solvation = -23534.823179 eV Core-core repulsion = 20394.880442 eV Total energy + Delta-G solvation = -3139.942737 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.43585 -38.30976 -35.41292 -33.96347 -32.31575 -31.72915 -29.56598 -28.95453 -28.25825 -25.34534 -23.87382 -23.48694 -21.98780 -20.63050 -19.89549 -19.70657 -19.39674 -17.28061 -15.50082 -15.42505 -15.12987 -15.01278 -14.82747 -14.43992 -14.11501 -13.64528 -13.51878 -13.36212 -12.92777 -12.81591 -12.56320 -12.27752 -12.24418 -11.86773 -11.66711 -11.57489 -11.43114 -11.29738 -11.06748 -10.87037 -10.77737 -10.64564 -10.58162 -10.55781 -10.30212 -10.10406 -10.08975 -9.85536 -9.77898 -9.12237 -8.54135 -8.48474 -7.67037 -6.16590 -4.26271 3.42650 3.50152 3.64809 4.47211 4.48434 4.59713 4.70028 4.84200 5.04741 5.09815 5.13177 5.19390 5.23612 5.29600 5.41946 5.47071 5.56971 5.60736 5.62777 5.65508 5.69897 5.81070 5.85257 5.92646 5.94462 5.97817 6.02038 6.04019 6.06987 6.13722 6.19263 6.24956 6.28123 6.32318 6.35545 6.41703 6.63483 6.64612 6.68346 6.77791 6.90730 7.23550 7.45919 7.67463 7.73933 8.17593 8.74690 8.88789 9.45616 10.93263 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026796 B = 0.004035 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.662820 B = 6937.698888 C = 7211.979144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.088 4.088 4 H 0.066 0.934 5 C -0.114 4.114 6 C -0.116 4.116 7 C -0.115 4.115 8 C -0.078 4.078 9 H 0.067 0.933 10 C 0.056 3.944 11 N -0.528 5.528 12 C 0.047 3.953 13 C -0.141 4.141 14 C 0.205 3.795 15 O -0.572 6.572 16 C -0.549 4.549 17 H 0.079 0.921 18 C 0.073 3.927 19 N -0.891 5.891 20 Si 0.934 3.066 21 H -0.290 1.290 22 H -0.321 1.321 23 H -0.267 1.267 24 C 0.052 3.948 25 C -0.099 4.099 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.032 0.968 39 H 0.038 0.962 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.370 0.630 44 H 0.266 0.734 45 H 0.089 0.911 46 H 0.052 0.948 47 H 0.076 0.924 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.718 3.012 -8.749 20.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.106 4.106 4 H 0.084 0.916 5 C -0.151 4.151 6 C -0.154 4.154 7 C -0.153 4.153 8 C -0.097 4.097 9 H 0.085 0.915 10 C -0.073 4.073 11 N -0.252 5.252 12 C -0.080 4.080 13 C -0.179 4.179 14 C 0.165 3.835 15 O -0.380 6.380 16 C -0.586 4.586 17 H 0.097 0.903 18 C -0.132 4.132 19 N -0.527 5.527 20 Si 0.769 3.231 21 H -0.217 1.217 22 H -0.252 1.252 23 H -0.193 1.193 24 C -0.075 4.075 25 C -0.137 4.137 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.218 0.782 44 H 0.075 0.925 45 H 0.107 0.893 46 H 0.070 0.930 47 H 0.095 0.905 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.109 2.278 -9.198 21.330 hybrid contribution 1.145 1.288 -0.411 1.771 sum -17.965 3.566 -9.609 20.683 Atomic orbital electron populations 1.21822 0.96360 1.01186 1.01633 1.21562 0.95375 0.96778 1.02029 1.21211 0.96515 0.95352 0.97547 0.91577 1.21633 1.00013 0.95667 0.97825 1.21500 0.95928 0.96790 1.01188 1.21581 0.95487 1.00276 0.97996 1.21105 0.95050 0.96557 0.96963 0.91489 1.22328 0.94834 0.98062 0.92056 1.63637 1.20089 1.38455 1.02998 1.22969 0.98656 0.93336 0.93084 1.23203 0.96044 1.01070 0.97619 1.20366 0.90497 0.82523 0.90155 1.86161 1.71999 1.38624 1.41204 1.21316 0.94094 1.30630 1.12584 0.90297 1.25121 0.96181 0.94260 0.97602 1.69963 1.03194 1.41063 1.38461 0.86018 0.75975 0.77799 0.83352 1.21697 1.25181 1.19329 1.23314 0.84740 1.00614 0.98854 1.21522 0.93269 0.96155 1.02714 0.92933 0.92753 0.93154 0.91863 0.92243 0.92264 0.92341 0.92259 0.92504 0.92433 0.92154 0.91693 0.95004 0.94404 0.91817 0.90720 0.92058 0.78205 0.92505 0.89323 0.92957 0.90493 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.67 37.16 0.36 -0.91 16 2 C -0.12 -1.15 5.40 -26.73 -0.14 -1.29 16 3 C -0.09 -0.91 2.19 -90.62 -0.20 -1.10 16 4 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 5 C -0.11 -1.07 4.96 -26.73 -0.13 -1.20 16 6 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 7 C -0.12 -1.28 5.20 -26.73 -0.14 -1.42 16 8 C -0.08 -1.00 2.24 -90.60 -0.20 -1.21 16 9 H 0.07 0.90 7.55 -51.93 -0.39 0.51 16 10 C 0.06 0.89 4.05 -3.83 -0.02 0.87 16 11 N -0.53 -9.63 4.63 -231.26 -1.07 -10.70 16 12 C 0.05 0.83 5.96 -2.31 -0.01 0.81 16 13 C -0.14 -2.77 6.23 -24.60 -0.15 -2.93 16 14 C 0.20 4.67 0.70 -89.95 -0.06 4.61 16 15 O -0.57 -12.83 9.24 -35.23 -0.33 -13.16 16 16 C -0.55 -14.89 8.64 -34.44 -0.30 -15.18 16 17 H 0.08 2.34 7.97 -52.49 -0.42 1.92 16 18 C 0.07 2.05 5.46 -17.82 -0.10 1.95 16 19 N -0.89 -26.77 13.96 55.43 0.77 -26.00 16 20 Si 0.93 23.43 24.75 -169.99 -4.21 19.22 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.32 -8.23 7.11 56.52 0.40 -7.83 16 23 H -0.27 -6.63 5.11 56.52 0.29 -6.34 16 24 C 0.05 1.13 5.56 -2.83 -0.02 1.11 16 25 C -0.10 -1.22 4.39 -26.71 -0.12 -1.34 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.42 6.56 -51.93 -0.34 0.08 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 32 H 0.06 0.50 6.56 -51.93 -0.34 0.16 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 1.05 7.87 -51.93 -0.41 0.64 16 38 H 0.03 0.54 7.69 -51.93 -0.40 0.14 16 39 H 0.04 0.66 7.53 -51.93 -0.39 0.27 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.07 1.51 7.98 -51.93 -0.41 1.10 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.37 7.55 8.77 45.56 0.40 7.95 16 44 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.09 2.03 7.81 -51.93 -0.41 1.63 16 46 H 0.05 1.19 5.51 -51.93 -0.29 0.90 16 47 H 0.08 1.09 7.79 -51.92 -0.40 0.68 16 48 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 352.24 15.07 5.31 5.31 Total: -1.00 -29.09 352.24 -9.46 -38.54 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -8.55 Total: 5.28 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -1.39 Total: -18.50 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: -0.30 Total: -36.70 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -0.33 Total: -13.16 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -4.21 Total: 19.22 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.09 -9.46 -38.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592523402.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.966 kcal (2) G-P(sol) polarization free energy of solvation -29.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds