Wall clock time and date at job start Tue Mar 31 2020 05:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46745 * 2 1 4 4 C 1.53008 * 109.46522 * 184.87880 * 3 2 1 5 5 H 1.09008 * 109.46584 * 306.22605 * 4 3 2 6 6 C 1.50697 * 109.46953 * 186.23296 * 4 3 2 7 7 O 1.21287 * 119.99715 * 322.42778 * 6 4 3 8 8 N 1.34773 * 120.00313 * 142.43118 * 6 4 3 9 9 C 1.46929 * 120.62923 * 355.53763 * 8 6 4 10 10 C 1.53188 * 108.77420 * 126.39295 * 9 8 6 11 11 C 1.53035 * 109.31752 * 54.63624 * 10 9 8 12 12 C 1.53042 * 109.53601 * 298.63479 * 11 10 9 13 13 H 1.09002 * 109.49661 * 301.37791 * 12 11 10 14 14 C 1.50700 * 109.50126 * 181.31412 * 12 11 10 15 15 H 1.08001 * 120.00272 * 245.45006 * 14 12 11 16 16 C 1.37880 * 119.99550 * 65.16299 * 14 12 11 17 17 N 1.31508 * 120.00376 * 355.50940 * 16 14 12 18 18 Si 1.86804 * 119.99707 * 175.50204 * 16 14 12 19 19 H 1.48496 * 109.46976 * 95.00570 * 18 16 14 20 20 H 1.48501 * 109.47008 * 215.00169 * 18 16 14 21 21 H 1.48497 * 109.47330 * 335.00550 * 18 16 14 22 22 C 1.46934 * 120.60862 * 175.51672 * 8 6 4 23 23 C 1.52998 * 109.47485 * 66.22947 * 4 3 2 24 24 C 1.53000 * 109.46699 * 63.98817 * 23 4 3 25 25 C 1.52997 * 109.47033 * 183.98757 * 23 4 3 26 26 H 1.09004 * 109.46596 * 300.00275 * 1 2 3 27 27 H 1.08994 * 109.46958 * 60.00074 * 1 2 3 28 28 H 1.08989 * 109.47156 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46865 * 240.00268 * 2 1 3 30 30 H 1.08994 * 109.46958 * 119.99926 * 2 1 3 31 31 H 1.09000 * 109.47244 * 64.87804 * 3 2 1 32 32 H 1.08993 * 109.47351 * 304.87233 * 3 2 1 33 33 H 1.08997 * 109.58620 * 6.60320 * 9 8 6 34 34 H 1.09001 * 109.58545 * 246.18121 * 9 8 6 35 35 H 1.09007 * 109.49968 * 294.68062 * 10 9 8 36 36 H 1.09006 * 109.49718 * 174.58738 * 10 9 8 37 37 H 1.08993 * 109.46413 * 178.61835 * 11 10 9 38 38 H 1.08997 * 109.46257 * 58.65001 * 11 10 9 39 39 H 0.96998 * 120.00564 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.56385 * 113.80301 * 22 8 6 41 41 H 1.09002 * 109.61373 * 353.38090 * 22 8 6 42 42 H 1.08999 * 109.46894 * 303.99119 * 23 4 3 43 43 H 1.08997 * 109.47290 * 64.99857 * 24 23 4 44 44 H 1.09008 * 109.46844 * 184.99493 * 24 23 4 45 45 H 1.09004 * 109.47313 * 304.98715 * 24 23 4 46 46 H 1.08999 * 109.47106 * 63.21705 * 25 23 4 47 47 H 1.09001 * 109.46429 * 183.21105 * 25 23 4 48 48 H 1.08992 * 109.47441 * 303.21052 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5652 1.4442 -0.1227 5 1 3.9930 0.8140 0.6571 6 6 4.0799 2.8522 0.0308 7 8 3.4563 3.7804 -0.4391 8 7 5.2330 3.0802 0.6901 9 6 5.9492 1.9790 1.3483 10 6 7.3971 1.9639 0.8483 11 6 8.0236 3.3424 1.0699 12 6 7.2475 4.3917 0.2707 13 1 7.2647 4.1293 -0.7871 14 6 7.8846 5.7437 0.4639 15 1 7.3436 6.5280 0.9724 16 6 9.1606 5.9776 -0.0034 17 7 9.8550 4.9972 -0.5382 18 14 9.9029 7.6871 0.1233 19 1 10.7200 7.7816 1.3596 20 1 10.7637 7.9418 -1.0597 21 1 8.8151 8.6969 0.1705 22 6 5.7977 4.4347 0.7635 23 6 3.9671 0.9010 -1.4954 24 6 3.4504 1.8406 -2.5868 25 6 5.4919 0.8094 -1.5811 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.7498 1.9305 0.9304 32 1 1.6072 1.9809 -0.8431 33 1 5.4680 1.0321 1.1034 34 1 5.9370 2.1289 2.4279 35 1 7.4123 1.7240 -0.2150 36 1 7.9644 1.2136 1.3991 37 1 9.0615 3.3273 0.7374 38 1 7.9857 3.5923 2.1301 39 1 10.7525 5.1617 -0.8673 40 1 5.7727 4.7851 1.7953 41 1 5.2171 5.1078 0.1327 42 1 3.5351 -0.0900 -1.6346 43 1 3.9493 2.8059 -2.5013 44 1 3.6589 1.4094 -3.5660 45 1 2.3750 1.9757 -2.4708 46 1 5.8552 0.0965 -0.8409 47 1 5.7803 0.4767 -2.5782 48 1 5.9264 1.7896 -1.3853 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597906842.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:23 Heat of formation + Delta-G solvation = -70.568673 kcal Electronic energy + Delta-G solvation = -24109.410091 eV Core-core repulsion = 20969.941799 eV Total energy + Delta-G solvation = -3139.468291 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.26475 -37.30437 -36.15670 -33.85182 -33.34589 -31.33910 -30.33653 -29.29075 -27.00901 -25.40560 -24.96612 -23.61121 -21.91184 -21.63764 -20.66582 -18.91310 -17.89137 -16.96227 -16.18464 -15.60205 -15.42032 -14.93443 -14.60798 -13.93891 -13.77218 -13.62201 -13.42925 -13.26298 -12.97936 -12.75603 -12.61580 -12.05749 -11.99520 -11.94840 -11.90486 -11.77891 -11.42975 -11.15229 -11.00655 -10.96546 -10.85591 -10.73090 -10.62060 -10.41623 -10.28655 -10.12419 -9.90086 -9.71639 -9.43470 -9.06240 -8.79272 -8.36649 -7.83002 -6.02682 -4.08512 3.13923 3.29275 3.36775 3.41119 3.60581 4.43034 4.66929 4.71721 4.90414 5.04867 5.06858 5.14475 5.27255 5.31162 5.38240 5.54798 5.59201 5.66889 5.67813 5.72103 5.79550 5.83593 5.86251 5.89538 6.00541 6.10348 6.13016 6.17158 6.20250 6.27419 6.31914 6.37196 6.43393 6.50588 6.54113 6.63100 6.71418 6.83882 7.01404 7.18791 7.34667 7.68736 7.92475 8.05128 8.08754 8.38297 8.75045 8.95793 9.56284 11.03623 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028706 B = 0.004337 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.167377 B = 6454.794799 C = 6594.671676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.105 4.105 4 C -0.109 4.109 5 H 0.088 0.912 6 C 0.518 3.482 7 O -0.550 6.550 8 N -0.603 5.603 9 C 0.105 3.895 10 C -0.140 4.140 11 C -0.109 4.109 12 C 0.042 3.958 13 H 0.031 0.969 14 C -0.515 4.515 15 H 0.056 0.944 16 C 0.064 3.936 17 N -0.888 5.888 18 Si 0.891 3.109 19 H -0.282 1.282 20 H -0.286 1.286 21 H -0.273 1.273 22 C 0.117 3.883 23 C -0.080 4.080 24 C -0.150 4.150 25 C -0.161 4.161 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.090 0.910 38 H 0.034 0.966 39 H 0.260 0.740 40 H 0.052 0.948 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.049 0.951 45 H 0.058 0.942 46 H 0.055 0.945 47 H 0.055 0.945 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.574 -12.805 1.309 17.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.143 4.143 4 C -0.130 4.130 5 H 0.106 0.894 6 C 0.306 3.694 7 O -0.429 6.429 8 N -0.334 5.334 9 C -0.018 4.018 10 C -0.178 4.178 11 C -0.147 4.147 12 C 0.022 3.978 13 H 0.049 0.951 14 C -0.553 4.553 15 H 0.075 0.925 16 C -0.137 4.137 17 N -0.527 5.527 18 Si 0.719 3.281 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.004 4.004 23 C -0.099 4.099 24 C -0.207 4.207 25 C -0.218 4.218 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.719 -12.327 0.986 17.037 hybrid contribution 0.699 0.838 0.186 1.107 sum -11.020 -11.488 1.172 15.962 Atomic orbital electron populations 1.21761 0.95968 1.01268 1.01892 1.21595 0.95755 0.96873 1.02023 1.21519 0.93020 0.96650 1.03063 1.21518 0.97212 0.94818 0.99432 0.89366 1.20400 0.80586 0.90704 0.77753 1.90636 1.57469 1.45475 1.49276 1.48328 1.22392 1.10319 1.52406 1.21844 0.93907 0.89430 0.96602 1.22122 0.94052 1.00379 1.01229 1.21611 1.02906 0.91439 0.98790 1.18965 0.88070 0.94876 0.95848 0.95120 1.21080 0.99854 0.96896 1.37484 0.92545 1.24930 0.96985 0.96779 0.95052 1.69893 1.11029 1.30943 1.40794 0.86594 0.79140 0.84871 0.77505 1.20811 1.21198 1.19800 1.21977 0.97095 0.80807 1.00547 1.21025 0.96477 0.99196 0.93167 1.21939 1.01515 1.00178 0.97115 1.22156 0.94825 1.03230 1.01615 0.92847 0.92707 0.92975 0.91626 0.92191 0.92044 0.90425 0.90691 0.92220 0.91703 0.92683 0.89194 0.94678 0.93025 0.93011 0.90401 0.90485 0.91605 0.93239 0.92322 0.92589 0.92632 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.13 -1.16 5.82 -26.73 -0.16 -1.32 16 3 C -0.10 -1.26 4.15 -26.73 -0.11 -1.37 16 4 C -0.11 -1.44 1.58 -91.77 -0.15 -1.59 16 5 H 0.09 1.04 5.61 -51.92 -0.29 0.75 16 6 C 0.52 9.19 5.04 -10.99 -0.06 9.13 16 7 O -0.55 -11.60 14.42 5.55 0.08 -11.52 16 8 N -0.60 -11.03 2.51 -172.76 -0.43 -11.46 16 9 C 0.11 1.62 5.34 -3.71 -0.02 1.60 16 10 C -0.14 -2.42 5.92 -26.62 -0.16 -2.58 16 11 C -0.11 -2.42 5.01 -26.69 -0.13 -2.55 16 12 C 0.04 1.01 2.19 -91.65 -0.20 0.81 16 13 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 14 C -0.51 -13.92 8.50 -34.44 -0.29 -14.22 16 15 H 0.06 1.52 7.75 -52.49 -0.41 1.11 16 16 C 0.06 1.75 5.36 -17.82 -0.10 1.65 16 17 N -0.89 -24.87 11.53 55.43 0.64 -24.23 16 18 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 C 0.12 2.54 5.65 -3.71 -0.02 2.52 16 23 C -0.08 -1.00 2.57 -90.62 -0.23 -1.23 16 24 C -0.15 -2.08 8.32 37.16 0.31 -1.77 16 25 C -0.16 -2.15 7.16 37.16 0.27 -1.89 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.58 6.32 -51.93 -0.33 0.25 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.03 6.07 -51.93 -0.32 0.71 16 33 H 0.07 0.94 4.28 -51.93 -0.22 0.72 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 1.16 5.79 -51.93 -0.30 0.86 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.09 2.26 6.29 -51.93 -0.33 1.93 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.08 1.83 7.03 -51.93 -0.37 1.46 16 42 H 0.08 0.80 6.34 -51.93 -0.33 0.47 16 43 H 0.06 1.13 6.64 -51.93 -0.35 0.79 16 44 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 45 H 0.06 0.78 6.19 -51.93 -0.32 0.46 16 46 H 0.06 0.66 7.54 -51.93 -0.39 0.27 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.07 1.20 5.06 -51.93 -0.26 0.94 16 LS Contribution 348.75 15.07 5.26 5.26 Total: -1.00 -29.03 348.75 -8.57 -37.60 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -8.41 Total: 1.94 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -0.68 Total: -13.71 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.21 Total: -35.69 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.08 Total: -11.52 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.03 -8.57 -37.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906842.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.971 kcal (2) G-P(sol) polarization free energy of solvation -29.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds