Wall clock time and date at job start Tue Mar 31 2020 05:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47107 * 2 1 4 4 H 1.09001 * 109.47149 * 54.99867 * 3 2 1 5 5 C 1.53001 * 109.47374 * 295.00713 * 3 2 1 6 6 C 1.52997 * 109.47556 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.46707 * 59.99618 * 6 5 3 8 8 C 1.53000 * 109.47357 * 299.99909 * 7 6 5 9 9 H 1.08999 * 109.47235 * 300.00589 * 8 7 6 10 10 C 1.52994 * 109.47086 * 180.02562 * 8 7 6 11 11 N 1.46903 * 109.47047 * 173.76182 * 10 8 7 12 12 C 1.47839 * 111.00107 * 285.30755 * 11 10 8 13 13 C 1.54899 * 104.79923 * 213.63406 * 12 11 10 14 14 C 1.55141 * 101.65433 * 37.07119 * 13 12 11 15 15 O 1.42900 * 110.70594 * 82.72684 * 14 13 12 16 16 C 1.50695 * 110.70855 * 205.96427 * 14 13 12 17 17 H 1.08000 * 120.00439 * 18.54655 * 16 14 13 18 18 C 1.37877 * 119.99952 * 198.54472 * 16 14 13 19 19 N 1.31516 * 120.00044 * 175.14452 * 18 16 14 20 20 Si 1.86799 * 120.00065 * 355.14348 * 18 16 14 21 21 H 1.48497 * 109.47208 * 84.97704 * 20 18 16 22 22 H 1.48506 * 109.47191 * 204.97914 * 20 18 16 23 23 H 1.48500 * 109.47086 * 324.97587 * 20 18 16 24 24 C 1.47448 * 111.00243 * 164.46542 * 11 10 8 25 25 C 1.52994 * 109.47332 * 175.00392 * 3 2 1 26 26 H 1.08997 * 109.46854 * 299.99666 * 1 2 3 27 27 H 1.09000 * 109.47245 * 59.99664 * 1 2 3 28 28 H 1.09001 * 109.46782 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47334 * 119.99989 * 2 1 3 30 30 H 1.08997 * 109.46854 * 240.00334 * 2 1 3 31 31 H 1.09008 * 109.46901 * 299.99489 * 5 3 2 32 32 H 1.09003 * 109.47279 * 59.99175 * 5 3 2 33 33 H 1.08996 * 109.47168 * 300.00094 * 6 5 3 34 34 H 1.08991 * 109.47370 * 179.97438 * 6 5 3 35 35 H 1.09004 * 109.46591 * 180.02562 * 7 6 5 36 36 H 1.08999 * 109.47429 * 60.00379 * 7 6 5 37 37 H 1.08995 * 109.47455 * 293.76153 * 10 8 7 38 38 H 1.09000 * 109.47624 * 53.76652 * 10 8 7 39 39 H 1.08996 * 110.37615 * 332.46986 * 12 11 10 40 40 H 1.09005 * 110.37407 * 94.80766 * 12 11 10 41 41 H 1.08999 * 110.99449 * 278.98330 * 13 12 11 42 42 H 1.09006 * 111.02739 * 155.17612 * 13 12 11 43 43 H 0.96699 * 114.00033 * 70.17219 * 15 14 13 44 44 H 0.97001 * 119.99994 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.88825 * 242.66742 * 24 11 10 46 46 H 1.09006 * 109.88399 * 3.84991 * 24 11 10 47 47 H 1.09007 * 109.46999 * 299.99836 * 25 3 2 48 48 H 1.08999 * 109.47404 * 60.00192 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1267 -1.3073 6 6 2.1446 3.5693 -1.3070 7 6 3.6694 3.5717 -1.1811 8 6 4.0743 2.8876 0.1262 9 1 3.6393 3.4263 0.9680 10 6 5.5990 2.8905 0.2524 11 7 5.9822 2.3701 1.5716 12 6 5.7252 3.3693 2.6305 13 6 6.8527 3.1448 3.6685 14 6 8.0594 2.8096 2.7529 15 8 8.6656 4.0054 2.2581 16 6 9.0674 1.9642 3.4879 17 1 8.7767 1.4318 4.3814 18 6 10.3608 1.8705 3.0196 19 7 11.2645 1.2114 3.7115 20 14 10.8297 2.6795 1.4025 21 1 11.1707 4.1047 1.6426 22 1 12.0042 1.9806 0.8216 23 1 9.6870 2.5963 0.4578 24 6 7.4117 2.0101 1.6029 25 6 3.5648 1.4444 0.1256 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 2.0698 1.5877 -2.1492 32 1 0.5488 2.1253 -1.3968 33 1 1.7097 4.1081 -0.4652 34 1 1.8565 4.0565 -2.2385 35 1 4.0323 4.5995 -1.1805 36 1 4.1044 3.0329 -2.0229 37 1 6.0292 2.2602 -0.5258 38 1 5.9709 3.9091 0.1418 39 1 5.7810 4.3782 2.2218 40 1 4.7500 3.1971 3.0862 41 1 6.6172 2.3078 4.3259 42 1 7.0398 4.0508 4.2450 43 1 9.1365 4.5153 2.9314 44 1 12.1746 1.1457 3.3822 45 1 7.5210 0.9413 1.7867 46 1 7.8817 2.2757 0.6559 47 1 3.8533 0.9571 1.0570 48 1 3.9994 0.9054 -0.7162 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592523402.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:54 Heat of formation + Delta-G solvation = -99.980901 kcal Electronic energy + Delta-G solvation = -23535.624143 eV Core-core repulsion = 20394.880442 eV Total energy + Delta-G solvation = -3140.743701 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.69911 -39.61156 -36.93982 -34.96270 -34.46687 -32.88726 -30.79285 -30.05034 -29.89307 -26.91700 -25.40975 -24.35590 -23.03009 -21.90439 -21.45480 -20.79856 -20.51980 -19.30256 -17.20540 -17.04811 -16.49681 -16.15450 -15.91334 -15.63252 -15.46120 -15.02584 -14.69674 -14.54127 -14.31948 -14.08427 -14.03320 -13.60274 -13.54220 -13.33226 -13.08839 -12.73545 -12.54541 -12.42375 -12.32799 -12.23981 -12.12987 -12.02824 -11.91156 -11.81968 -11.65962 -11.48251 -11.22473 -11.19391 -10.77114 -10.74531 -10.58492 -10.33306 -9.17938 -8.37851 -6.49561 1.41053 1.44562 1.63477 2.36918 2.95781 3.08759 3.50152 3.69858 3.87535 3.93266 4.00837 4.16247 4.27286 4.30410 4.34021 4.40029 4.47906 4.53108 4.60821 4.62952 4.64999 4.70497 4.77952 4.83826 4.87070 4.87546 4.94008 5.00896 5.06785 5.13203 5.15850 5.21292 5.26556 5.27195 5.35402 5.37599 5.39235 5.42318 5.45647 5.56739 5.57672 5.66591 5.72201 6.01851 6.08003 6.27668 6.58901 6.97290 7.27716 8.76042 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026796 B = 0.004035 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.662820 B = 6937.698888 C = 7211.979144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.082 4.082 4 H 0.064 0.936 5 C -0.111 4.111 6 C -0.113 4.113 7 C -0.113 4.113 8 C -0.069 4.069 9 H 0.066 0.934 10 C 0.056 3.944 11 N -0.527 5.527 12 C 0.056 3.944 13 C -0.137 4.137 14 C 0.201 3.799 15 O -0.571 6.571 16 C -0.547 4.547 17 H 0.042 0.958 18 C 0.026 3.974 19 N -0.937 5.937 20 Si 0.993 3.007 21 H -0.276 1.276 22 H -0.329 1.329 23 H -0.263 1.263 24 C 0.059 3.941 25 C -0.095 4.095 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.027 0.973 39 H 0.046 0.954 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.380 0.620 44 H 0.267 0.733 45 H 0.067 0.933 46 H 0.042 0.958 47 H 0.055 0.945 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.034 4.613 -10.317 23.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.101 4.101 4 H 0.083 0.917 5 C -0.148 4.148 6 C -0.151 4.151 7 C -0.151 4.151 8 C -0.088 4.088 9 H 0.085 0.915 10 C -0.072 4.072 11 N -0.251 5.251 12 C -0.071 4.071 13 C -0.175 4.175 14 C 0.161 3.839 15 O -0.380 6.380 16 C -0.585 4.585 17 H 0.060 0.940 18 C -0.174 4.174 19 N -0.575 5.575 20 Si 0.825 3.175 21 H -0.203 1.203 22 H -0.261 1.261 23 H -0.188 1.188 24 C -0.069 4.069 25 C -0.133 4.133 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.045 0.955 39 H 0.064 0.936 40 H 0.105 0.895 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.229 0.771 44 H 0.076 0.924 45 H 0.086 0.914 46 H 0.060 0.940 47 H 0.074 0.926 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -21.451 3.898 -10.760 24.313 hybrid contribution 1.849 0.744 0.153 1.999 sum -19.601 4.642 -10.607 22.766 Atomic orbital electron populations 1.21796 0.95077 1.01734 1.02078 1.21549 0.96487 0.96202 1.01515 1.21152 0.94724 0.95957 0.98257 0.91712 1.21616 1.00900 0.95385 0.96923 1.21485 0.94470 0.97012 1.02085 1.21557 0.96834 1.00032 0.96637 1.21036 0.92561 0.97052 0.98156 0.91517 1.22410 0.97024 0.97315 0.90444 1.63647 1.17395 1.39466 1.04627 1.22969 0.98733 0.93435 0.91995 1.23124 0.95360 1.01362 0.97679 1.20299 0.90417 0.82227 0.91004 1.86122 1.72169 1.38089 1.41634 1.21563 0.95123 1.30319 1.11455 0.94009 1.25835 0.96261 0.94910 1.00376 1.70076 1.03760 1.43356 1.40356 0.85063 0.75317 0.77351 0.79755 1.20265 1.26059 1.18838 1.23029 0.86909 0.99302 0.97643 1.21458 0.94980 0.95550 1.01318 0.92837 0.91906 0.92639 0.92913 0.92308 0.92349 0.90914 0.91974 0.91074 0.92224 0.92245 0.92250 0.95517 0.93565 0.89518 0.91812 0.90498 0.77124 0.92407 0.91432 0.93951 0.92642 0.93223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.67 71.98 0.70 -1.45 16 2 C -0.12 -2.12 5.40 30.60 0.17 -1.95 16 3 C -0.08 -1.54 2.19 -10.79 -0.02 -1.56 16 4 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 5 C -0.11 -1.76 4.96 30.59 0.15 -1.61 16 6 C -0.11 -1.81 5.92 30.59 0.18 -1.62 16 7 C -0.11 -2.21 5.20 30.60 0.16 -2.05 16 8 C -0.07 -1.65 2.24 -10.78 -0.02 -1.67 16 9 H 0.07 1.61 7.55 -2.39 -0.02 1.60 16 10 C 0.06 1.71 4.05 86.30 0.35 2.06 16 11 N -0.53 -18.66 4.63 -885.57 -4.10 -22.76 16 12 C 0.06 1.83 5.96 86.77 0.52 2.35 16 13 C -0.14 -5.23 6.23 31.98 0.20 -5.03 16 14 C 0.20 9.07 0.70 -10.36 -0.01 9.07 16 15 O -0.57 -24.60 9.24 -148.98 -1.38 -25.98 16 16 C -0.55 -30.28 8.64 25.60 0.22 -30.06 16 17 H 0.04 2.58 7.97 -2.91 -0.02 2.55 16 18 C 0.03 1.48 5.46 84.65 0.46 1.94 16 19 N -0.94 -57.79 13.96 21.45 0.30 -57.49 16 20 Si 0.99 48.44 24.75 68.60 1.70 50.14 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.33 -16.43 7.11 99.48 0.71 -15.72 16 23 H -0.26 -12.53 5.11 99.48 0.51 -12.03 16 24 C 0.06 2.56 5.56 86.64 0.48 3.04 16 25 C -0.10 -2.24 4.39 30.61 0.13 -2.11 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 0.80 6.56 -2.39 -0.02 0.78 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.07 0.98 6.56 -2.39 -0.02 0.96 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.06 1.86 7.87 -2.39 -0.02 1.84 16 38 H 0.03 0.84 7.69 -2.39 -0.02 0.83 16 39 H 0.05 1.46 7.53 -2.39 -0.02 1.44 16 40 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 41 H 0.06 2.56 7.98 -2.39 -0.02 2.54 16 42 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 43 H 0.38 14.74 8.77 -74.06 -0.65 14.09 16 44 H 0.27 15.55 8.31 -92.71 -0.77 14.77 16 45 H 0.07 3.17 7.81 -2.39 -0.02 3.15 16 46 H 0.04 1.90 5.51 -2.38 -0.01 1.88 16 47 H 0.05 1.54 7.79 -2.38 -0.02 1.52 16 48 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -62.67 352.24 0.24 -62.43 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 0.05 Total: 24.32 kcal Atomic # 6 Polarization: -34.32 SS G_CDS: 3.66 Total: -30.66 kcal Atomic # 7 Polarization: -76.45 SS G_CDS: -3.80 Total: -80.25 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -1.38 Total: -25.98 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 1.70 Total: 50.14 kcal Total: -62.67 0.24 -62.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592523402.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.551 kcal (2) G-P(sol) polarization free energy of solvation -62.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds