Wall clock time and date at job start Tue Mar 31 2020 06:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46901 * 2 1 4 4 H 1.09001 * 109.47094 * 174.72700 * 3 2 1 5 5 C 1.52995 * 109.47440 * 294.73081 * 3 2 1 6 6 C 1.50696 * 109.47085 * 293.72096 * 5 3 2 7 7 O 1.21271 * 120.00087 * 353.47982 * 6 5 3 8 8 N 1.34786 * 119.99854 * 173.47565 * 6 5 3 9 9 C 1.46919 * 120.62912 * 0.02562 * 8 6 5 10 10 C 1.53200 * 108.89355 * 126.34303 * 9 8 6 11 11 C 1.53345 * 109.14921 * 54.57125 * 10 9 8 12 12 C 1.53037 * 109.61309 * 298.71808 * 11 10 9 13 13 H 1.09007 * 109.49590 * 301.42033 * 12 11 10 14 14 C 1.50697 * 109.50229 * 181.32548 * 12 11 10 15 15 H 1.08002 * 120.00183 * 240.16230 * 14 12 11 16 16 C 1.37874 * 120.00127 * 60.15740 * 14 12 11 17 17 N 1.31516 * 119.99722 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 120.00048 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47128 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47000 * 120.00001 * 18 16 14 21 21 H 1.48500 * 109.46986 * 239.99740 * 18 16 14 22 22 C 1.46920 * 120.62626 * 180.02562 * 8 6 5 23 23 C 1.53003 * 109.47218 * 54.73379 * 3 2 1 24 24 C 1.52995 * 109.47159 * 59.99530 * 23 3 2 25 25 C 1.52999 * 109.47218 * 179.97438 * 23 3 2 26 26 H 1.09006 * 109.46649 * 57.12589 * 1 2 3 27 27 H 1.08993 * 109.46874 * 177.12440 * 1 2 3 28 28 H 1.08997 * 109.47395 * 297.13084 * 1 2 3 29 29 H 1.08996 * 109.47119 * 240.00319 * 2 1 3 30 30 H 1.09002 * 109.46974 * 119.99803 * 2 1 3 31 31 H 1.09001 * 109.47149 * 173.71941 * 5 3 2 32 32 H 1.08999 * 109.46952 * 53.72611 * 5 3 2 33 33 H 1.09000 * 109.58520 * 246.19428 * 9 8 6 34 34 H 1.08999 * 109.59004 * 6.48419 * 9 8 6 35 35 H 1.09000 * 109.49915 * 174.65871 * 10 9 8 36 36 H 1.09004 * 109.49049 * 294.75426 * 10 9 8 37 37 H 1.09001 * 109.41747 * 178.67558 * 11 10 9 38 38 H 1.09009 * 109.42089 * 58.75746 * 11 10 9 39 39 H 0.97006 * 119.99834 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.59058 * 353.37049 * 22 8 6 41 41 H 1.08999 * 109.58693 * 113.66025 * 22 8 6 42 42 H 1.09005 * 109.47020 * 299.99755 * 23 3 2 43 43 H 1.09001 * 109.47288 * 60.00596 * 24 23 3 44 44 H 1.09000 * 109.47422 * 180.02562 * 24 23 3 45 45 H 1.09003 * 109.47577 * 299.99948 * 24 23 3 46 46 H 1.08997 * 109.47598 * 59.99834 * 25 23 3 47 47 H 1.09000 * 109.46963 * 180.02562 * 25 23 3 48 48 H 1.09001 * 109.47094 * 299.99321 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1259 1.4440 0.0944 5 6 1.6410 2.1245 -1.3101 6 6 2.3692 1.4732 -2.4575 7 8 3.2188 0.6358 -2.2394 8 7 2.0761 1.8214 -3.7262 9 6 1.0497 2.8346 -4.0063 10 6 1.6554 3.9198 -4.9022 11 6 2.2533 3.2639 -6.1527 12 6 3.3653 2.2956 -5.7431 13 1 4.1335 2.8366 -5.1905 14 6 3.9730 1.6769 -6.9755 15 1 3.9430 0.6061 -7.1131 16 6 4.5671 2.4779 -7.9276 17 7 4.6039 3.7818 -7.7599 18 14 5.3197 1.7111 -9.4557 19 1 5.1487 0.2369 -9.4052 20 1 4.6424 2.2474 -10.6635 21 1 6.7668 2.0394 -9.5128 22 6 2.7771 1.1948 -4.8552 23 6 1.4247 2.2010 1.1778 24 6 1.8237 1.5189 2.4879 25 6 1.9352 3.6433 1.1782 26 1 -0.3633 0.5579 -0.8632 27 1 -0.3633 -1.0263 -0.0516 28 1 -0.3634 0.4686 0.9145 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.9053 3.1810 -1.2649 32 1 0.5658 2.0251 -1.4587 33 1 0.2062 2.3690 -4.5159 34 1 0.7110 3.2800 -3.0709 35 1 0.8783 4.6263 -5.1939 36 1 2.4396 4.4453 -4.3573 37 1 2.6647 4.0346 -6.8045 38 1 1.4734 2.7177 -6.6835 39 1 5.0222 4.3453 -8.4295 40 1 3.5799 0.5601 -4.4801 41 1 2.0751 0.5932 -5.4327 42 1 0.3388 2.1995 1.0834 43 1 2.9096 1.5204 2.5824 44 1 1.3850 2.0590 3.3270 45 1 1.4603 0.4913 2.4880 46 1 1.6513 4.1295 0.2448 47 1 1.4972 4.1835 2.0175 48 1 3.0210 3.6444 1.2728 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597914705.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:52 Heat of formation + Delta-G solvation = -89.166884 kcal Electronic energy + Delta-G solvation = -23528.543644 eV Core-core repulsion = 20388.268873 eV Total energy + Delta-G solvation = -3140.274770 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.31583 -39.16341 -37.92190 -35.36651 -33.30497 -33.05567 -32.17335 -30.76704 -27.76678 -27.19760 -26.53554 -25.13937 -23.36972 -23.11074 -21.49518 -19.94541 -19.38019 -18.52955 -17.85119 -17.04159 -16.57803 -16.54950 -15.89380 -15.46843 -15.12235 -15.00523 -14.89412 -14.53304 -14.35872 -13.82411 -13.77435 -13.57244 -13.51478 -13.20436 -13.01568 -12.89789 -12.72482 -12.68620 -12.58880 -12.37399 -12.13080 -11.93995 -11.85612 -11.65795 -11.60955 -11.33973 -11.22190 -11.11363 -11.08631 -10.82678 -10.54232 -10.41220 -9.43668 -8.12138 -6.27392 1.38350 1.40545 1.51998 1.75194 2.18659 2.43250 3.14203 3.60713 3.81451 3.93450 4.06287 4.15095 4.24388 4.27912 4.40177 4.43803 4.54034 4.55583 4.57605 4.65920 4.67120 4.71155 4.83135 4.86279 4.87851 4.88825 4.98328 5.05426 5.11018 5.12525 5.15750 5.20501 5.25023 5.29820 5.36513 5.39947 5.48365 5.51700 5.58418 5.60372 5.63424 5.71307 5.92539 6.13277 6.33898 6.64527 6.82482 7.32227 7.40881 8.91662 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029736 B = 0.003793 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.407241 B = 7380.379553 C = 7633.240662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.063 4.063 4 H 0.048 0.952 5 C -0.131 4.131 6 C 0.501 3.499 7 O -0.592 6.592 8 N -0.611 5.611 9 C 0.109 3.891 10 C -0.128 4.128 11 C -0.105 4.105 12 C 0.041 3.959 13 H -0.016 1.016 14 C -0.538 4.538 15 H 0.050 0.950 16 C 0.017 3.983 17 N -0.913 5.913 18 Si 0.955 3.045 19 H -0.270 1.270 20 H -0.275 1.275 21 H -0.282 1.282 22 C 0.130 3.870 23 C -0.086 4.086 24 C -0.148 4.148 25 C -0.154 4.154 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.038 0.962 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.091 0.909 36 H 0.044 0.956 37 H 0.061 0.939 38 H 0.036 0.964 39 H 0.262 0.738 40 H 0.048 0.952 41 H 0.057 0.943 42 H 0.091 0.909 43 H 0.043 0.957 44 H 0.066 0.934 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.067 0.933 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.921 0.516 17.000 21.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.082 4.082 4 H 0.066 0.934 5 C -0.170 4.170 6 C 0.291 3.709 7 O -0.474 6.474 8 N -0.343 5.343 9 C -0.012 4.012 10 C -0.166 4.166 11 C -0.144 4.144 12 C 0.022 3.978 13 H 0.002 0.998 14 C -0.577 4.577 15 H 0.069 0.931 16 C -0.182 4.182 17 N -0.552 5.552 18 Si 0.781 3.219 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.208 1.208 22 C 0.008 3.992 23 C -0.104 4.104 24 C -0.205 4.205 25 C -0.211 4.211 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.127 0.873 32 H 0.137 0.863 33 H 0.098 0.902 34 H 0.133 0.867 35 H 0.109 0.891 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.109 0.891 43 H 0.062 0.938 44 H 0.085 0.915 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.086 0.914 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.433 0.241 17.026 21.084 hybrid contribution 1.245 -0.410 -1.376 1.900 sum -11.189 -0.170 15.651 19.239 Atomic orbital electron populations 1.21874 0.94505 1.01723 1.02595 1.21556 0.96980 0.96184 1.01224 1.20926 0.99497 0.94913 0.92905 0.93359 1.21959 1.02138 1.01415 0.91469 1.21535 0.82776 0.82056 0.84510 1.90614 1.35838 1.36000 1.84940 1.48419 1.39363 1.40881 1.05647 1.21971 0.89507 0.88429 1.01316 1.21972 1.00203 0.97774 0.96645 1.21469 0.96480 0.99414 0.96992 1.18861 0.93321 0.92695 0.92904 0.99759 1.21476 1.37374 0.93342 1.05506 0.93140 1.25692 0.96182 0.95295 1.01062 1.70019 1.44812 1.04327 1.36030 0.85548 0.78024 0.78801 0.79539 1.19393 1.20013 1.20836 1.21475 0.95302 0.95895 0.86565 1.21167 1.01111 0.94585 0.93574 1.21870 1.00973 1.00878 0.96753 1.21959 1.00729 0.95936 1.02457 0.92546 0.93096 0.90626 0.94298 0.91802 0.87257 0.86335 0.90171 0.86725 0.89096 0.93754 0.92048 0.94485 0.92925 0.93293 0.92444 0.89105 0.93820 0.91499 0.92251 0.91970 0.91373 0.93928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.15 71.98 0.66 -1.95 16 2 C -0.12 -2.86 5.01 30.60 0.15 -2.70 16 3 C -0.06 -1.44 1.39 -10.79 -0.02 -1.46 16 4 H 0.05 1.40 7.81 -2.39 -0.02 1.38 16 5 C -0.13 -3.04 3.25 29.85 0.10 -2.94 16 6 C 0.50 17.65 7.25 87.65 0.64 18.28 16 7 O -0.59 -26.05 13.76 -3.00 -0.04 -26.09 16 8 N -0.61 -22.24 2.97 -818.98 -2.44 -24.67 16 9 C 0.11 3.02 6.29 86.37 0.54 3.56 16 10 C -0.13 -4.28 6.11 30.78 0.19 -4.09 16 11 C -0.11 -4.77 4.97 30.72 0.15 -4.62 16 12 C 0.04 2.13 2.25 -11.47 -0.03 2.11 16 13 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 14 C -0.54 -30.46 8.56 25.60 0.22 -30.24 16 15 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 16 C 0.02 0.94 5.30 84.65 0.45 1.39 16 17 N -0.91 -52.75 11.32 21.45 0.24 -52.51 16 18 Si 0.96 44.18 29.54 68.60 2.03 46.21 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 22 C 0.13 5.90 5.65 86.35 0.49 6.39 16 23 C -0.09 -1.37 2.01 -10.79 -0.02 -1.40 16 24 C -0.15 -2.23 8.84 71.98 0.64 -1.60 16 25 C -0.15 -2.36 8.85 71.98 0.64 -1.73 16 26 H 0.06 0.95 6.32 -2.38 -0.02 0.93 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 1.01 6.52 -2.39 -0.02 1.00 16 29 H 0.04 1.21 6.23 -2.39 -0.01 1.19 16 30 H 0.06 1.41 6.72 -2.39 -0.02 1.39 16 31 H 0.11 2.24 5.95 -2.39 -0.01 2.22 16 32 H 0.12 2.08 5.71 -2.39 -0.01 2.07 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.11 2.19 5.95 -2.39 -0.01 2.18 16 35 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.06 3.20 6.05 -2.39 -0.01 3.18 16 38 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.26 14.31 8.31 -92.70 -0.77 13.54 16 40 H 0.05 2.46 7.01 -2.39 -0.02 2.44 16 41 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.09 1.17 6.41 -2.38 -0.02 1.16 16 43 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.06 0.88 6.55 -2.39 -0.02 0.87 16 46 H 0.06 0.90 6.30 -2.39 -0.02 0.89 16 47 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -68.50 352.92 5.50 -63.00 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.91 Total: 15.06 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: 4.79 Total: -20.99 kcal Atomic # 7 Polarization: -74.99 SS G_CDS: -2.19 Total: -77.18 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.04 Total: -26.09 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -68.50 5.50 -63.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597914705.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.169 kcal (2) G-P(sol) polarization free energy of solvation -68.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds