Wall clock time and date at job start Tue Mar 31 2020 06:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48500 * 109.47146 * 59.99948 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21279 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.47380 * 179.97438 * 16 14 13 18 18 C 1.52995 * 109.47165 * 180.02562 * 17 16 14 19 19 C 1.54240 * 108.89765 * 296.39909 * 18 17 16 20 20 C 1.50551 * 108.48727 * 159.17649 * 19 18 17 21 21 C 1.54073 * 112.41269 * 94.26624 * 20 19 18 22 22 C 1.54064 * 112.81500 * 318.28008 * 21 20 19 23 23 C 1.50474 * 112.49899 * 318.28283 * 22 21 20 24 24 C 1.45542 * 108.89574 * 173.60920 * 18 17 16 25 25 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 26 26 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 28 28 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 29 29 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 30 30 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 31 31 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 32 32 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 33 33 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 34 34 H 1.08998 * 109.46766 * 300.00274 * 17 16 14 35 35 H 1.08998 * 109.46537 * 60.00164 * 17 16 14 36 36 H 1.09004 * 108.87568 * 55.00102 * 18 17 16 37 37 H 1.08998 * 109.62863 * 278.97480 * 19 18 17 38 38 H 1.09001 * 109.63274 * 39.55034 * 19 18 17 39 39 H 1.09001 * 108.92339 * 333.51746 * 20 19 18 40 40 H 1.08994 * 108.84191 * 214.96023 * 20 19 18 41 41 H 1.09001 * 108.81381 * 197.42456 * 21 20 19 42 42 H 1.08991 * 108.72887 * 79.08460 * 21 20 19 43 43 H 1.09009 * 108.88001 * 197.51055 * 22 21 20 44 44 H 1.09000 * 108.87848 * 79.06712 * 22 21 20 45 45 H 1.08999 * 109.62980 * 334.45068 * 23 22 21 46 46 H 1.09003 * 109.63311 * 213.86312 * 23 22 21 47 47 H 1.08998 * 108.89027 * 303.43809 * 24 18 17 48 48 H 1.08993 * 108.89910 * 62.03124 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5325 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6305 0.4601 16 6 0.0606 3.3290 2.6792 17 6 -1.3593 3.8864 2.5602 18 6 -1.7521 4.5662 3.8733 19 6 -1.7819 3.5074 4.9946 20 6 -1.6550 4.2113 6.3193 21 6 -3.0243 4.5099 6.9594 22 6 -4.0646 5.0097 5.9388 23 6 -3.4835 5.9923 4.9584 24 6 -3.0394 5.2221 3.6979 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 5.9548 0.8552 -0.5318 31 1 2.2902 2.1166 1.9978 32 1 0.0991 2.6017 3.4901 33 1 0.7539 4.1436 2.8885 34 1 -1.3973 4.6138 1.7493 35 1 -2.0528 3.0720 2.3506 36 1 -1.0028 5.3189 4.1186 37 1 -2.7243 2.9610 4.9572 38 1 -0.9492 2.8157 4.8673 39 1 -1.1228 5.1509 6.1709 40 1 -1.0782 3.5830 6.9979 41 1 -2.8941 5.2703 7.7294 42 1 -3.3989 3.5988 7.4257 43 1 -4.8832 5.4894 6.4755 44 1 -4.4588 4.1547 5.3895 45 1 -2.6230 6.4901 5.4054 46 1 -4.2385 6.7309 4.6891 47 1 -2.9688 5.9206 2.8641 48 1 -3.7908 4.4681 3.4636 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594339737.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:06 Heat of formation + Delta-G solvation = -85.283465 kcal Electronic energy + Delta-G solvation = -22906.942018 eV Core-core repulsion = 19766.835645 eV Total energy + Delta-G solvation = -3140.106373 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.74644 -38.85882 -35.41456 -34.35668 -32.44961 -32.34158 -31.54057 -30.09783 -27.27749 -25.66174 -24.70155 -22.63202 -22.11623 -20.40128 -20.15361 -19.48850 -19.36548 -17.74342 -16.42291 -15.72524 -15.63687 -15.30889 -14.73032 -14.70630 -14.18291 -13.75819 -13.42556 -13.26783 -13.09138 -12.82296 -12.52274 -12.41821 -12.32955 -12.29686 -11.93581 -11.78019 -11.59572 -11.04788 -10.90739 -10.81867 -10.67216 -10.61039 -10.55273 -10.50198 -10.43592 -10.29845 -10.15294 -9.86892 -9.55483 -9.10479 -8.96305 -8.32747 -8.01891 -6.56730 -4.20618 3.34771 3.39951 3.45353 3.60470 4.04752 4.40825 4.42853 4.52457 4.62387 4.88925 4.95176 5.00698 5.08729 5.12734 5.17732 5.26813 5.33986 5.41360 5.48652 5.57819 5.65220 5.78318 5.81150 5.87700 5.94672 5.96356 5.97950 6.04798 6.06452 6.09902 6.12007 6.16167 6.23123 6.28188 6.31307 6.40759 6.48950 6.72608 6.81710 6.99577 7.08588 7.39528 7.47724 7.69665 8.24604 8.55259 8.73448 9.07242 9.48633 10.83756 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.034799 B = 0.003230 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.435785 B = 8666.847211 C = 8848.046317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.139 4.139 3 C 0.246 3.754 4 H 0.040 0.960 5 C -0.616 4.616 6 H 0.060 0.940 7 C 0.038 3.962 8 N -0.900 5.900 9 Si 1.041 2.959 10 H -0.284 1.284 11 H -0.269 1.269 12 H -0.280 1.280 13 N -0.705 5.705 14 C 0.498 3.502 15 O -0.554 6.554 16 C -0.144 4.144 17 C -0.098 4.098 18 C -0.086 4.086 19 C -0.117 4.117 20 C -0.119 4.119 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.117 4.117 24 C -0.113 4.113 25 H 0.050 0.950 26 H 0.029 0.971 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.049 0.951 30 H 0.268 0.732 31 H 0.391 0.609 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.059 0.941 47 H 0.059 0.941 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.942 7.636 15.149 23.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.178 4.178 3 C 0.143 3.857 4 H 0.058 0.942 5 C -0.654 4.654 6 H 0.079 0.921 7 C -0.168 4.168 8 N -0.533 5.533 9 Si 0.869 3.131 10 H -0.210 1.210 11 H -0.195 1.195 12 H -0.207 1.207 13 N -0.353 5.353 14 C 0.284 3.716 15 O -0.433 6.433 16 C -0.184 4.184 17 C -0.136 4.136 18 C -0.104 4.104 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.155 4.155 24 C -0.151 4.151 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.224 0.776 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.399 7.078 12.893 22.028 hybrid contribution 0.422 0.531 2.086 2.194 sum -15.977 7.608 14.979 23.184 Atomic orbital electron populations 1.21876 0.97398 0.98737 1.01969 1.22353 0.93792 0.99892 1.01717 1.19010 0.95652 0.88517 0.82554 0.94218 1.22114 0.89855 1.49360 1.04061 0.92147 1.25684 0.97543 0.92378 1.01224 1.70874 1.07091 1.41057 1.34293 0.84104 0.75467 0.77707 0.75837 1.20973 1.19505 1.20652 1.46280 1.14845 1.56199 1.17933 1.20573 0.82424 0.79088 0.89516 1.90644 1.50951 1.60110 1.41612 1.21779 0.98760 1.01165 0.96663 1.21432 0.94992 1.00632 0.96564 1.20140 0.97743 0.97274 0.95246 1.21514 1.02340 0.97782 0.93808 1.21356 0.96779 1.00584 0.96908 1.21909 0.95181 1.00517 0.97788 1.21345 0.97829 0.99148 0.97319 1.21328 1.00617 0.97705 0.95806 1.20529 0.97544 0.99376 0.97600 0.93080 0.95207 0.93248 0.91413 0.93194 0.92160 0.77599 0.89416 0.89680 0.91362 0.91365 0.91529 0.91716 0.91392 0.92103 0.92510 0.92634 0.92554 0.92753 0.92048 0.91718 0.92227 0.92205 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.53 37.15 0.32 -2.61 16 2 C -0.14 -3.14 5.28 -26.73 -0.14 -3.28 16 3 C 0.25 5.92 1.82 -69.08 -0.13 5.80 16 4 H 0.04 1.05 6.26 -51.93 -0.32 0.72 16 5 C -0.62 -16.77 9.01 -34.44 -0.31 -17.08 16 6 H 0.06 1.72 7.96 -52.48 -0.42 1.30 16 7 C 0.04 1.08 5.32 -17.82 -0.09 0.98 16 8 N -0.90 -26.97 13.69 55.43 0.76 -26.21 16 9 Si 1.04 25.37 26.27 -169.99 -4.47 20.90 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.13 5.67 56.52 0.32 -5.81 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.70 -14.17 5.03 -54.94 -0.28 -14.45 16 14 C 0.50 9.26 6.42 -10.99 -0.07 9.19 16 15 O -0.55 -12.07 13.12 5.56 0.07 -12.00 16 16 C -0.14 -1.90 5.47 -27.88 -0.15 -2.06 16 17 C -0.10 -1.22 3.89 -26.73 -0.10 -1.33 16 18 C -0.09 -0.83 1.71 -93.49 -0.16 -0.99 16 19 C -0.12 -1.06 4.91 -27.31 -0.13 -1.20 16 20 C -0.12 -0.96 5.32 -27.40 -0.15 -1.10 16 21 C -0.12 -0.87 5.85 -25.62 -0.15 -1.02 16 22 C -0.12 -0.90 5.31 -27.44 -0.15 -1.04 16 23 C -0.12 -0.92 5.61 -27.34 -0.15 -1.08 16 24 C -0.11 -1.03 4.44 -29.60 -0.13 -1.16 16 25 H 0.05 1.10 7.88 -51.93 -0.41 0.69 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 1.00 5.63 -51.92 -0.29 0.70 16 28 H 0.07 1.60 4.74 -51.92 -0.25 1.36 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.27 7.95 8.73 -40.82 -0.36 7.59 16 31 H 0.39 7.04 8.53 -40.82 -0.35 6.69 16 32 H 0.09 1.01 6.14 -51.93 -0.32 0.69 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.94 8.01 -51.93 -0.42 0.52 16 35 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 36 H 0.07 0.64 7.46 -51.93 -0.39 0.25 16 37 H 0.06 0.60 6.97 -51.93 -0.36 0.24 16 38 H 0.07 0.64 5.82 -51.93 -0.30 0.33 16 39 H 0.06 0.49 6.63 -51.93 -0.34 0.15 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 44 H 0.06 0.49 6.62 -51.93 -0.34 0.15 16 45 H 0.06 0.51 6.98 -51.93 -0.36 0.15 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.56 8.04 -51.93 -0.42 0.14 16 48 H 0.06 0.57 7.46 -51.93 -0.39 0.19 16 LS Contribution 349.98 15.07 5.27 5.27 Total: -1.00 -30.30 349.98 -9.05 -39.35 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -8.72 Total: 5.09 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -1.70 Total: -17.96 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.48 Total: -40.66 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.07 Total: -12.00 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -4.47 Total: 20.90 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.30 -9.05 -39.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594339737.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.930 kcal (2) G-P(sol) polarization free energy of solvation -30.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds