Wall clock time and date at job start Tue Mar 31 2020 05:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47292 * 2 1 4 4 C 1.52997 * 109.47375 * 120.00001 * 2 1 3 5 5 N 1.46494 * 109.47638 * 175.56337 * 4 2 1 6 6 C 1.46499 * 120.00464 * 276.35133 * 5 4 2 7 7 C 1.50705 * 109.47071 * 270.00101 * 6 5 4 8 8 H 1.08000 * 119.99884 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00115 * 179.97438 * 7 6 5 10 10 N 1.31519 * 120.00297 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 119.99963 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.46857 * 90.00286 * 11 9 7 13 13 H 1.48495 * 109.47022 * 210.00140 * 11 9 7 14 14 H 1.48501 * 109.47180 * 330.00543 * 11 9 7 15 15 C 1.34783 * 120.00017 * 96.34820 * 5 4 2 16 16 O 1.21281 * 120.00324 * 175.58893 * 15 5 4 17 17 C 1.50699 * 119.99400 * 355.86567 * 15 5 4 18 18 H 1.08996 * 115.54860 * 281.19650 * 17 15 5 19 19 C 1.53001 * 117.50092 * 66.87627 * 17 15 5 20 20 C 1.52999 * 60.00187 * 107.48456 * 19 17 15 21 21 C 1.52999 * 117.49867 * 107.48815 * 20 19 17 22 22 C 1.52995 * 117.49818 * 252.51159 * 20 19 17 23 23 C 1.53008 * 109.47131 * 241.93834 * 22 20 19 24 24 C 1.53001 * 109.47419 * 1.93605 * 22 20 19 25 25 H 1.08992 * 109.47309 * 300.00191 * 1 2 3 26 26 H 1.09000 * 109.46892 * 60.00262 * 1 2 3 27 27 H 1.08996 * 109.47357 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47049 * 239.99770 * 2 1 3 29 29 H 1.09003 * 109.47307 * 184.31848 * 3 2 1 30 30 H 1.08999 * 109.47047 * 304.31810 * 3 2 1 31 31 H 1.08996 * 109.46943 * 64.31691 * 3 2 1 32 32 H 1.09003 * 109.47288 * 55.56110 * 4 2 1 33 33 H 1.09004 * 109.47150 * 295.57232 * 4 2 1 34 34 H 1.09002 * 109.46634 * 29.99173 * 6 5 4 35 35 H 1.08995 * 109.47341 * 149.99534 * 6 5 4 36 36 H 0.96996 * 120.00257 * 179.97438 * 10 9 7 37 37 H 1.08994 * 117.49646 * 214.97765 * 19 17 15 38 38 H 1.09001 * 117.50010 * 359.97438 * 19 17 15 39 39 H 1.09001 * 109.47329 * 351.38373 * 21 20 19 40 40 H 1.09007 * 109.46920 * 111.37603 * 21 20 19 41 41 H 1.09000 * 109.47563 * 231.37311 * 21 20 19 42 42 H 1.09002 * 109.47679 * 121.94298 * 22 20 19 43 43 H 1.09002 * 109.46644 * 299.99892 * 23 22 20 44 44 H 1.08995 * 109.47084 * 59.99478 * 23 22 20 45 45 H 1.09007 * 109.47101 * 180.02562 * 23 22 20 46 46 H 1.09000 * 109.46877 * 64.30083 * 24 22 20 47 47 H 1.08998 * 109.47423 * 184.30275 * 24 22 20 48 48 H 1.08995 * 109.47089 * 304.30332 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5011 -0.8145 1.1970 6 6 4.1396 -1.8990 0.4472 7 6 4.3484 -3.0830 1.3560 8 1 4.0369 -3.0324 2.3889 9 6 4.9369 -4.2306 0.8689 10 7 5.1196 -5.2637 1.6621 11 14 5.4750 -4.3184 -0.9178 12 1 6.8780 -3.8461 -1.0360 13 1 5.3834 -5.7220 -1.3939 14 1 4.5914 -3.4567 -1.7437 15 6 4.2579 0.0976 1.8388 16 8 5.4644 -0.0242 1.8630 17 6 3.6045 1.2655 2.5318 18 1 3.2936 2.0836 1.8821 19 6 2.7359 0.9654 3.7550 20 6 4.1045 1.6259 3.9322 21 6 4.1299 3.1073 4.3137 22 6 5.2295 0.7729 4.5218 23 6 5.6977 1.3883 5.8421 24 6 4.7151 -0.6457 4.7745 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1273 1.4434 -0.0774 30 1 1.6149 1.9781 -0.8488 31 1 1.7412 1.9334 0.9261 32 1 1.6133 -1.7234 1.2899 33 1 1.7430 -0.1636 2.1375 34 1 3.5006 -2.1894 -0.3867 35 1 5.1026 -1.5593 0.0660 36 1 5.5333 -6.0712 1.3193 37 1 1.8536 1.5862 3.9102 38 1 2.6366 -0.0769 4.0583 39 1 3.1208 3.5152 4.2544 40 1 4.5057 3.2140 5.3314 41 1 4.7814 3.6482 3.6273 42 1 6.0640 0.7375 3.8214 43 1 6.0642 2.3989 5.6620 44 1 4.8634 1.4238 6.5425 45 1 6.4996 0.7808 6.2619 46 1 4.4530 -1.1117 3.8246 47 1 5.4923 -1.2321 5.2646 48 1 3.8336 -0.6040 5.4142 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772966752.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:34 Heat of formation + Delta-G solvation = -25.461486 kcal Electronic energy + Delta-G solvation = -24411.413921 eV Core-core repulsion = 21273.901624 eV Total energy + Delta-G solvation = -3137.512297 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.28897 -37.64585 -36.22589 -33.64393 -32.95453 -32.15208 -29.37531 -28.17712 -27.19043 -26.07651 -25.65618 -23.68429 -22.78498 -21.50276 -20.17818 -18.70831 -17.61123 -16.88151 -16.53436 -15.48087 -15.30418 -14.69001 -14.33969 -14.15873 -14.06176 -13.79601 -13.20946 -12.98837 -12.79039 -12.62797 -12.52366 -12.29722 -12.21236 -12.02041 -11.71739 -11.56857 -11.48867 -11.31902 -11.05482 -10.98957 -10.82855 -10.71137 -10.52720 -10.46838 -10.41587 -10.34742 -10.09633 -9.82174 -9.47354 -9.40221 -8.67508 -8.55649 -7.60816 -6.05578 -4.03329 3.30404 3.36310 3.38267 3.39506 3.69346 4.04610 4.42044 4.79574 4.89026 4.99564 5.06966 5.09137 5.14402 5.24496 5.28148 5.45739 5.53389 5.61980 5.69526 5.71970 5.74543 5.84143 5.85686 5.86850 5.89086 5.93339 5.97518 6.05670 6.12491 6.18436 6.20388 6.24945 6.26687 6.29577 6.38599 6.44474 6.52629 6.62403 6.77276 6.85821 6.91443 6.99306 7.44922 7.65601 8.36257 8.51044 8.97612 9.10414 9.55567 11.07774 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013637 B = 0.007176 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.801360 B = 3901.133896 C = 5280.672142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.147 4.147 4 C 0.112 3.888 5 N -0.588 5.588 6 C 0.217 3.783 7 C -0.523 4.523 8 H 0.075 0.925 9 C 0.072 3.928 10 N -0.898 5.898 11 Si 0.874 3.126 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.267 1.267 15 C 0.541 3.459 16 O -0.534 6.534 17 C -0.180 4.180 18 H 0.127 0.873 19 C -0.169 4.169 20 C -0.091 4.091 21 C -0.119 4.119 22 C -0.065 4.065 23 C -0.143 4.143 24 C -0.149 4.149 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.028 0.972 35 H 0.033 0.967 36 H 0.263 0.737 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.053 0.947 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.094 0.906 43 H 0.054 0.946 44 H 0.050 0.950 45 H 0.051 0.949 46 H 0.071 0.929 47 H 0.052 0.948 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.198 15.467 2.469 17.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.136 4.136 3 C -0.204 4.204 4 C -0.012 4.012 5 N -0.318 5.318 6 C 0.096 3.904 7 C -0.561 4.561 8 H 0.093 0.907 9 C -0.130 4.130 10 N -0.537 5.537 11 Si 0.701 3.299 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.191 1.191 15 C 0.327 3.673 16 O -0.411 6.411 17 C -0.201 4.201 18 H 0.144 0.856 19 C -0.206 4.206 20 C -0.091 4.091 21 C -0.176 4.176 22 C -0.084 4.084 23 C -0.200 4.200 24 C -0.206 4.206 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.045 0.955 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.125 0.875 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.112 0.888 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.071 0.929 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.472 15.183 2.473 17.101 hybrid contribution 0.167 -0.310 -1.059 1.116 sum -7.304 14.872 1.415 16.630 Atomic orbital electron populations 1.21752 0.95030 1.01832 1.01376 1.21551 0.95459 0.96571 0.99983 1.22002 1.01263 0.96079 1.01090 1.21663 0.81161 1.01216 0.97205 1.47847 1.05545 1.27425 1.50992 1.19615 0.93418 0.85430 0.91939 1.21315 1.40104 0.96228 0.98459 0.90686 1.24840 0.95158 0.95528 0.97445 1.69896 1.43991 1.04279 1.35510 0.86892 0.79910 0.77326 0.85805 1.20017 1.21157 1.19141 1.19362 0.86841 0.82265 0.78787 1.90642 1.14340 1.76107 1.59980 1.22637 1.05361 1.00396 0.91696 0.85558 1.23436 0.94046 1.02805 1.00272 1.21591 0.95399 0.95814 0.96301 1.21491 1.01447 0.92653 1.02044 1.20697 0.97238 0.93799 0.96629 1.21915 1.00575 1.00287 0.97221 1.21976 1.00251 0.95792 1.02568 0.92767 0.92940 0.92472 0.90935 0.92624 0.93244 0.92519 0.90358 0.90293 0.95460 0.94902 0.92675 0.88699 0.87484 0.92796 0.91166 0.92292 0.88771 0.92739 0.93086 0.92973 0.91059 0.92939 0.93461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.19 37.16 0.34 -1.18 16 2 C -0.12 -1.56 3.12 -90.62 -0.28 -1.84 16 3 C -0.15 -1.81 7.37 37.16 0.27 -1.53 16 4 C 0.11 1.79 4.89 -4.05 -0.02 1.77 16 5 N -0.59 -11.90 2.23 -175.06 -0.39 -12.29 16 6 C 0.22 5.28 4.22 -5.19 -0.02 5.26 16 7 C -0.52 -14.88 9.94 -34.44 -0.34 -15.22 16 8 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 9 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 10 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 11 Si 0.87 21.76 27.47 -169.99 -4.67 17.09 16 12 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 15 C 0.54 10.85 3.98 -10.98 -0.04 10.81 16 16 O -0.53 -12.94 13.99 5.56 0.08 -12.86 16 17 C -0.18 -2.73 3.71 -91.77 -0.34 -3.07 16 18 H 0.13 1.69 5.47 -51.93 -0.28 1.40 16 19 C -0.17 -2.22 6.80 -26.73 -0.18 -2.40 16 20 C -0.09 -1.26 2.52 -154.51 -0.39 -1.65 16 21 C -0.12 -1.31 9.33 37.16 0.35 -0.96 16 22 C -0.07 -1.05 2.41 -90.62 -0.22 -1.27 16 23 C -0.14 -1.83 7.95 37.16 0.30 -1.53 16 24 C -0.15 -2.66 7.60 37.16 0.28 -2.38 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 1.09 8.05 -51.93 -0.42 0.67 16 29 H 0.05 0.80 6.51 -51.93 -0.34 0.46 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.62 6.59 -51.93 -0.34 0.28 16 32 H 0.08 1.34 8.12 -51.93 -0.42 0.92 16 33 H 0.08 1.11 4.82 -51.93 -0.25 0.86 16 34 H 0.03 0.64 7.04 -51.93 -0.37 0.28 16 35 H 0.03 0.86 6.92 -51.93 -0.36 0.50 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.09 1.00 8.05 -51.93 -0.42 0.58 16 38 H 0.11 1.59 5.64 -51.93 -0.29 1.29 16 39 H 0.05 0.50 7.90 -51.93 -0.41 0.09 16 40 H 0.07 0.70 5.61 -51.93 -0.29 0.41 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 1.81 6.46 -51.93 -0.34 1.48 16 43 H 0.05 0.62 6.65 -51.93 -0.35 0.27 16 44 H 0.05 0.59 8.08 -51.93 -0.42 0.17 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.07 1.54 5.46 -51.93 -0.28 1.26 16 47 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.05 0.74 7.02 -51.93 -0.36 0.38 16 LS Contribution 354.62 15.07 5.34 5.34 Total: -1.00 -32.11 354.62 -7.75 -39.86 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -8.49 Total: 2.97 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -0.40 Total: -13.20 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.38 Total: -39.21 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.08 Total: -12.86 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.11 -7.75 -39.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772966752.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.394 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds