Wall clock time and date at job start Tue Mar 31 2020 05:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46745 * 2 1 4 4 C 1.53008 * 109.46522 * 184.87880 * 3 2 1 5 5 H 1.09008 * 109.46584 * 306.22605 * 4 3 2 6 6 C 1.50697 * 109.46953 * 186.23296 * 4 3 2 7 7 O 1.21287 * 119.99715 * 322.42778 * 6 4 3 8 8 N 1.34773 * 120.00313 * 142.43118 * 6 4 3 9 9 C 1.46929 * 120.62923 * 355.53763 * 8 6 4 10 10 C 1.53188 * 108.77420 * 126.39295 * 9 8 6 11 11 C 1.53035 * 109.31752 * 54.63624 * 10 9 8 12 12 C 1.53042 * 109.53601 * 298.63479 * 11 10 9 13 13 H 1.09002 * 109.49661 * 301.37791 * 12 11 10 14 14 C 1.50700 * 109.50126 * 181.31412 * 12 11 10 15 15 H 1.08001 * 120.00272 * 245.45006 * 14 12 11 16 16 C 1.37880 * 119.99550 * 65.16299 * 14 12 11 17 17 N 1.31508 * 120.00376 * 355.50940 * 16 14 12 18 18 Si 1.86804 * 119.99707 * 175.50204 * 16 14 12 19 19 H 1.48496 * 109.46976 * 95.00570 * 18 16 14 20 20 H 1.48501 * 109.47008 * 215.00169 * 18 16 14 21 21 H 1.48497 * 109.47330 * 335.00550 * 18 16 14 22 22 C 1.46934 * 120.60862 * 175.51672 * 8 6 4 23 23 C 1.52998 * 109.47485 * 66.22947 * 4 3 2 24 24 C 1.53000 * 109.46699 * 63.98817 * 23 4 3 25 25 C 1.52997 * 109.47033 * 183.98757 * 23 4 3 26 26 H 1.09004 * 109.46596 * 300.00275 * 1 2 3 27 27 H 1.08994 * 109.46958 * 60.00074 * 1 2 3 28 28 H 1.08989 * 109.47156 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46865 * 240.00268 * 2 1 3 30 30 H 1.08994 * 109.46958 * 119.99926 * 2 1 3 31 31 H 1.09000 * 109.47244 * 64.87804 * 3 2 1 32 32 H 1.08993 * 109.47351 * 304.87233 * 3 2 1 33 33 H 1.08997 * 109.58620 * 6.60320 * 9 8 6 34 34 H 1.09001 * 109.58545 * 246.18121 * 9 8 6 35 35 H 1.09007 * 109.49968 * 294.68062 * 10 9 8 36 36 H 1.09006 * 109.49718 * 174.58738 * 10 9 8 37 37 H 1.08993 * 109.46413 * 178.61835 * 11 10 9 38 38 H 1.08997 * 109.46257 * 58.65001 * 11 10 9 39 39 H 0.96998 * 120.00564 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.56385 * 113.80301 * 22 8 6 41 41 H 1.09002 * 109.61373 * 353.38090 * 22 8 6 42 42 H 1.08999 * 109.46894 * 303.99119 * 23 4 3 43 43 H 1.08997 * 109.47290 * 64.99857 * 24 23 4 44 44 H 1.09008 * 109.46844 * 184.99493 * 24 23 4 45 45 H 1.09004 * 109.47313 * 304.98715 * 24 23 4 46 46 H 1.08999 * 109.47106 * 63.21705 * 25 23 4 47 47 H 1.09001 * 109.46429 * 183.21105 * 25 23 4 48 48 H 1.08992 * 109.47441 * 303.21052 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5652 1.4442 -0.1227 5 1 3.9930 0.8140 0.6571 6 6 4.0799 2.8522 0.0308 7 8 3.4563 3.7804 -0.4391 8 7 5.2330 3.0802 0.6901 9 6 5.9492 1.9790 1.3483 10 6 7.3971 1.9639 0.8483 11 6 8.0236 3.3424 1.0699 12 6 7.2475 4.3917 0.2707 13 1 7.2647 4.1293 -0.7871 14 6 7.8846 5.7437 0.4639 15 1 7.3436 6.5280 0.9724 16 6 9.1606 5.9776 -0.0034 17 7 9.8550 4.9972 -0.5382 18 14 9.9029 7.6871 0.1233 19 1 10.7200 7.7816 1.3596 20 1 10.7637 7.9418 -1.0597 21 1 8.8151 8.6969 0.1705 22 6 5.7977 4.4347 0.7635 23 6 3.9671 0.9010 -1.4954 24 6 3.4504 1.8406 -2.5868 25 6 5.4919 0.8094 -1.5811 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.7498 1.9305 0.9304 32 1 1.6072 1.9809 -0.8431 33 1 5.4680 1.0321 1.1034 34 1 5.9370 2.1289 2.4279 35 1 7.4123 1.7240 -0.2150 36 1 7.9644 1.2136 1.3991 37 1 9.0615 3.3273 0.7374 38 1 7.9857 3.5923 2.1301 39 1 10.7525 5.1617 -0.8673 40 1 5.7727 4.7851 1.7953 41 1 5.2171 5.1078 0.1327 42 1 3.5351 -0.0900 -1.6346 43 1 3.9493 2.8059 -2.5013 44 1 3.6589 1.4094 -3.5660 45 1 2.3750 1.9757 -2.4708 46 1 5.8552 0.0965 -0.8409 47 1 5.7803 0.4767 -2.5782 48 1 5.9264 1.7896 -1.3853 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597906842.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:23 Heat of formation + Delta-G solvation = -85.609549 kcal Electronic energy + Delta-G solvation = -24110.062312 eV Core-core repulsion = 20969.941799 eV Total energy + Delta-G solvation = -3140.120513 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.62299 -38.75376 -37.47472 -35.35984 -34.58495 -33.04210 -32.02904 -30.32362 -28.16042 -27.09949 -26.48177 -24.84514 -23.31011 -22.86967 -21.91734 -20.41515 -19.30760 -18.49110 -17.98824 -16.85339 -16.65430 -16.42210 -16.15952 -15.26075 -15.13781 -14.84423 -14.70988 -14.51629 -14.41489 -14.22199 -13.81470 -13.65104 -13.55515 -13.06902 -12.91398 -12.88426 -12.79456 -12.67928 -12.63490 -12.36449 -12.06896 -11.97110 -11.80874 -11.78181 -11.59440 -11.56129 -11.37832 -11.21656 -11.05721 -10.87955 -10.45799 -10.31472 -9.41330 -8.12720 -6.26293 1.38164 1.40148 1.50600 1.74970 2.18298 2.43110 3.14790 3.54023 3.73095 3.89083 3.95999 4.18228 4.25040 4.26922 4.31163 4.39406 4.41245 4.52523 4.60369 4.65701 4.66055 4.74197 4.83572 4.84336 4.88186 4.90490 4.97916 4.99397 5.07584 5.09871 5.13217 5.15891 5.23629 5.27482 5.34193 5.42445 5.44837 5.50343 5.50911 5.59355 5.62022 5.63595 5.93933 6.11680 6.34255 6.65657 6.83452 7.33274 7.41389 8.91797 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028706 B = 0.004337 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.167377 B = 6454.794799 C = 6594.671676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.101 4.101 4 C -0.099 4.099 5 H 0.116 0.884 6 C 0.511 3.489 7 O -0.592 6.592 8 N -0.607 5.607 9 C 0.106 3.894 10 C -0.132 4.132 11 C -0.102 4.102 12 C 0.046 3.954 13 H -0.012 1.012 14 C -0.540 4.540 15 H 0.049 0.951 16 C 0.018 3.982 17 N -0.911 5.911 18 Si 0.952 3.048 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.273 1.273 22 C 0.130 3.870 23 C -0.074 4.074 24 C -0.148 4.148 25 C -0.160 4.160 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.115 0.885 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.034 0.966 39 H 0.261 0.739 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.116 0.884 43 H 0.020 0.980 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.079 0.921 47 H 0.061 0.939 48 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.288 -15.637 2.331 20.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.139 4.139 4 C -0.120 4.120 5 H 0.134 0.866 6 C 0.301 3.699 7 O -0.473 6.473 8 N -0.338 5.338 9 C -0.015 4.015 10 C -0.169 4.169 11 C -0.140 4.140 12 C 0.027 3.973 13 H 0.007 0.993 14 C -0.578 4.578 15 H 0.068 0.932 16 C -0.181 4.181 17 N -0.550 5.550 18 Si 0.778 3.222 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.198 1.198 22 C 0.007 3.993 23 C -0.093 4.093 24 C -0.205 4.205 25 C -0.217 4.217 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.132 0.868 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.134 0.866 43 H 0.039 0.961 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.098 0.902 47 H 0.080 0.920 48 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -12.435 -15.185 2.022 19.730 hybrid contribution 0.910 1.767 -0.186 1.996 sum -11.525 -13.417 1.836 17.783 Atomic orbital electron populations 1.21771 0.95575 1.02163 1.01521 1.21567 0.96087 0.94561 1.03310 1.21502 0.91925 0.98676 1.01828 1.21592 0.98045 0.91520 1.00816 0.86629 1.21352 0.79815 0.92437 0.76303 1.90613 1.58704 1.47387 1.50642 1.48387 1.22911 1.09545 1.52942 1.22071 0.92370 0.89931 0.97177 1.22025 0.95575 0.97843 1.01499 1.21391 1.00927 0.93840 0.97844 1.18828 0.90038 0.94682 0.93795 0.99348 1.21446 1.00381 0.98182 1.37817 0.93235 1.25664 0.97381 1.00301 0.94769 1.70018 1.11220 1.32551 1.41218 0.85632 0.78269 0.80496 0.77801 1.19735 1.20820 1.19758 1.21499 0.95178 0.82940 0.99651 1.21088 0.96035 1.00364 0.91804 1.21909 1.01267 0.98496 0.98872 1.22141 0.95199 1.01536 1.02853 0.93187 0.93265 0.91404 0.90478 0.90613 0.93015 0.92234 0.86751 0.90524 0.92508 0.89419 0.92525 0.94690 0.92952 0.92707 0.93380 0.86635 0.96059 0.91677 0.92010 0.90181 0.91987 0.94961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 71.99 0.71 -1.43 16 2 C -0.12 -1.73 5.82 30.60 0.18 -1.55 16 3 C -0.10 -2.23 4.15 30.60 0.13 -2.10 16 4 C -0.10 -2.38 1.58 -11.54 -0.02 -2.40 16 5 H 0.12 2.15 5.61 -2.38 -0.01 2.14 16 6 C 0.51 18.13 5.04 87.66 0.44 18.58 16 7 O -0.59 -26.11 14.42 -3.05 -0.04 -26.15 16 8 N -0.61 -22.15 2.51 -818.89 -2.05 -24.21 16 9 C 0.11 2.98 5.34 86.36 0.46 3.44 16 10 C -0.13 -4.35 5.92 30.67 0.18 -4.17 16 11 C -0.10 -4.58 5.01 30.62 0.15 -4.42 16 12 C 0.05 2.34 2.19 -11.46 -0.03 2.32 16 13 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 14 C -0.54 -30.48 8.50 25.60 0.22 -30.26 16 15 H 0.05 2.78 7.75 -2.91 -0.02 2.76 16 16 C 0.02 1.02 5.36 84.66 0.45 1.47 16 17 N -0.91 -52.61 11.53 21.45 0.25 -52.36 16 18 Si 0.95 44.30 29.54 68.60 2.03 46.33 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 20 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 21 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 22 C 0.13 5.91 5.65 86.36 0.49 6.39 16 23 C -0.07 -1.65 2.57 -10.80 -0.03 -1.68 16 24 C -0.15 -4.03 8.32 71.98 0.60 -3.43 16 25 C -0.16 -3.92 7.16 71.98 0.52 -3.41 16 26 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 27 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 0.98 6.32 -2.39 -0.02 0.96 16 30 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.53 6.07 -2.39 -0.01 1.51 16 33 H 0.11 2.33 4.28 -2.39 -0.01 2.32 16 34 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.06 1.99 5.79 -2.38 -0.01 1.98 16 36 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 37 H 0.06 2.92 6.29 -2.39 -0.02 2.91 16 38 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 40 H 0.05 2.41 8.14 -2.39 -0.02 2.40 16 41 H 0.05 2.43 7.03 -2.39 -0.02 2.41 16 42 H 0.12 1.80 6.34 -2.39 -0.02 1.79 16 43 H 0.02 0.75 6.64 -2.39 -0.02 0.73 16 44 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 45 H 0.06 1.61 6.19 -2.38 -0.01 1.60 16 46 H 0.08 1.55 7.54 -2.39 -0.02 1.53 16 47 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.03 1.06 5.06 -2.39 -0.01 1.04 16 Total: -1.00 -68.20 348.75 5.56 -62.65 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.92 Total: 16.39 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: 4.46 Total: -22.65 kcal Atomic # 7 Polarization: -74.77 SS G_CDS: -1.80 Total: -76.57 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.04 Total: -26.15 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -68.20 5.56 -62.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906842.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.961 kcal (2) G-P(sol) polarization free energy of solvation -68.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds