Wall clock time and date at job start Tue Mar 31 2020 05:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47394 * 2 1 4 4 H 1.09002 * 110.05053 * 306.41088 * 3 2 1 5 5 C 1.54266 * 110.03427 * 67.82579 * 3 2 1 6 6 C 1.55240 * 104.22933 * 142.89887 * 5 3 2 7 7 C 1.54885 * 102.58884 * 322.08419 * 6 5 3 8 8 C 1.53873 * 110.03383 * 185.00092 * 3 2 1 9 9 H 1.09000 * 110.07399 * 0.02562 * 8 3 2 10 10 C 1.50694 * 110.03605 * 121.43069 * 8 3 2 11 11 O 1.21278 * 120.00237 * 8.72474 * 10 8 3 12 12 N 1.34777 * 120.00118 * 188.73648 * 10 8 3 13 13 C 1.46507 * 119.99842 * 2.54712 * 12 10 8 14 14 C 1.50700 * 109.46637 * 86.34621 * 13 12 10 15 15 H 1.08006 * 120.00282 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99769 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00101 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99970 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47237 * 59.99474 * 18 16 14 20 20 H 1.48501 * 109.47062 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.46974 * 299.99595 * 18 16 14 22 22 C 1.46504 * 120.00216 * 182.55559 * 12 10 8 23 23 C 1.53001 * 109.47063 * 95.36222 * 22 12 10 24 24 C 1.52999 * 109.46987 * 175.00054 * 23 22 12 25 25 C 1.53004 * 109.47235 * 295.00250 * 23 22 12 26 26 H 1.09007 * 109.46813 * 60.00633 * 1 2 3 27 27 H 1.08996 * 109.46910 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47329 * 300.00809 * 1 2 3 29 29 H 1.09003 * 109.47503 * 239.99175 * 2 1 3 30 30 H 1.09007 * 109.46813 * 119.99367 * 2 1 3 31 31 H 1.08998 * 110.48963 * 261.57793 * 5 3 2 32 32 H 1.09002 * 110.48148 * 24.08872 * 5 3 2 33 33 H 1.09002 * 110.89778 * 203.79565 * 6 5 3 34 34 H 1.08994 * 110.76778 * 80.31612 * 6 5 3 35 35 H 1.09000 * 110.48828 * 279.18882 * 7 6 5 36 36 H 1.08998 * 110.48824 * 156.67582 * 7 6 5 37 37 H 1.08995 * 109.46938 * 206.34025 * 13 12 10 38 38 H 1.09000 * 109.47024 * 326.34815 * 13 12 10 39 39 H 0.97000 * 119.99916 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.47109 * 215.36156 * 22 12 10 41 41 H 1.08994 * 109.46627 * 335.36445 * 22 12 10 42 42 H 1.09003 * 109.46979 * 55.00123 * 23 22 12 43 43 H 1.09010 * 109.46593 * 60.00380 * 24 23 22 44 44 H 1.08997 * 109.46767 * 179.97438 * 24 23 22 45 45 H 1.08996 * 109.47467 * 300.00436 * 24 23 22 46 46 H 1.08993 * 109.47059 * 186.04784 * 25 23 22 47 47 H 1.09003 * 109.46793 * 306.04908 * 25 23 22 48 48 H 1.09002 * 109.46895 * 66.04478 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5916 1.9974 -0.8241 5 6 1.7005 2.1231 1.3421 6 6 2.9312 3.0225 1.6359 7 6 4.1124 2.1496 1.1441 8 6 3.5735 1.4593 -0.1260 9 1 3.9551 0.4401 -0.1877 10 6 3.9825 2.2380 -1.3497 11 8 3.1542 2.8683 -1.9722 12 7 5.2686 2.2338 -1.7524 13 6 6.2587 1.4277 -1.0337 14 6 6.2619 0.0258 -1.5866 15 1 5.5930 -0.2384 -2.3925 16 6 7.1179 -0.9198 -1.0630 17 7 7.9319 -0.5982 -0.0815 18 14 7.1224 -2.6573 -1.7489 19 1 7.4696 -2.6189 -3.1922 20 1 8.1249 -3.4748 -1.0195 21 1 5.7756 -3.2598 -1.5796 22 6 5.6768 3.0354 -2.9088 23 6 6.2210 4.3824 -2.4291 24 6 6.7618 5.1690 -3.6248 25 6 5.0974 5.1779 -1.7614 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8898 29 1 1.8934 -0.5140 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 0.7998 2.7292 1.2454 32 1 1.5749 1.3772 2.1270 33 1 3.0189 3.2250 2.7034 34 1 2.8752 3.9516 1.0688 35 1 4.3785 1.4082 1.8975 36 1 4.9732 2.7733 0.9032 37 1 7.2470 1.8698 -1.1588 38 1 6.0044 1.3998 0.0259 39 1 8.5338 -1.2635 0.2871 40 1 6.4527 2.5062 -3.4620 41 1 4.8168 3.2012 -3.5576 42 1 7.0239 4.2150 -1.7111 43 1 5.9588 5.3364 -4.3427 44 1 7.1491 6.1288 -3.2831 45 1 7.5622 4.6023 -4.1005 46 1 5.4561 6.1775 -1.5162 47 1 4.2505 5.2529 -2.4435 48 1 4.7852 4.6698 -0.8490 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822808917.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:46 Heat of formation + Delta-G solvation = -92.482068 kcal Electronic energy + Delta-G solvation = -24214.402618 eV Core-core repulsion = 21073.984090 eV Total energy + Delta-G solvation = -3140.418528 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.43008 -38.83775 -37.20976 -35.78702 -34.26254 -33.86022 -30.37882 -29.28400 -28.46425 -28.00573 -26.90476 -25.01498 -23.72839 -22.12808 -21.27773 -20.58642 -19.52945 -18.62818 -17.63763 -17.32661 -16.55971 -16.41220 -15.86869 -15.58630 -15.53914 -15.17060 -14.46520 -14.41311 -14.26311 -13.88459 -13.75825 -13.68021 -13.35176 -13.15673 -12.87173 -12.81056 -12.71782 -12.59395 -12.40253 -12.30280 -12.10854 -11.96510 -11.91290 -11.81654 -11.71421 -11.58849 -11.55873 -11.46745 -11.27992 -11.23776 -10.64914 -10.38292 -9.36405 -8.20071 -6.34438 1.39818 1.40534 1.48219 1.86220 2.32929 2.47624 3.09113 3.63648 3.71644 3.75058 3.92799 4.03643 4.16898 4.21899 4.28275 4.34708 4.46218 4.63486 4.64813 4.66209 4.78043 4.78841 4.80339 4.85122 4.86257 4.88987 4.96041 4.96739 4.99832 5.03879 5.06703 5.14169 5.18300 5.19635 5.25861 5.27905 5.34652 5.39011 5.42908 5.46217 5.48451 5.65597 5.67482 5.92664 6.08743 6.60605 6.85398 7.33413 7.48477 8.84655 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.009896 B = 0.008385 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.807718 B = 3338.496205 C = 5218.820346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.082 4.082 4 H 0.072 0.928 5 C -0.106 4.106 6 C -0.117 4.117 7 C -0.105 4.105 8 C -0.108 4.108 9 H 0.083 0.917 10 C 0.523 3.477 11 O -0.588 6.588 12 N -0.598 5.598 13 C 0.251 3.749 14 C -0.547 4.547 15 H 0.046 0.954 16 C 0.026 3.974 17 N -0.916 5.916 18 Si 0.950 3.050 19 H -0.275 1.275 20 H -0.279 1.279 21 H -0.272 1.272 22 C 0.118 3.882 23 C -0.107 4.107 24 C -0.134 4.134 25 C -0.125 4.125 26 H 0.047 0.953 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.039 0.961 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.051 0.949 37 H 0.015 0.985 38 H 0.040 0.960 39 H 0.268 0.732 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.071 0.929 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.047 0.953 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.107 6.512 2.120 10.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.101 4.101 4 H 0.090 0.910 5 C -0.143 4.143 6 C -0.155 4.155 7 C -0.143 4.143 8 C -0.129 4.129 9 H 0.101 0.899 10 C 0.313 3.687 11 O -0.471 6.471 12 N -0.327 5.327 13 C 0.130 3.870 14 C -0.586 4.586 15 H 0.064 0.936 16 C -0.175 4.175 17 N -0.555 5.555 18 Si 0.776 3.224 19 H -0.200 1.200 20 H -0.204 1.204 21 H -0.197 1.197 22 C -0.005 4.005 23 C -0.127 4.127 24 C -0.192 4.192 25 C -0.183 4.183 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.033 0.967 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.066 0.934 48 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -8.353 6.753 1.907 10.909 hybrid contribution 0.678 -1.253 -0.574 1.536 sum -7.675 5.500 1.333 9.536 Atomic orbital electron populations 1.21716 0.94127 1.01985 1.02141 1.21619 0.97224 0.95314 1.01255 1.21779 0.91789 0.96944 0.99542 0.91016 1.22437 0.97738 0.98427 0.95686 1.22545 0.94037 0.97484 1.01412 1.22263 0.98055 0.98808 0.95161 1.21940 0.97815 0.99879 0.93259 0.89874 1.20708 0.81546 0.80400 0.86070 1.90505 1.51282 1.46920 1.58413 1.48148 1.08858 1.45055 1.30674 1.19130 0.86580 0.88617 0.92639 1.21627 1.21425 0.96378 1.19129 0.93611 1.25572 0.94666 1.02221 0.95032 1.69992 1.23435 1.36039 1.26021 0.85729 0.78106 0.80024 0.78583 1.19994 1.20371 1.19715 1.21500 0.99431 0.91373 0.88182 1.21450 0.97926 0.94565 0.98742 1.21702 1.00898 0.99955 0.96655 1.21639 0.97747 0.99339 0.99550 0.93391 0.92024 0.91268 0.94223 0.91476 0.90658 0.90106 0.89350 0.92695 0.90532 0.93031 0.96691 0.94187 0.92297 0.91652 0.91414 0.92264 0.92225 0.91020 0.92318 0.91413 0.93393 0.95226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.77 71.98 0.70 -2.59 16 2 C -0.12 -3.40 5.06 30.59 0.15 -3.25 16 3 C -0.08 -2.63 2.52 -10.07 -0.03 -2.65 16 4 H 0.07 2.63 6.43 -2.39 -0.02 2.61 16 5 C -0.11 -2.69 5.54 31.79 0.18 -2.52 16 6 C -0.12 -3.19 6.93 32.01 0.22 -2.97 16 7 C -0.10 -3.55 5.08 31.67 0.16 -3.39 16 8 C -0.11 -4.11 2.06 -10.81 -0.02 -4.13 16 9 H 0.08 3.60 6.75 -2.39 -0.02 3.58 16 10 C 0.52 22.33 5.51 87.66 0.48 22.82 16 11 O -0.59 -26.52 13.87 -3.02 -0.04 -26.57 16 12 N -0.60 -25.99 2.27 -826.15 -1.88 -27.86 16 13 C 0.25 12.23 4.67 85.63 0.40 12.63 16 14 C -0.55 -29.05 8.79 25.60 0.22 -28.83 16 15 H 0.05 2.50 7.81 -2.91 -0.02 2.48 16 16 C 0.03 1.37 5.46 84.65 0.46 1.83 16 17 N -0.92 -50.44 13.29 21.45 0.28 -50.15 16 18 Si 0.95 42.26 29.54 68.60 2.03 44.29 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 20 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 22 C 0.12 4.56 4.95 86.38 0.43 4.98 16 23 C -0.11 -3.46 3.12 -10.79 -0.03 -3.49 16 24 C -0.13 -3.37 9.19 71.98 0.66 -2.71 16 25 C -0.13 -3.97 8.07 71.98 0.58 -3.39 16 26 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 27 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.07 1.37 7.51 -2.39 -0.02 1.35 16 29 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 1.86 8.00 -2.38 -0.02 1.84 16 31 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.08 1.80 7.76 -2.39 -0.02 1.79 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.05 1.90 6.80 -2.39 -0.02 1.88 16 37 H 0.01 0.78 8.04 -2.39 -0.02 0.76 16 38 H 0.04 1.99 5.04 -2.39 -0.01 1.98 16 39 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 40 H 0.07 2.55 8.11 -2.39 -0.02 2.53 16 41 H 0.07 2.67 7.24 -2.39 -0.02 2.65 16 42 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 44 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 46 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.05 1.59 8.00 -2.39 -0.02 1.57 16 48 H 0.03 1.04 7.02 -2.39 -0.02 1.03 16 Total: -1.00 -58.91 367.54 5.86 -53.06 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.89 Total: 24.89 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: 4.58 Total: -17.65 kcal Atomic # 7 Polarization: -76.42 SS G_CDS: -1.59 Total: -78.01 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.04 Total: -26.57 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -58.91 5.86 -53.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822808917.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.427 kcal (2) G-P(sol) polarization free energy of solvation -58.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds