Wall clock time and date at job start Tue Mar 31 2020 06:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.47328 * 2 1 4 4 H 1.09002 * 109.46809 * 304.86871 * 3 2 1 5 5 C 1.52997 * 109.47137 * 184.86355 * 3 2 1 6 6 C 1.50697 * 109.47114 * 65.00288 * 5 3 2 7 7 O 1.21281 * 120.00222 * 359.97438 * 6 5 3 8 8 N 1.34775 * 119.99705 * 179.97438 * 6 5 3 9 9 C 1.46928 * 120.63356 * 359.97438 * 8 6 5 10 10 C 1.53189 * 108.89600 * 126.34485 * 9 8 6 11 11 C 1.53354 * 109.14755 * 54.57324 * 10 9 8 12 12 C 1.53037 * 109.61316 * 298.71748 * 11 10 9 13 13 H 1.09003 * 109.49057 * 301.42209 * 12 11 10 14 14 C 1.50697 * 109.49907 * 181.32671 * 12 11 10 15 15 H 1.07997 * 119.99759 * 240.16206 * 14 12 11 16 16 C 1.37878 * 120.00163 * 60.15567 * 14 12 11 17 17 N 1.31511 * 120.00059 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99953 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47178 * 60.00295 * 18 16 14 20 20 H 1.48501 * 109.47036 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47065 * 300.00336 * 18 16 14 22 22 C 1.46932 * 120.63071 * 180.02562 * 8 6 5 23 23 C 1.53002 * 109.46944 * 64.86430 * 3 2 1 24 24 C 1.52999 * 109.47121 * 65.19133 * 23 3 2 25 25 C 1.52993 * 109.47211 * 185.19342 * 23 3 2 26 26 H 1.08998 * 109.46890 * 293.13342 * 1 2 3 27 27 H 1.08997 * 109.47000 * 53.13111 * 1 2 3 28 28 H 1.08992 * 109.46903 * 173.13238 * 1 2 3 29 29 H 1.08998 * 109.47404 * 240.00316 * 2 1 3 30 30 H 1.09000 * 109.47335 * 119.99951 * 2 1 3 31 31 H 1.09000 * 109.46942 * 304.99718 * 5 3 2 32 32 H 1.09005 * 109.46888 * 185.00216 * 5 3 2 33 33 H 1.09001 * 109.58698 * 246.20392 * 9 8 6 34 34 H 1.08996 * 109.58306 * 6.48068 * 9 8 6 35 35 H 1.08995 * 109.50294 * 174.65751 * 10 9 8 36 36 H 1.09004 * 109.49689 * 294.75937 * 10 9 8 37 37 H 1.09004 * 109.41828 * 178.67594 * 11 10 9 38 38 H 1.09000 * 109.41964 * 58.75639 * 11 10 9 39 39 H 0.97006 * 120.00285 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.58349 * 353.37383 * 22 8 6 41 41 H 1.09004 * 109.58479 * 113.64950 * 22 8 6 42 42 H 1.09008 * 109.46640 * 305.19078 * 23 3 2 43 43 H 1.09000 * 109.47074 * 60.00423 * 24 23 3 44 44 H 1.09000 * 109.46674 * 180.02562 * 24 23 3 45 45 H 1.09000 * 109.47167 * 299.99774 * 24 23 3 46 46 H 1.09002 * 109.47271 * 299.73193 * 25 23 3 47 47 H 1.09008 * 109.47070 * 59.73005 * 25 23 3 48 48 H 1.08999 * 109.47444 * 179.72656 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6073 1.9809 -0.8432 5 6 3.5652 1.4442 -0.1223 6 6 3.9622 0.8810 -1.4625 7 8 3.1095 0.5140 -2.2428 8 7 5.2651 0.7853 -1.7939 9 6 6.3097 1.2263 -0.8595 10 6 7.3046 0.0803 -0.6507 11 6 7.8316 -0.3829 -2.0143 12 6 6.6693 -0.8978 -2.8663 13 1 6.1745 -1.7193 -2.3482 14 6 7.1942 -1.3825 -4.1931 15 1 6.8492 -0.9267 -5.1094 16 6 8.1152 -2.4076 -4.2373 17 7 8.5351 -2.9628 -3.1215 18 14 8.7665 -3.0079 -5.8819 19 1 9.4422 -1.8881 -6.5852 20 1 9.7366 -4.1096 -5.6579 21 1 7.6379 -3.5035 -6.7102 22 6 5.6679 0.2389 -3.0970 23 6 1.6324 2.1276 1.3059 24 6 2.3431 1.4514 2.4800 25 6 2.0283 3.6045 1.2523 26 1 -0.3633 0.4037 0.9450 27 1 -0.3633 0.6166 -0.8221 28 1 -0.3633 -1.0202 -0.1229 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.9939 0.8317 0.6708 32 1 3.9357 2.4655 -0.0331 33 1 6.8293 2.0904 -1.2736 34 1 5.8565 1.4952 0.0946 35 1 8.1344 0.4266 -0.0347 36 1 6.8036 -0.7503 -0.1535 37 1 8.5578 -1.1828 -1.8694 38 1 8.3103 0.4548 -2.5214 39 1 9.1828 -3.6843 -3.1526 40 1 4.7915 -0.1462 -3.6184 41 1 6.1329 1.0233 -3.6942 42 1 0.5535 2.0452 1.4380 43 1 3.4219 1.5338 2.3480 44 1 2.0522 1.9392 3.4104 45 1 2.0609 0.3992 2.5183 46 1 3.1077 3.6869 1.1250 47 1 1.5257 4.0852 0.4129 48 1 1.7335 4.0936 2.1807 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597914708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:56 Heat of formation + Delta-G solvation = -74.416672 kcal Electronic energy + Delta-G solvation = -23558.946884 eV Core-core repulsion = 20419.311731 eV Total energy + Delta-G solvation = -3139.635153 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.95419 -37.95110 -36.46130 -33.49661 -32.32715 -31.35775 -30.67576 -29.45265 -27.31230 -25.48109 -24.95341 -23.67829 -22.20583 -21.67069 -20.06908 -18.65106 -18.13712 -16.99373 -16.21437 -15.49160 -15.13682 -14.90278 -14.67386 -14.23572 -13.90817 -13.55507 -13.43690 -13.23805 -12.96282 -12.85364 -12.68530 -12.39911 -12.14574 -12.01825 -11.95499 -11.68328 -11.36629 -11.29298 -10.99359 -10.96134 -10.84111 -10.74840 -10.42701 -10.29064 -10.24715 -10.12785 -9.94530 -9.73790 -9.42422 -9.13739 -8.80790 -8.37843 -7.84320 -6.01574 -4.08692 3.13373 3.31614 3.35938 3.38843 3.61730 4.42860 4.67188 4.75355 4.77904 5.09793 5.16069 5.23696 5.27501 5.33918 5.41022 5.50770 5.54104 5.57618 5.65426 5.66418 5.74720 5.79824 5.80325 5.82675 5.98562 6.00306 6.07146 6.12526 6.20061 6.25892 6.32921 6.35108 6.42480 6.49061 6.53525 6.65191 6.69848 6.82629 7.01168 7.18483 7.34667 7.69211 7.93142 8.06924 8.08631 8.38496 8.73594 8.95009 9.56141 11.03904 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026955 B = 0.003965 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.508526 B = 7059.259392 C = 7484.572978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C -0.064 4.064 4 H 0.076 0.924 5 C -0.139 4.139 6 C 0.507 3.493 7 O -0.549 6.549 8 N -0.605 5.605 9 C 0.110 3.890 10 C -0.135 4.135 11 C -0.112 4.112 12 C 0.041 3.959 13 H 0.029 0.971 14 C -0.515 4.515 15 H 0.056 0.944 16 C 0.064 3.936 17 N -0.889 5.889 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.117 3.883 23 C -0.094 4.094 24 C -0.152 4.152 25 C -0.150 4.150 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.095 0.905 38 H 0.035 0.965 39 H 0.261 0.739 40 H 0.078 0.922 41 H 0.052 0.948 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.050 0.950 45 H 0.058 0.942 46 H 0.056 0.944 47 H 0.053 0.947 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.347 10.587 11.536 18.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C -0.083 4.083 4 H 0.094 0.906 5 C -0.178 4.178 6 C 0.295 3.705 7 O -0.428 6.428 8 N -0.337 5.337 9 C -0.014 4.014 10 C -0.174 4.174 11 C -0.150 4.150 12 C 0.022 3.978 13 H 0.047 0.953 14 C -0.553 4.553 15 H 0.074 0.926 16 C -0.138 4.138 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.004 4.004 23 C -0.113 4.113 24 C -0.209 4.209 25 C -0.207 4.207 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.113 0.887 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.072 0.928 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.662 10.251 11.180 17.984 hybrid contribution 0.631 -0.341 -0.775 1.056 sum -9.031 9.910 10.405 16.972 Atomic orbital electron populations 1.21746 0.96406 1.01208 1.01015 1.21745 0.95542 0.96282 1.03045 1.20959 0.93216 0.96948 0.97134 0.90581 1.21866 0.97861 1.02257 0.95862 1.20605 0.82262 0.78772 0.88835 1.90620 1.49364 1.50132 1.52672 1.48334 1.05065 1.61780 1.18568 1.21714 0.89810 0.97531 0.92303 1.22057 0.97498 0.97208 1.00593 1.21681 1.01114 1.00416 0.91772 1.18956 0.91187 0.91823 0.95831 0.95329 1.21049 1.24385 1.17781 0.92126 0.92566 1.24930 0.96299 0.96153 0.96376 1.69863 1.31853 1.25066 1.26022 0.86645 0.78731 0.78359 0.84202 1.20261 1.21310 1.20223 1.21974 0.99570 0.96896 0.81999 1.21196 1.00379 0.94753 0.94926 1.21959 1.00805 1.00772 0.97391 1.21909 1.01624 0.95857 1.01337 0.93308 0.92883 0.93209 0.89708 0.92560 0.89074 0.89348 0.92103 0.91214 0.92505 0.92421 0.88717 0.94641 0.92938 0.90380 0.92931 0.90892 0.92388 0.93139 0.92321 0.92510 0.92771 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.50 37.16 0.35 -1.31 16 2 C -0.13 -1.69 5.05 -26.73 -0.14 -1.83 16 3 C -0.06 -0.77 1.28 -90.62 -0.12 -0.89 16 4 H 0.08 1.04 7.96 -51.93 -0.41 0.62 16 5 C -0.14 -1.77 2.72 -27.89 -0.08 -1.85 16 6 C 0.51 8.96 7.38 -10.99 -0.08 8.88 16 7 O -0.55 -11.47 13.40 5.56 0.07 -11.39 16 8 N -0.61 -11.15 2.97 -172.74 -0.51 -11.66 16 9 C 0.11 1.68 6.33 -3.71 -0.02 1.66 16 10 C -0.14 -2.38 6.11 -26.45 -0.16 -2.55 16 11 C -0.11 -2.50 4.97 -26.53 -0.13 -2.63 16 12 C 0.04 1.01 2.25 -91.63 -0.21 0.81 16 13 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 14 C -0.51 -14.01 8.56 -34.44 -0.29 -14.30 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 17 N -0.89 -24.99 11.32 55.43 0.63 -24.37 16 18 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 22 C 0.12 2.55 5.66 -3.69 -0.02 2.52 16 23 C -0.09 -0.89 2.56 -90.62 -0.23 -1.13 16 24 C -0.15 -1.35 8.47 37.16 0.31 -1.03 16 25 C -0.15 -1.29 8.95 37.15 0.33 -0.96 16 26 H 0.05 0.47 6.79 -51.93 -0.35 0.12 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 1.41 5.88 -51.93 -0.31 1.11 16 30 H 0.06 0.69 6.36 -51.93 -0.33 0.36 16 31 H 0.09 1.09 6.20 -51.93 -0.32 0.77 16 32 H 0.09 0.98 6.15 -51.93 -0.32 0.66 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.85 5.93 -51.93 -0.31 0.54 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.09 2.41 6.05 -51.93 -0.31 2.09 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.08 1.83 7.01 -51.93 -0.36 1.47 16 41 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.07 0.68 6.48 -51.92 -0.34 0.34 16 43 H 0.06 0.51 6.46 -51.93 -0.34 0.17 16 44 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.54 6.47 -51.93 -0.34 0.20 16 46 H 0.06 0.48 6.48 -51.93 -0.34 0.14 16 47 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 48 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 353.47 15.07 5.33 5.33 Total: -1.00 -29.17 353.47 -8.64 -37.81 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -8.56 Total: 1.09 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -0.57 Total: -12.95 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.11 Total: -36.03 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.07 Total: -11.39 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.17 -8.64 -37.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597914708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.603 kcal (2) G-P(sol) polarization free energy of solvation -29.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds