Wall clock time and date at job start Tue Mar 31 2020 06:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 N 1.46507 * 109.47144 * 295.00275 * 3 2 1 14 14 C 1.34773 * 120.00337 * 85.00358 * 13 3 2 15 15 O 1.21285 * 119.99653 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00176 * 180.02562 * 14 13 3 17 17 C 1.52997 * 109.46764 * 299.99275 * 16 14 13 18 18 C 1.52994 * 109.47265 * 59.99256 * 16 14 13 19 19 C 1.53004 * 109.47066 * 179.97438 * 16 14 13 20 20 C 1.52999 * 109.46740 * 299.99741 * 19 16 14 21 21 C 1.53005 * 109.46867 * 180.02562 * 20 19 16 22 22 C 1.52993 * 109.47212 * 59.99406 * 21 20 19 23 23 C 1.52999 * 109.47690 * 300.00090 * 22 21 20 24 24 C 1.53003 * 109.46727 * 179.97438 * 19 16 14 25 25 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 26 26 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 27 27 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 29 29 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 30 30 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 31 31 H 0.96999 * 119.99253 * 265.00221 * 13 3 2 32 32 H 1.09011 * 109.47049 * 60.00192 * 17 16 14 33 33 H 1.08997 * 109.47527 * 179.97438 * 17 16 14 34 34 H 1.09003 * 109.47574 * 300.00361 * 17 16 14 35 35 H 1.09003 * 109.47121 * 60.00406 * 18 16 14 36 36 H 1.09006 * 109.47364 * 180.02562 * 18 16 14 37 37 H 1.08998 * 109.47597 * 300.00178 * 18 16 14 38 38 H 1.08993 * 109.46954 * 59.99617 * 19 16 14 39 39 H 1.09003 * 109.47422 * 299.99807 * 20 19 16 40 40 H 1.08996 * 109.47466 * 59.99991 * 20 19 16 41 41 H 1.09003 * 109.46497 * 299.99828 * 21 20 19 42 42 H 1.09000 * 109.47245 * 180.02562 * 21 20 19 43 43 H 1.09011 * 109.46946 * 180.02562 * 22 21 20 44 44 H 1.09003 * 109.47045 * 60.00757 * 22 21 20 45 45 H 1.09004 * 109.46940 * 300.00227 * 23 22 21 46 46 H 1.08996 * 109.47167 * 179.97438 * 23 22 21 47 47 H 1.08995 * 109.47071 * 299.99340 * 24 19 16 48 48 H 1.08990 * 109.47101 * 60.00065 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.4486 2.1066 2.0771 11 1 6.4366 -0.3171 2.1526 12 1 6.6108 0.8288 0.0225 13 7 1.6523 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3670 15 8 -0.3396 2.6320 -0.4343 16 6 0.0361 3.3377 -2.6548 17 6 1.0065 4.4821 -2.9538 18 6 0.0797 2.3206 -3.7969 19 6 -1.3831 3.8936 -2.5214 20 6 -2.3531 2.7487 -2.2226 21 6 -3.7725 3.3045 -2.0898 22 6 -4.1771 3.9878 -3.3975 23 6 -3.2071 5.1326 -3.6963 24 6 -1.7878 4.5777 -3.8288 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8899 30 1 3.8292 -0.0558 2.9526 31 1 2.2719 2.1232 -1.9978 32 1 2.0176 4.0858 -3.0490 33 1 0.7184 4.9689 -3.8855 34 1 0.9756 5.2068 -2.1402 35 1 -0.6116 1.5052 -3.5838 36 1 -0.2084 2.8076 -4.7285 37 1 1.0906 1.9242 -3.8921 38 1 -1.4145 4.6181 -1.7077 39 1 -2.3218 2.0241 -3.0363 40 1 -2.0646 2.2617 -1.2912 41 1 -3.8041 4.0293 -1.2762 42 1 -4.4635 2.4890 -1.8765 43 1 -5.1881 4.3841 -3.3027 44 1 -4.1454 3.2630 -4.2110 45 1 -3.2388 5.8574 -2.8827 46 1 -3.4951 5.6190 -4.6282 47 1 -1.0967 5.3933 -4.0411 48 1 -1.7563 3.8534 -4.6426 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762722359.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:13 Heat of formation + Delta-G solvation = -80.108658 kcal Electronic energy + Delta-G solvation = -24196.154442 eV Core-core repulsion = 21056.272466 eV Total energy + Delta-G solvation = -3139.881976 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.25673 -37.91600 -35.13843 -34.58076 -32.28049 -30.85597 -30.61264 -29.02807 -27.25061 -26.83869 -24.02155 -23.02801 -22.31279 -21.42362 -19.81791 -19.31129 -18.50008 -16.78104 -15.70188 -15.52930 -15.09516 -14.70354 -14.53565 -14.08208 -14.02320 -13.87447 -13.37638 -13.04211 -12.74323 -12.66331 -12.18086 -12.11577 -11.85529 -11.71615 -11.61146 -11.43736 -11.31655 -11.20659 -10.99555 -10.93380 -10.80264 -10.71207 -10.68444 -10.28645 -10.18905 -10.04551 -9.92709 -9.75144 -9.57630 -9.01131 -8.59672 -8.42172 -7.71943 -6.10230 -4.19220 3.25097 3.31966 3.33557 3.52657 4.14362 4.39907 4.70401 4.82145 4.92843 5.13929 5.16529 5.20997 5.23043 5.41879 5.54445 5.57795 5.61745 5.70454 5.74110 5.74901 5.78085 5.87810 5.95435 6.04780 6.09896 6.16063 6.20433 6.24205 6.30510 6.33411 6.42151 6.46802 6.48759 6.52228 6.68839 6.73935 6.87094 7.08747 7.24038 7.41783 7.55181 7.65707 7.78487 7.94777 8.22003 8.76185 8.82920 9.25012 9.49031 10.95056 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029948 B = 0.004457 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.735301 B = 6280.733423 C = 6790.135606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.126 4.126 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.707 5.707 14 C 0.512 3.488 15 O -0.545 6.545 16 C -0.082 4.082 17 C -0.140 4.140 18 C -0.141 4.141 19 C -0.055 4.055 20 C -0.128 4.128 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.117 4.117 24 C -0.118 4.118 25 H 0.049 0.951 26 H 0.040 0.960 27 H 0.020 0.980 28 H 0.029 0.971 29 H 0.097 0.903 30 H 0.264 0.736 31 H 0.386 0.614 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.097 0.903 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.055 0.945 47 H 0.061 0.939 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.496 6.286 -12.855 17.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.165 4.165 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.354 5.354 14 C 0.297 3.703 15 O -0.424 6.424 16 C -0.085 4.085 17 C -0.198 4.198 18 C -0.199 4.199 19 C -0.074 4.074 20 C -0.165 4.165 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.155 4.155 24 C -0.155 4.155 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.039 0.961 28 H 0.048 0.952 29 H 0.115 0.885 30 H 0.074 0.926 31 H 0.218 0.782 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.115 0.885 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.005 6.140 -11.972 16.767 hybrid contribution 1.370 -0.057 -0.238 1.392 sum -8.635 6.083 -12.210 16.145 Atomic orbital electron populations 1.21847 0.98370 0.97897 1.01290 1.21916 0.92619 0.99927 1.02073 1.18737 0.94012 0.89108 0.81256 0.93432 1.21247 0.90882 1.38940 1.06071 0.92232 1.24881 0.98467 0.94854 0.95449 1.69901 1.35039 1.37830 1.09202 0.86487 0.85072 0.77618 0.78153 1.20608 1.21105 1.19890 1.46489 1.14799 1.55925 1.18224 1.20207 0.82513 0.78925 0.88693 1.90582 1.51013 1.60175 1.40631 1.20828 0.96712 0.96328 0.94621 1.21881 0.98561 0.97550 1.01768 1.21929 1.02297 0.98536 0.97098 1.20845 0.91955 0.97490 0.97079 1.21907 0.93413 0.97443 1.03716 1.21503 0.97197 0.99700 0.97004 1.21548 0.98177 0.97711 0.98186 1.21505 0.95289 0.97772 1.00933 1.21728 0.96026 0.99863 0.97926 0.93214 0.94056 0.96069 0.95203 0.88487 0.92636 0.78203 0.92140 0.91887 0.92288 0.91978 0.91909 0.92345 0.90947 0.92884 0.88516 0.92236 0.92589 0.92748 0.92385 0.92203 0.92587 0.92000 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.51 37.16 0.32 -2.72 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.21 16 3 C 0.27 6.75 2.24 -69.08 -0.15 6.59 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -14.02 8.73 -34.44 -0.30 -14.32 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.73 11.31 55.43 0.63 -24.10 16 9 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 13 N -0.71 -14.39 4.81 -54.93 -0.26 -14.65 16 14 C 0.51 9.73 4.76 -10.99 -0.05 9.68 16 15 O -0.54 -12.07 10.79 5.55 0.06 -12.01 16 16 C -0.08 -1.16 0.43 -155.66 -0.07 -1.23 16 17 C -0.14 -1.77 8.02 37.16 0.30 -1.47 16 18 C -0.14 -1.76 7.66 37.15 0.28 -1.47 16 19 C -0.05 -0.74 1.19 -90.62 -0.11 -0.85 16 20 C -0.13 -1.82 4.53 -26.73 -0.12 -1.94 16 21 C -0.12 -1.44 5.92 -26.73 -0.16 -1.59 16 22 C -0.12 -1.23 5.92 -26.73 -0.16 -1.38 16 23 C -0.12 -1.18 5.92 -26.75 -0.16 -1.34 16 24 C -0.12 -1.27 4.50 -26.75 -0.12 -1.39 16 25 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 26 H 0.04 0.88 5.64 -51.93 -0.29 0.58 16 27 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.10 2.62 5.96 -51.93 -0.31 2.31 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.39 7.02 7.37 -40.82 -0.30 6.72 16 32 H 0.06 0.76 7.56 -51.92 -0.39 0.36 16 33 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.82 6.43 -51.93 -0.33 0.49 16 36 H 0.06 0.65 6.43 -51.93 -0.33 0.31 16 37 H 0.06 0.71 7.56 -51.93 -0.39 0.32 16 38 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 39 H 0.05 0.72 6.43 -51.93 -0.33 0.38 16 40 H 0.10 1.72 5.51 -51.93 -0.29 1.43 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.51 8.14 -51.92 -0.42 0.08 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.62 6.43 -51.93 -0.33 0.29 16 48 H 0.06 0.65 6.43 -51.93 -0.33 0.31 16 LS Contribution 347.88 15.07 5.24 5.24 Total: -1.00 -28.32 347.88 -8.64 -36.97 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -8.55 Total: 7.91 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -0.74 Total: -14.95 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.36 Total: -38.76 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.06 Total: -12.01 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.32 -8.64 -36.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762722359.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.143 kcal (2) G-P(sol) polarization free energy of solvation -28.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds