Wall clock time and date at job start Tue Mar 31 2020 05:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47394 * 2 1 4 4 H 1.09002 * 110.05053 * 306.41088 * 3 2 1 5 5 C 1.54266 * 110.03427 * 67.82579 * 3 2 1 6 6 C 1.55240 * 104.22933 * 142.89887 * 5 3 2 7 7 C 1.54885 * 102.58884 * 322.08419 * 6 5 3 8 8 C 1.53873 * 110.03383 * 185.00092 * 3 2 1 9 9 H 1.09000 * 110.07399 * 0.02562 * 8 3 2 10 10 C 1.50694 * 110.03605 * 121.43069 * 8 3 2 11 11 O 1.21278 * 120.00237 * 8.72474 * 10 8 3 12 12 N 1.34777 * 120.00118 * 188.73648 * 10 8 3 13 13 C 1.46507 * 119.99842 * 2.54712 * 12 10 8 14 14 C 1.50700 * 109.46637 * 86.34621 * 13 12 10 15 15 H 1.08006 * 120.00282 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99769 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00101 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99970 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47237 * 59.99474 * 18 16 14 20 20 H 1.48501 * 109.47062 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.46974 * 299.99595 * 18 16 14 22 22 C 1.46504 * 120.00216 * 182.55559 * 12 10 8 23 23 C 1.53001 * 109.47063 * 95.36222 * 22 12 10 24 24 C 1.52999 * 109.46987 * 175.00054 * 23 22 12 25 25 C 1.53004 * 109.47235 * 295.00250 * 23 22 12 26 26 H 1.09007 * 109.46813 * 60.00633 * 1 2 3 27 27 H 1.08996 * 109.46910 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47329 * 300.00809 * 1 2 3 29 29 H 1.09003 * 109.47503 * 239.99175 * 2 1 3 30 30 H 1.09007 * 109.46813 * 119.99367 * 2 1 3 31 31 H 1.08998 * 110.48963 * 261.57793 * 5 3 2 32 32 H 1.09002 * 110.48148 * 24.08872 * 5 3 2 33 33 H 1.09002 * 110.89778 * 203.79565 * 6 5 3 34 34 H 1.08994 * 110.76778 * 80.31612 * 6 5 3 35 35 H 1.09000 * 110.48828 * 279.18882 * 7 6 5 36 36 H 1.08998 * 110.48824 * 156.67582 * 7 6 5 37 37 H 1.08995 * 109.46938 * 206.34025 * 13 12 10 38 38 H 1.09000 * 109.47024 * 326.34815 * 13 12 10 39 39 H 0.97000 * 119.99916 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.47109 * 215.36156 * 22 12 10 41 41 H 1.08994 * 109.46627 * 335.36445 * 22 12 10 42 42 H 1.09003 * 109.46979 * 55.00123 * 23 22 12 43 43 H 1.09010 * 109.46593 * 60.00380 * 24 23 22 44 44 H 1.08997 * 109.46767 * 179.97438 * 24 23 22 45 45 H 1.08996 * 109.47467 * 300.00436 * 24 23 22 46 46 H 1.08993 * 109.47059 * 186.04784 * 25 23 22 47 47 H 1.09003 * 109.46793 * 306.04908 * 25 23 22 48 48 H 1.09002 * 109.46895 * 66.04478 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5916 1.9974 -0.8241 5 6 1.7005 2.1231 1.3421 6 6 2.9312 3.0225 1.6359 7 6 4.1124 2.1496 1.1441 8 6 3.5735 1.4593 -0.1260 9 1 3.9551 0.4401 -0.1877 10 6 3.9825 2.2380 -1.3497 11 8 3.1542 2.8683 -1.9722 12 7 5.2686 2.2338 -1.7524 13 6 6.2587 1.4277 -1.0337 14 6 6.2619 0.0258 -1.5866 15 1 5.5930 -0.2384 -2.3925 16 6 7.1179 -0.9198 -1.0630 17 7 7.9319 -0.5982 -0.0815 18 14 7.1224 -2.6573 -1.7489 19 1 7.4696 -2.6189 -3.1922 20 1 8.1249 -3.4748 -1.0195 21 1 5.7756 -3.2598 -1.5796 22 6 5.6768 3.0354 -2.9088 23 6 6.2210 4.3824 -2.4291 24 6 6.7618 5.1690 -3.6248 25 6 5.0974 5.1779 -1.7614 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8898 29 1 1.8934 -0.5140 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 0.7998 2.7292 1.2454 32 1 1.5749 1.3772 2.1270 33 1 3.0189 3.2250 2.7034 34 1 2.8752 3.9516 1.0688 35 1 4.3785 1.4082 1.8975 36 1 4.9732 2.7733 0.9032 37 1 7.2470 1.8698 -1.1588 38 1 6.0044 1.3998 0.0259 39 1 8.5338 -1.2635 0.2871 40 1 6.4527 2.5062 -3.4620 41 1 4.8168 3.2012 -3.5576 42 1 7.0239 4.2150 -1.7111 43 1 5.9588 5.3364 -4.3427 44 1 7.1491 6.1288 -3.2831 45 1 7.5622 4.6023 -4.1005 46 1 5.4561 6.1775 -1.5162 47 1 4.2505 5.2529 -2.4435 48 1 4.7852 4.6698 -0.8490 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822808917.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:46 Heat of formation + Delta-G solvation = -80.883391 kcal Electronic energy + Delta-G solvation = -24213.899661 eV Core-core repulsion = 21073.984090 eV Total energy + Delta-G solvation = -3139.915571 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.86112 -37.44589 -35.63980 -34.11258 -32.79071 -32.23037 -29.01214 -27.40558 -27.23814 -26.75234 -25.41447 -23.13221 -22.45604 -20.79213 -19.96678 -19.20070 -17.92034 -16.67418 -15.97194 -15.69401 -15.10786 -14.72636 -14.32650 -14.27881 -14.13922 -13.90440 -13.13087 -12.96845 -12.68743 -12.46475 -12.35464 -12.11916 -11.89898 -11.70422 -11.53193 -11.47371 -11.17161 -10.97209 -10.87452 -10.81252 -10.67605 -10.57904 -10.46915 -10.39150 -10.29288 -10.25160 -10.10214 -10.04331 -9.90435 -9.64886 -8.80555 -8.51504 -7.60347 -6.16603 -4.23594 3.24238 3.29249 3.31817 3.53756 4.02135 4.34948 4.93480 5.02033 5.10032 5.17009 5.28163 5.33259 5.43696 5.47318 5.50361 5.60485 5.66596 5.89502 5.90980 5.97621 6.00747 6.03016 6.06518 6.07793 6.11120 6.18022 6.20660 6.25424 6.28467 6.33867 6.37852 6.41573 6.45318 6.50694 6.52926 6.65087 6.69526 6.73508 6.78910 6.85893 7.00147 7.24952 7.62946 7.79507 8.10016 8.44223 8.83009 9.14823 9.44260 10.89699 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.009896 B = 0.008385 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.807718 B = 3338.496205 C = 5218.820346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.085 4.085 4 H 0.093 0.907 5 C -0.113 4.113 6 C -0.125 4.125 7 C -0.106 4.106 8 C -0.107 4.107 9 H 0.110 0.890 10 C 0.527 3.473 11 O -0.574 6.574 12 N -0.594 5.594 13 C 0.234 3.766 14 C -0.536 4.536 15 H 0.059 0.941 16 C 0.066 3.934 17 N -0.891 5.891 18 Si 0.894 3.106 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.122 3.878 23 C -0.112 4.112 24 C -0.141 4.141 25 C -0.134 4.134 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.033 0.967 38 H 0.045 0.955 39 H 0.265 0.735 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.054 0.946 46 H 0.041 0.959 47 H 0.056 0.944 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.247 6.264 1.475 9.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.104 4.104 4 H 0.111 0.889 5 C -0.151 4.151 6 C -0.163 4.163 7 C -0.144 4.144 8 C -0.128 4.128 9 H 0.128 0.872 10 C 0.315 3.685 11 O -0.456 6.456 12 N -0.324 5.324 13 C 0.114 3.886 14 C -0.575 4.575 15 H 0.077 0.923 16 C -0.137 4.137 17 N -0.529 5.529 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.001 4.001 23 C -0.132 4.132 24 C -0.199 4.199 25 C -0.192 4.192 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.060 0.940 47 H 0.075 0.925 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.490 6.494 1.272 9.995 hybrid contribution 0.389 -1.192 -0.333 1.297 sum -7.101 5.302 0.939 8.912 Atomic orbital electron populations 1.21763 0.96370 1.00900 1.01544 1.21635 0.95276 0.96509 1.02055 1.21811 0.93951 0.95965 0.98634 0.88926 1.22450 0.97483 0.98191 0.96967 1.22578 0.95215 0.98416 1.00062 1.22283 0.97545 0.98655 0.95946 1.21903 0.95821 1.01739 0.93313 0.87238 1.20337 0.81940 0.80530 0.85645 1.90525 1.51123 1.46128 1.57785 1.48142 1.08994 1.44958 1.30262 1.19501 0.86974 0.89381 0.92783 1.21476 1.21592 0.95078 1.19373 0.92313 1.24916 0.95060 0.98882 0.94831 1.69910 1.22947 1.34874 1.25183 0.86624 0.77954 0.84100 0.79212 1.20192 1.21157 1.20079 1.21354 0.99821 0.90161 0.88809 1.21504 0.98316 0.95688 0.97687 1.21748 1.00648 0.99546 0.97952 1.21731 0.98193 0.98322 1.00924 0.92941 0.93312 0.92940 0.91951 0.92090 0.92315 0.91909 0.91990 0.91799 0.90860 0.91301 0.94925 0.93684 0.92532 0.91022 0.90866 0.91159 0.92890 0.93021 0.92702 0.93956 0.92487 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.77 37.16 0.36 -1.49 16 2 C -0.12 -1.74 5.06 -26.73 -0.14 -1.88 16 3 C -0.08 -1.38 2.52 -89.50 -0.23 -1.60 16 4 H 0.09 1.69 6.43 -51.93 -0.33 1.35 16 5 C -0.11 -1.57 5.54 -24.88 -0.14 -1.71 16 6 C -0.13 -1.80 6.93 -24.55 -0.17 -1.97 16 7 C -0.11 -1.79 5.08 -25.07 -0.13 -1.92 16 8 C -0.11 -1.98 2.06 -90.65 -0.19 -2.17 16 9 H 0.11 2.27 6.75 -51.93 -0.35 1.92 16 10 C 0.53 10.88 5.51 -10.99 -0.06 10.82 16 11 O -0.57 -12.61 13.87 5.56 0.08 -12.54 16 12 N -0.59 -12.43 2.27 -175.06 -0.40 -12.83 16 13 C 0.23 5.48 4.67 -5.19 -0.02 5.45 16 14 C -0.54 -13.88 8.79 -34.44 -0.30 -14.18 16 15 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 16 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -24.31 13.29 55.43 0.74 -23.57 16 18 Si 0.89 20.57 29.54 -169.99 -5.02 15.54 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 C 0.12 2.29 4.95 -4.04 -0.02 2.27 16 23 C -0.11 -1.81 3.12 -90.62 -0.28 -2.10 16 24 C -0.14 -1.87 9.19 37.16 0.34 -1.53 16 25 C -0.13 -2.16 8.07 37.16 0.30 -1.86 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.60 7.51 -51.93 -0.39 0.21 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.88 8.00 -51.93 -0.42 0.46 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.80 7.76 -51.93 -0.40 0.40 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.07 1.23 6.80 -51.93 -0.35 0.88 16 37 H 0.03 0.81 8.04 -51.93 -0.42 0.39 16 38 H 0.05 1.07 5.04 -51.93 -0.26 0.81 16 39 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.07 1.35 8.11 -51.93 -0.42 0.93 16 41 H 0.07 1.40 7.24 -51.93 -0.38 1.03 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.96 8.00 -51.93 -0.42 0.54 16 48 H 0.05 0.91 7.02 -51.93 -0.36 0.54 16 LS Contribution 367.54 15.07 5.54 5.54 Total: -1.00 -27.27 367.54 -8.95 -36.22 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -9.12 Total: 3.86 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -0.77 Total: -12.22 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.34 Total: -36.40 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.08 Total: -12.54 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.27 -8.95 -36.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822808917.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.663 kcal (2) G-P(sol) polarization free energy of solvation -27.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds