Wall clock time and date at job start Tue Mar 31 2020 05:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47177 * 2 1 4 4 C 1.53002 * 109.47345 * 189.42620 * 3 2 1 5 5 C 1.52999 * 109.47233 * 69.42767 * 3 2 1 6 6 N 1.46499 * 109.47321 * 309.42813 * 3 2 1 7 7 C 1.46502 * 119.99890 * 127.62680 * 6 3 2 8 8 C 1.50702 * 109.47180 * 269.91744 * 7 6 3 9 9 H 1.08001 * 119.99464 * 3.68124 * 8 7 6 10 10 C 1.37869 * 120.00005 * 183.67569 * 8 7 6 11 11 N 1.31516 * 120.00211 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99959 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47601 * 89.99985 * 12 10 8 14 14 H 1.48507 * 109.46845 * 210.00202 * 12 10 8 15 15 H 1.48501 * 109.46750 * 329.99704 * 12 10 8 16 16 C 1.34777 * 119.99928 * 307.62805 * 6 3 2 17 17 O 1.21282 * 120.00119 * 188.18171 * 16 6 3 18 18 C 1.50694 * 120.00216 * 8.17941 * 16 6 3 19 19 C 1.52999 * 109.47511 * 192.90516 * 18 16 6 20 20 H 1.08996 * 109.46611 * 305.00056 * 19 18 16 21 21 C 1.52998 * 109.46764 * 65.00132 * 19 18 16 22 22 C 1.52998 * 109.47227 * 185.00337 * 19 18 16 23 23 C 1.52989 * 117.50149 * 128.62360 * 22 19 18 24 24 C 1.53000 * 117.50273 * 59.99593 * 22 19 18 25 25 H 1.08999 * 109.47414 * 189.17088 * 1 2 3 26 26 H 1.09007 * 109.46901 * 309.16704 * 1 2 3 27 27 H 1.08996 * 109.47328 * 69.16525 * 1 2 3 28 28 H 1.09000 * 109.46840 * 240.00511 * 2 1 3 29 29 H 1.09002 * 109.47071 * 120.00312 * 2 1 3 30 30 H 1.09001 * 109.47193 * 161.37533 * 4 3 2 31 31 H 1.08996 * 109.46905 * 281.37800 * 4 3 2 32 32 H 1.08998 * 109.46541 * 41.37318 * 4 3 2 33 33 H 1.09005 * 109.47424 * 299.54432 * 5 3 2 34 34 H 1.09007 * 109.47118 * 59.53718 * 5 3 2 35 35 H 1.08999 * 109.47464 * 179.53861 * 5 3 2 36 36 H 1.08996 * 109.47277 * 29.92396 * 7 6 3 37 37 H 1.09004 * 109.47142 * 149.91962 * 7 6 3 38 38 H 0.97005 * 119.99931 * 180.02562 * 11 10 8 39 39 H 1.09005 * 109.46803 * 72.90344 * 18 16 6 40 40 H 1.09005 * 109.46973 * 312.90842 * 18 16 6 41 41 H 1.08996 * 109.47101 * 299.99910 * 21 19 18 42 42 H 1.09000 * 109.46802 * 180.02562 * 21 19 18 43 43 H 1.09002 * 109.47478 * 60.00087 * 21 19 18 44 44 H 1.09001 * 115.54858 * 274.32939 * 22 19 18 45 45 H 1.09003 * 117.49892 * 359.97438 * 23 22 19 46 46 H 1.09000 * 117.50161 * 145.02008 * 23 22 19 47 47 H 1.08991 * 117.50129 * 214.98097 * 24 22 19 48 48 H 1.08999 * 117.49667 * 0.02562 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5517 1.4490 -0.2362 5 6 1.7321 2.0923 1.3505 6 7 1.3758 2.1953 -1.0669 7 6 0.7099 3.4643 -0.7626 8 6 -0.7289 3.2022 -0.3991 9 1 -1.0939 2.1876 -0.3372 10 6 -1.5792 4.2574 -0.1456 11 7 -1.1347 5.4929 -0.2214 12 14 -3.3625 3.9325 0.3057 13 1 -3.4845 3.8034 1.7800 14 1 -4.2055 5.0613 -0.1638 15 1 -3.8152 2.6744 -0.3405 16 6 1.3772 1.7205 -2.3282 17 8 0.9602 2.4085 -3.2357 18 6 1.8970 0.3346 -2.6110 19 6 2.0903 0.1600 -4.1187 20 1 1.1567 0.3875 -4.6333 21 6 3.1859 1.1104 -4.6057 22 6 2.4982 -1.2841 -4.4168 23 6 1.6992 -2.0385 -5.4813 24 6 1.5278 -2.3922 -4.0026 25 1 -0.3634 -1.0145 0.1638 26 1 -0.3633 0.6491 0.7968 27 1 -0.3634 0.3655 -0.9604 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8641 2.4408 -0.5630 31 1 4.0653 1.1931 0.6904 32 1 3.8024 0.7176 -1.0045 33 1 0.6546 2.0950 1.5153 34 1 2.2196 1.5273 2.1451 35 1 2.1027 3.1173 1.3535 36 1 1.2139 3.9476 0.0743 37 1 0.7512 4.1149 -1.6363 38 1 -1.7329 6.2354 -0.0427 39 1 1.1808 -0.4030 -2.2487 40 1 2.8515 0.1939 -2.1036 41 1 2.8953 2.1392 -4.3933 42 1 3.3233 0.9864 -5.6799 43 1 4.1194 0.8830 -4.0910 44 1 3.5649 -1.4960 -4.3435 45 1 0.8826 -1.5061 -5.9690 46 1 2.2402 -2.7468 -6.1088 47 1 1.9561 -3.3331 -3.6573 48 1 0.5986 -2.0923 -3.5181 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787944016.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:41 Heat of formation + Delta-G solvation = -11.871159 kcal Electronic energy + Delta-G solvation = -24524.372607 eV Core-core repulsion = 21387.449631 eV Total energy + Delta-G solvation = -3136.922976 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.11174 -37.88605 -36.59272 -33.56079 -32.60025 -31.51631 -30.21545 -28.94381 -26.55244 -26.21217 -23.49727 -23.03820 -22.47987 -22.19397 -20.62305 -19.43474 -17.79576 -16.54922 -15.80131 -15.63535 -15.23804 -14.79557 -14.51230 -14.36176 -14.28445 -13.62216 -13.15019 -12.91600 -12.73430 -12.50883 -12.26239 -12.05137 -11.88138 -11.71330 -11.56036 -11.42919 -11.32116 -11.06774 -11.01851 -10.97107 -10.85209 -10.61211 -10.41305 -10.32992 -10.29178 -10.15115 -10.02330 -9.97933 -9.50988 -9.41163 -8.71326 -8.36674 -7.48480 -5.98591 -4.01968 3.30734 3.38321 3.40986 3.56750 3.77578 4.05156 4.47769 4.68949 4.94071 4.95294 5.05495 5.12615 5.30735 5.33155 5.37685 5.40294 5.47363 5.61904 5.65524 5.69611 5.75658 5.80255 5.90577 5.92277 6.02555 6.03778 6.09030 6.13197 6.18451 6.20780 6.24606 6.28758 6.36592 6.38502 6.54393 6.61486 6.64440 6.66057 6.82077 7.06394 7.22605 7.58021 7.70757 8.00416 8.32519 8.59374 8.99616 9.25095 9.62824 11.09288 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017465 B = 0.005757 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.802577 B = 4862.087256 C = 5184.213830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.154 4.154 3 C 0.168 3.832 4 C -0.166 4.166 5 C -0.148 4.148 6 N -0.588 5.588 7 C 0.241 3.759 8 C -0.522 4.522 9 H 0.066 0.934 10 C 0.061 3.939 11 N -0.894 5.894 12 Si 0.890 3.110 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.275 1.275 16 C 0.513 3.487 17 O -0.546 6.546 18 C -0.150 4.150 19 C -0.050 4.050 20 H 0.079 0.921 21 C -0.144 4.144 22 C -0.144 4.144 23 C -0.181 4.181 24 C -0.183 4.183 25 H 0.040 0.960 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.033 0.967 37 H 0.042 0.958 38 H 0.261 0.739 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.049 0.951 43 H 0.046 0.954 44 H 0.101 0.899 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.463 -14.207 -1.812 17.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.192 4.192 3 C 0.082 3.918 4 C -0.224 4.224 5 C -0.205 4.205 6 N -0.320 5.320 7 C 0.122 3.878 8 C -0.561 4.561 9 H 0.084 0.916 10 C -0.141 4.141 11 N -0.534 5.534 12 Si 0.718 3.282 13 H -0.208 1.208 14 H -0.213 1.213 15 H -0.200 1.200 16 C 0.300 3.700 17 O -0.424 6.424 18 C -0.189 4.189 19 C -0.069 4.069 20 H 0.098 0.902 21 C -0.201 4.201 22 C -0.162 4.162 23 C -0.218 4.218 24 C -0.220 4.220 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.119 0.881 45 H 0.112 0.888 46 H 0.108 0.892 47 H 0.109 0.891 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.176 -13.612 -2.250 16.570 hybrid contribution -1.063 -0.141 0.407 1.147 sum 8.113 -13.753 -1.843 16.074 Atomic orbital electron populations 1.21893 0.94925 1.00169 1.03770 1.22546 0.97555 0.96266 1.02846 1.20285 0.90850 0.91463 0.89216 1.22463 0.96007 1.02347 1.01560 1.22101 1.04293 1.00413 0.93711 1.48314 1.53493 1.24194 1.06048 1.19305 0.91476 0.79766 0.97244 1.21615 0.94916 0.93282 1.46307 0.91624 1.24925 0.98376 0.95039 0.95746 1.69941 1.35753 0.98145 1.49532 0.86620 0.85214 0.77912 0.78411 1.20756 1.21256 1.19984 1.20199 0.78894 0.88012 0.82885 1.90633 1.48094 1.59608 1.44054 1.22485 1.02939 0.96552 0.96936 1.20545 0.99966 0.91420 0.94968 0.90223 1.21816 0.97276 1.00793 1.00232 1.22402 0.97098 0.92951 1.03773 1.22989 1.03269 1.03640 0.91911 1.22946 1.01817 0.99435 0.97822 0.94139 0.91257 0.92083 0.89927 0.91879 0.92066 0.92027 0.92355 0.89807 0.93155 0.91871 0.94879 0.93970 0.92925 0.88453 0.89023 0.91103 0.93148 0.93538 0.88093 0.88809 0.89247 0.89101 0.88686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 7.90 37.16 0.29 -2.15 16 2 C -0.15 -2.17 4.28 -26.73 -0.11 -2.28 16 3 C 0.17 2.71 0.72 -131.82 -0.10 2.62 16 4 C -0.17 -2.24 8.45 37.16 0.31 -1.93 16 5 C -0.15 -2.47 7.11 37.16 0.26 -2.20 16 6 N -0.59 -12.05 1.70 -160.18 -0.27 -12.33 16 7 C 0.24 6.13 4.60 -5.19 -0.02 6.11 16 8 C -0.52 -14.12 8.32 -34.44 -0.29 -14.41 16 9 H 0.07 1.73 5.00 -52.49 -0.26 1.47 16 10 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 12 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 16 C 0.51 10.47 5.71 -10.99 -0.06 10.41 16 17 O -0.55 -13.50 14.10 5.56 0.08 -13.43 16 18 C -0.15 -2.27 2.69 -27.89 -0.08 -2.34 16 19 C -0.05 -0.72 2.19 -90.62 -0.20 -0.92 16 20 H 0.08 1.32 7.54 -51.93 -0.39 0.93 16 21 C -0.14 -2.05 8.93 37.16 0.33 -1.72 16 22 C -0.14 -1.63 5.15 -90.63 -0.47 -2.10 16 23 C -0.18 -1.91 10.18 -26.74 -0.27 -2.18 16 24 C -0.18 -1.93 9.67 -26.73 -0.26 -2.19 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 1.24 5.66 -51.93 -0.29 0.95 16 27 H 0.06 1.15 5.67 -51.93 -0.29 0.86 16 28 H 0.08 1.06 3.73 -51.93 -0.19 0.86 16 29 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.70 8.00 -51.93 -0.42 0.29 16 32 H 0.06 0.71 5.35 -51.93 -0.28 0.43 16 33 H 0.08 1.60 5.46 -51.93 -0.28 1.32 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 1.13 6.63 -51.93 -0.34 0.78 16 36 H 0.03 0.85 5.88 -51.93 -0.31 0.55 16 37 H 0.04 1.25 7.33 -51.93 -0.38 0.87 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.10 1.41 4.46 -51.93 -0.23 1.18 16 40 H 0.09 1.22 4.02 -51.93 -0.21 1.01 16 41 H 0.07 1.23 6.43 -51.93 -0.33 0.89 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.10 1.04 8.11 -51.93 -0.42 0.62 16 45 H 0.09 1.04 8.05 -51.93 -0.42 0.62 16 46 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 47 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.09 1.08 7.59 -51.93 -0.39 0.68 16 LS Contribution 349.63 15.07 5.27 5.27 Total: -1.00 -30.67 349.63 -7.92 -38.59 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -7.97 Total: 4.57 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -0.75 Total: -13.67 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.46 Total: -37.97 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.08 Total: -13.43 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.67 -7.92 -38.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787944016.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.720 kcal (2) G-P(sol) polarization free energy of solvation -30.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds