Wall clock time and date at job start Tue Mar 31 2020 06:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 N 1.46507 * 109.47144 * 295.00275 * 3 2 1 14 14 C 1.34773 * 120.00337 * 85.00358 * 13 3 2 15 15 O 1.21285 * 119.99653 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00176 * 180.02562 * 14 13 3 17 17 C 1.52997 * 109.46764 * 299.99275 * 16 14 13 18 18 C 1.52994 * 109.47265 * 59.99256 * 16 14 13 19 19 C 1.53004 * 109.47066 * 179.97438 * 16 14 13 20 20 C 1.52999 * 109.46740 * 299.99741 * 19 16 14 21 21 C 1.53005 * 109.46867 * 180.02562 * 20 19 16 22 22 C 1.52993 * 109.47212 * 59.99406 * 21 20 19 23 23 C 1.52999 * 109.47690 * 300.00090 * 22 21 20 24 24 C 1.53003 * 109.46727 * 179.97438 * 19 16 14 25 25 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 26 26 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 27 27 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 29 29 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 30 30 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 31 31 H 0.96999 * 119.99253 * 265.00221 * 13 3 2 32 32 H 1.09011 * 109.47049 * 60.00192 * 17 16 14 33 33 H 1.08997 * 109.47527 * 179.97438 * 17 16 14 34 34 H 1.09003 * 109.47574 * 300.00361 * 17 16 14 35 35 H 1.09003 * 109.47121 * 60.00406 * 18 16 14 36 36 H 1.09006 * 109.47364 * 180.02562 * 18 16 14 37 37 H 1.08998 * 109.47597 * 300.00178 * 18 16 14 38 38 H 1.08993 * 109.46954 * 59.99617 * 19 16 14 39 39 H 1.09003 * 109.47422 * 299.99807 * 20 19 16 40 40 H 1.08996 * 109.47466 * 59.99991 * 20 19 16 41 41 H 1.09003 * 109.46497 * 299.99828 * 21 20 19 42 42 H 1.09000 * 109.47245 * 180.02562 * 21 20 19 43 43 H 1.09011 * 109.46946 * 180.02562 * 22 21 20 44 44 H 1.09003 * 109.47045 * 60.00757 * 22 21 20 45 45 H 1.09004 * 109.46940 * 300.00227 * 23 22 21 46 46 H 1.08996 * 109.47167 * 179.97438 * 23 22 21 47 47 H 1.08995 * 109.47071 * 299.99340 * 24 19 16 48 48 H 1.08990 * 109.47101 * 60.00065 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.4486 2.1066 2.0771 11 1 6.4366 -0.3171 2.1526 12 1 6.6108 0.8288 0.0225 13 7 1.6523 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3670 15 8 -0.3396 2.6320 -0.4343 16 6 0.0361 3.3377 -2.6548 17 6 1.0065 4.4821 -2.9538 18 6 0.0797 2.3206 -3.7969 19 6 -1.3831 3.8936 -2.5214 20 6 -2.3531 2.7487 -2.2226 21 6 -3.7725 3.3045 -2.0898 22 6 -4.1771 3.9878 -3.3975 23 6 -3.2071 5.1326 -3.6963 24 6 -1.7878 4.5777 -3.8288 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8899 30 1 3.8292 -0.0558 2.9526 31 1 2.2719 2.1232 -1.9978 32 1 2.0176 4.0858 -3.0490 33 1 0.7184 4.9689 -3.8855 34 1 0.9756 5.2068 -2.1402 35 1 -0.6116 1.5052 -3.5838 36 1 -0.2084 2.8076 -4.7285 37 1 1.0906 1.9242 -3.8921 38 1 -1.4145 4.6181 -1.7077 39 1 -2.3218 2.0241 -3.0363 40 1 -2.0646 2.2617 -1.2912 41 1 -3.8041 4.0293 -1.2762 42 1 -4.4635 2.4890 -1.8765 43 1 -5.1881 4.3841 -3.3027 44 1 -4.1454 3.2630 -4.2110 45 1 -3.2388 5.8574 -2.8827 46 1 -3.4951 5.6190 -4.6282 47 1 -1.0967 5.3933 -4.0411 48 1 -1.7563 3.8534 -4.6426 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762722359.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:12 Heat of formation + Delta-G solvation = -95.403178 kcal Electronic energy + Delta-G solvation = -24196.817662 eV Core-core repulsion = 21056.272466 eV Total energy + Delta-G solvation = -3140.545196 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.58628 -39.22310 -36.86418 -35.85623 -34.19126 -32.65722 -31.56833 -30.13979 -28.79604 -28.21322 -25.41387 -24.71500 -23.29649 -22.79938 -21.40717 -20.72280 -19.84560 -18.46820 -17.29048 -17.13795 -16.44847 -16.20220 -16.05006 -15.36333 -15.04829 -14.92113 -14.78524 -14.56955 -14.19922 -13.98608 -13.53305 -13.29494 -13.20968 -13.15309 -12.90006 -12.87588 -12.78932 -12.68906 -12.60673 -12.35909 -12.15006 -12.07609 -11.90887 -11.70628 -11.61052 -11.54583 -11.15560 -11.06933 -10.96637 -10.72332 -10.54738 -10.02560 -9.50997 -8.15462 -6.32632 1.43997 1.44106 1.54830 2.00659 2.37419 2.73987 3.13885 3.67249 3.84957 3.87117 4.10979 4.17872 4.19898 4.43152 4.48888 4.49641 4.57907 4.58015 4.65373 4.71666 4.76815 4.78470 4.82870 4.88248 4.91958 4.98562 5.01672 5.08441 5.19430 5.21320 5.25472 5.28099 5.32282 5.34434 5.38822 5.45568 5.49109 5.53419 5.57773 5.63778 5.71707 5.78958 5.82245 5.98295 6.19961 6.76873 7.11090 7.35492 7.71965 8.89766 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029948 B = 0.004457 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.735301 B = 6280.733423 C = 6790.135606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.119 4.119 3 C 0.280 3.720 4 H -0.006 1.006 5 C -0.547 4.547 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.968 3.032 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.260 1.260 13 N -0.706 5.706 14 C 0.504 3.496 15 O -0.581 6.581 16 C -0.073 4.073 17 C -0.138 4.138 18 C -0.138 4.138 19 C -0.052 4.052 20 C -0.125 4.125 21 C -0.117 4.117 22 C -0.114 4.114 23 C -0.117 4.117 24 C -0.112 4.112 25 H 0.022 0.978 26 H 0.048 0.952 27 H 0.042 0.958 28 H 0.039 0.961 29 H 0.068 0.932 30 H 0.264 0.736 31 H 0.398 0.602 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.042 0.958 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.044 0.956 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.044 0.956 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.051 0.949 46 H 0.079 0.921 47 H 0.075 0.925 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.184 7.042 -16.207 19.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.158 4.158 3 C 0.177 3.823 4 H 0.012 0.988 5 C -0.585 4.585 6 H 0.088 0.912 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.184 1.184 13 N -0.354 5.354 14 C 0.292 3.708 15 O -0.462 6.462 16 C -0.076 4.076 17 C -0.195 4.195 18 C -0.195 4.195 19 C -0.071 4.071 20 C -0.163 4.163 21 C -0.154 4.154 22 C -0.151 4.151 23 C -0.155 4.155 24 C -0.149 4.149 25 H 0.042 0.958 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.233 0.767 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.114 0.886 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.070 0.930 46 H 0.097 0.903 47 H 0.094 0.906 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.696 6.912 -15.362 19.437 hybrid contribution 1.207 -0.283 0.874 1.516 sum -8.490 6.629 -14.489 18.054 Atomic orbital electron populations 1.21667 0.96971 0.98874 1.00320 1.21757 0.93744 0.99318 1.00986 1.18282 0.93392 0.89024 0.81648 0.98839 1.21597 0.91623 1.38834 1.06476 0.91232 1.25764 1.03212 0.94413 0.95068 1.70060 1.37007 1.38597 1.09735 0.85404 0.79294 0.77383 0.78612 1.20492 1.21002 1.18394 1.46272 1.15834 1.56228 1.17097 1.21207 0.81350 0.78063 0.90203 1.90586 1.51863 1.61151 1.42579 1.20837 0.97476 0.97049 0.92247 1.21906 0.98234 0.96572 1.02826 1.21947 1.02452 0.97820 0.97327 1.20812 0.91377 0.96690 0.98176 1.21803 0.94804 0.97847 1.01807 1.21493 0.96127 0.99590 0.98211 1.21523 0.98948 0.97903 0.96765 1.21524 0.94674 0.97481 1.01813 1.21707 0.96801 1.00321 0.96041 0.95842 0.93345 0.93944 0.94250 0.91338 0.92704 0.76699 0.91905 0.88478 0.93837 0.92972 0.88641 0.91987 0.93705 0.91894 0.92780 0.93686 0.92495 0.91505 0.91381 0.93021 0.90250 0.90603 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.51 71.98 0.61 -4.94 16 2 C -0.12 -5.96 5.45 30.60 0.17 -5.79 16 3 C 0.28 14.52 2.24 44.24 0.10 14.62 16 4 H -0.01 -0.39 7.58 -2.39 -0.02 -0.41 16 5 C -0.55 -29.21 8.73 25.60 0.22 -28.99 16 6 H 0.07 3.48 7.74 -2.92 -0.02 3.46 16 7 C 0.02 0.83 5.29 84.66 0.45 1.28 16 8 N -0.92 -53.03 11.31 21.45 0.24 -52.79 16 9 Si 0.97 42.39 29.54 68.60 2.03 44.41 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 13 N -0.71 -29.19 4.81 -446.09 -2.14 -31.34 16 14 C 0.50 19.63 4.76 87.66 0.42 20.05 16 15 O -0.58 -27.26 10.79 -3.05 -0.03 -27.29 16 16 C -0.07 -1.99 0.43 -52.93 -0.02 -2.01 16 17 C -0.14 -3.19 8.02 71.98 0.58 -2.61 16 18 C -0.14 -3.05 7.66 71.98 0.55 -2.50 16 19 C -0.05 -1.35 1.19 -10.79 -0.01 -1.36 16 20 C -0.13 -3.57 4.53 30.60 0.14 -3.43 16 21 C -0.12 -2.84 5.92 30.59 0.18 -2.66 16 22 C -0.11 -2.06 5.92 30.59 0.18 -1.88 16 23 C -0.12 -1.99 5.92 30.58 0.18 -1.81 16 24 C -0.11 -2.02 4.50 30.58 0.14 -1.88 16 25 H 0.02 1.15 7.85 -2.39 -0.02 1.14 16 26 H 0.05 2.12 5.64 -2.39 -0.01 2.11 16 27 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.07 3.85 5.96 -2.39 -0.01 3.83 16 30 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 31 H 0.40 14.28 7.37 -92.71 -0.68 13.60 16 32 H 0.06 1.42 7.56 -2.38 -0.02 1.41 16 33 H 0.10 1.60 6.43 -2.39 -0.02 1.58 16 34 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.05 1.26 6.43 -2.39 -0.02 1.25 16 36 H 0.09 1.52 6.43 -2.38 -0.02 1.50 16 37 H 0.06 1.34 7.56 -2.39 -0.02 1.32 16 38 H 0.04 1.41 8.10 -2.39 -0.02 1.39 16 39 H 0.06 1.63 6.43 -2.39 -0.02 1.62 16 40 H 0.05 2.02 5.51 -2.39 -0.01 2.01 16 41 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 44 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 46 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.08 1.19 6.43 -2.39 -0.02 1.18 16 48 H 0.08 1.22 6.43 -2.39 -0.02 1.21 16 Total: -1.00 -64.97 347.88 4.22 -60.75 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: 0.24 Total: 30.16 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: 3.88 Total: -23.91 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -1.90 Total: -84.13 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.03 Total: -27.29 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Total: -64.97 4.22 -60.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762722359.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.652 kcal (2) G-P(sol) polarization free energy of solvation -64.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds