Wall clock time and date at job start Tue Mar 31 2020 06:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47158 * 89.99755 * 9 7 5 11 11 H 1.48494 * 109.47116 * 210.00006 * 9 7 5 12 12 H 1.48500 * 109.46922 * 330.00127 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21274 * 119.99855 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99767 * 179.97438 * 14 13 3 17 17 C 1.52998 * 109.47174 * 179.97438 * 16 14 13 18 18 C 1.52990 * 109.47245 * 180.02562 * 17 16 14 19 19 C 1.54239 * 108.89893 * 296.39649 * 18 17 16 20 20 C 1.50548 * 108.49081 * 159.17752 * 19 18 17 21 21 C 1.54066 * 112.41651 * 94.26389 * 20 19 18 22 22 C 1.54071 * 112.81814 * 318.28468 * 21 20 19 23 23 C 1.50470 * 112.49396 * 318.28435 * 22 21 20 24 24 C 1.45544 * 108.89847 * 173.60627 * 18 17 16 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 31 31 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 32 32 H 1.09001 * 109.47037 * 299.99900 * 16 14 13 33 33 H 1.09004 * 109.47137 * 59.99859 * 16 14 13 34 34 H 1.09001 * 109.47019 * 300.00507 * 17 16 14 35 35 H 1.09004 * 109.47014 * 60.00016 * 17 16 14 36 36 H 1.08998 * 108.87564 * 54.99959 * 18 17 16 37 37 H 1.09005 * 109.62980 * 278.97923 * 19 18 17 38 38 H 1.09003 * 109.62950 * 39.55295 * 19 18 17 39 39 H 1.09004 * 108.92020 * 333.51579 * 20 19 18 40 40 H 1.08993 * 108.84515 * 214.96664 * 20 19 18 41 41 H 1.09004 * 108.81923 * 197.42196 * 21 20 19 42 42 H 1.09006 * 108.72715 * 79.08056 * 21 20 19 43 43 H 1.08997 * 108.88034 * 197.50406 * 22 21 20 44 44 H 1.09002 * 108.87712 * 79.05838 * 22 21 20 45 45 H 1.08998 * 109.63187 * 334.44126 * 23 22 21 46 46 H 1.09004 * 109.62863 * 213.85872 * 23 22 21 47 47 H 1.09009 * 108.89324 * 303.44420 * 24 18 17 48 48 H 1.08999 * 108.89169 * 62.02740 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.4417 2.1143 2.0850 11 1 6.4395 -0.3097 2.1551 12 1 6.6135 0.8416 0.0279 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3395 2.6319 -0.4345 16 6 0.0367 3.3385 -2.6546 17 6 -1.3826 3.8942 -2.5214 18 6 -1.7874 4.5780 -3.8288 19 6 -0.8577 5.7848 -4.0700 20 6 -0.8972 6.1329 -5.5341 21 6 -1.9299 7.2320 -5.8490 22 6 -3.2543 7.0442 -5.0845 23 6 -3.7001 5.6075 -5.0496 24 6 -3.1873 4.9669 -3.7436 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0610 2.9499 31 1 2.2720 2.1231 -1.9978 32 1 0.7281 4.1540 -2.8669 33 1 0.0680 2.6143 -3.4688 34 1 -2.0737 3.0784 -2.3093 35 1 -1.4144 4.6182 -1.7072 36 1 -1.6669 3.8703 -4.6489 37 1 -1.2008 6.6351 -3.4804 38 1 0.1615 5.5249 -3.7838 39 1 -1.1498 5.2383 -6.1034 40 1 0.0900 6.4784 -5.8407 41 1 -2.1375 7.2234 -6.9191 42 1 -1.5041 8.1993 -5.5819 43 1 -4.0278 7.6419 -5.5668 44 1 -3.1244 7.3981 -4.0617 45 1 -3.2863 5.0747 -5.9057 46 1 -4.7888 5.5611 -5.0772 47 1 -3.7865 4.0830 -3.5249 48 1 -3.3057 5.6831 -2.9305 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594339736.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:04 Heat of formation + Delta-G solvation = -85.563135 kcal Electronic energy + Delta-G solvation = -22805.141818 eV Core-core repulsion = 19665.023318 eV Total energy + Delta-G solvation = -3140.118500 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.64865 -38.69027 -35.21048 -34.26279 -32.38429 -32.26825 -31.09462 -29.93931 -27.04486 -25.59347 -24.65388 -23.09572 -22.11821 -20.27863 -19.98335 -19.38752 -19.18368 -17.06175 -16.03107 -15.65456 -15.30644 -15.19064 -14.69217 -14.61790 -14.29797 -13.83158 -13.45307 -13.17462 -12.98649 -12.68645 -12.58279 -12.27323 -12.13130 -11.82814 -11.66270 -11.42055 -11.23518 -11.00844 -10.91986 -10.82500 -10.76181 -10.55970 -10.50728 -10.44156 -10.30176 -10.28130 -10.13494 -10.04285 -9.59081 -9.01876 -8.84209 -8.46498 -7.74014 -6.10114 -4.19340 3.25268 3.31979 3.33742 3.53328 4.15654 4.38044 4.47736 4.60093 4.67608 4.94481 5.01356 5.07397 5.14603 5.17951 5.21030 5.32443 5.43174 5.50015 5.57757 5.62306 5.72126 5.86059 5.87600 5.96216 6.00552 6.00881 6.03778 6.10124 6.12922 6.22308 6.28667 6.35899 6.42309 6.48040 6.49530 6.57174 6.70235 7.07732 7.23978 7.41614 7.53699 7.65498 7.78380 7.94605 8.22023 8.75453 8.82423 9.24299 9.48817 10.95195 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029534 B = 0.003185 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.832640 B = 8790.435637 C = 9466.914816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.712 5.712 14 C 0.498 3.502 15 O -0.552 6.552 16 C -0.144 4.144 17 C -0.098 4.098 18 C -0.085 4.085 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.117 4.117 24 C -0.113 4.113 25 H 0.021 0.979 26 H 0.039 0.961 27 H 0.049 0.951 28 H 0.098 0.902 29 H 0.030 0.970 30 H 0.264 0.736 31 H 0.387 0.613 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.053 0.947 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.059 0.941 47 H 0.059 0.941 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.018 9.932 -15.590 21.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.065 0.935 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.360 5.360 14 C 0.283 3.717 15 O -0.431 6.431 16 C -0.184 4.184 17 C -0.136 4.136 18 C -0.104 4.104 19 C -0.155 4.155 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.154 4.154 24 C -0.151 4.151 25 H 0.040 0.960 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.116 0.884 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.219 0.781 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.077 0.923 47 H 0.078 0.922 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.539 9.794 -14.711 20.576 hybrid contribution 1.385 -0.067 -0.256 1.410 sum -9.154 9.727 -14.967 20.060 Atomic orbital electron populations 1.21832 0.98377 0.97901 1.01246 1.21925 0.92596 0.99932 1.02145 1.18742 0.94047 0.89146 0.81293 0.93464 1.21257 0.90866 1.38851 1.06206 0.92167 1.24896 0.98547 0.94854 0.95442 1.69898 1.35083 1.37700 1.09331 0.86471 0.84969 0.77622 0.78165 1.20594 1.21093 1.19870 1.46520 1.14893 1.56221 1.18367 1.20490 0.82587 0.79265 0.89374 1.90651 1.51481 1.60074 1.40931 1.21784 0.98767 1.00905 0.96943 1.21425 0.95114 1.00294 0.96778 1.20136 0.95041 0.97004 0.98199 1.21517 0.99953 0.97949 0.96066 1.21353 0.98440 0.98782 0.97015 1.21912 0.95172 0.98702 0.99606 1.21345 0.96563 0.96899 1.00841 1.21325 0.99917 0.95956 0.98240 1.20533 0.96176 1.00893 0.97451 0.95983 0.94240 0.93214 0.88407 0.95149 0.92610 0.78121 0.89492 0.89937 0.91443 0.91359 0.91603 0.91719 0.91306 0.92140 0.92524 0.92676 0.92560 0.92789 0.92022 0.91747 0.92267 0.92228 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.51 37.16 0.32 -2.78 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.28 16 3 C 0.27 6.84 2.24 -69.08 -0.15 6.68 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.17 8.73 -34.44 -0.30 -14.47 16 6 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.93 11.29 55.43 0.63 -24.31 16 9 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 N -0.71 -14.74 5.02 -54.93 -0.28 -15.02 16 14 C 0.50 9.69 6.40 -10.98 -0.07 9.62 16 15 O -0.55 -12.79 13.12 5.56 0.07 -12.72 16 16 C -0.14 -1.99 5.47 -27.88 -0.15 -2.15 16 17 C -0.10 -1.29 3.89 -26.74 -0.10 -1.39 16 18 C -0.09 -0.87 1.71 -93.49 -0.16 -1.03 16 19 C -0.12 -1.12 4.91 -27.31 -0.13 -1.26 16 20 C -0.12 -0.99 5.32 -27.40 -0.15 -1.14 16 21 C -0.12 -0.90 5.85 -25.62 -0.15 -1.05 16 22 C -0.12 -0.94 5.31 -27.44 -0.15 -1.08 16 23 C -0.12 -0.96 5.61 -27.35 -0.15 -1.11 16 24 C -0.11 -1.08 4.44 -29.60 -0.13 -1.21 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.04 0.87 5.64 -51.93 -0.29 0.57 16 27 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 28 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.39 6.97 8.54 -40.82 -0.35 6.62 16 32 H 0.09 1.07 6.14 -51.93 -0.32 0.75 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.97 8.01 -51.93 -0.42 0.55 16 35 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 36 H 0.07 0.65 7.46 -51.93 -0.39 0.27 16 37 H 0.06 0.64 6.97 -51.93 -0.36 0.27 16 38 H 0.07 0.68 5.82 -51.93 -0.30 0.38 16 39 H 0.06 0.50 6.63 -51.93 -0.34 0.16 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.52 6.62 -51.93 -0.34 0.17 16 45 H 0.06 0.53 6.98 -51.93 -0.36 0.16 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.58 8.04 -51.92 -0.42 0.16 16 48 H 0.06 0.61 7.46 -51.93 -0.39 0.22 16 LS Contribution 354.42 15.07 5.34 5.34 Total: -1.00 -29.39 354.42 -9.72 -39.11 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -8.74 Total: 5.86 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -1.73 Total: -13.95 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.35 Total: -39.32 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.07 Total: -12.72 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.39 -9.72 -39.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594339736.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.450 kcal (2) G-P(sol) polarization free energy of solvation -29.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds