Wall clock time and date at job start Tue Mar 31 2020 05:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47263 * 2 1 4 4 H 1.08997 * 110.01768 * 304.56771 * 3 2 1 5 5 C 1.54272 * 110.03037 * 65.95983 * 3 2 1 6 6 C 1.54882 * 104.19611 * 142.94004 * 5 3 2 7 7 C 1.54888 * 102.75152 * 322.05789 * 6 5 3 8 8 C 1.53879 * 110.03352 * 183.17210 * 3 2 1 9 9 H 1.08995 * 110.03018 * 121.38431 * 8 3 2 10 10 C 1.50702 * 110.02947 * 359.95714 * 8 3 2 11 11 O 1.21280 * 119.99941 * 274.99650 * 10 8 3 12 12 N 1.34776 * 120.00087 * 95.00457 * 10 8 3 13 13 C 1.46496 * 120.00155 * 0.87212 * 12 10 8 14 14 C 1.50701 * 109.47115 * 90.00336 * 13 12 10 15 15 H 1.08006 * 119.99515 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00559 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99655 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00237 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47043 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46846 * 120.00075 * 18 16 14 21 21 H 1.48502 * 109.46984 * 239.99787 * 18 16 14 22 22 C 1.46502 * 119.99786 * 180.88112 * 12 10 8 23 23 C 1.53001 * 109.47326 * 88.18042 * 22 12 10 24 24 C 1.52997 * 109.47102 * 171.71803 * 23 22 12 25 25 C 1.53004 * 109.46904 * 291.72085 * 23 22 12 26 26 H 1.09002 * 109.47572 * 59.99380 * 1 2 3 27 27 H 1.09000 * 109.47692 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46982 * 299.99502 * 1 2 3 29 29 H 1.09004 * 109.46918 * 240.00015 * 2 1 3 30 30 H 1.08995 * 109.47247 * 120.00798 * 2 1 3 31 31 H 1.08994 * 110.48110 * 261.62331 * 5 3 2 32 32 H 1.09000 * 110.48125 * 24.25974 * 5 3 2 33 33 H 1.09001 * 110.75679 * 80.37682 * 6 5 3 34 34 H 1.08999 * 110.75533 * 203.73771 * 6 5 3 35 35 H 1.08997 * 110.48485 * 156.62101 * 7 6 5 36 36 H 1.09006 * 110.48471 * 279.13100 * 7 6 5 37 37 H 1.09001 * 109.47570 * 210.00628 * 13 12 10 38 38 H 1.08996 * 109.47203 * 330.00799 * 13 12 10 39 39 H 0.96991 * 119.99906 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.46569 * 208.17899 * 22 12 10 41 41 H 1.08992 * 109.47480 * 328.17698 * 22 12 10 42 42 H 1.09002 * 109.47281 * 51.72087 * 23 22 12 43 43 H 1.09002 * 109.46822 * 60.00002 * 24 23 22 44 44 H 1.08999 * 109.47309 * 179.97438 * 24 23 22 45 45 H 1.08996 * 109.47286 * 300.00276 * 24 23 22 46 46 H 1.08999 * 109.46737 * 184.88500 * 25 23 22 47 47 H 1.08998 * 109.46930 * 304.88056 * 25 23 22 48 48 H 1.08992 * 109.47161 * 64.88095 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6165 1.9879 -0.8433 5 6 1.6594 2.1375 1.3237 6 6 2.8778 3.0387 1.6434 7 6 4.0762 2.1639 1.1988 8 6 3.5766 1.4583 -0.0800 9 1 3.8988 2.0114 -0.9622 10 6 4.1052 0.0480 -0.1326 11 8 4.2870 -0.5702 0.8949 12 7 4.3762 -0.5262 -1.3214 13 6 4.1749 0.2271 -2.5616 14 6 5.4419 0.9634 -2.9133 15 1 6.3103 0.8783 -2.2769 16 6 5.4925 1.7457 -4.0475 17 7 4.4348 1.8498 -4.8223 18 14 7.0633 2.6578 -4.4838 19 1 8.1001 2.3764 -3.4586 20 1 7.5461 2.2042 -5.8129 21 1 6.7924 4.1173 -4.5271 22 6 4.8718 -1.9039 -1.3735 23 6 3.6869 -2.8707 -1.4206 24 6 4.1965 -4.2895 -1.6822 25 6 2.9449 -2.8337 -0.0831 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 0.7618 2.7417 1.1929 32 1 1.5126 1.4003 2.1130 33 1 2.8378 3.9618 1.0651 34 1 2.9305 3.2525 2.7109 35 1 4.9421 2.7876 0.9770 36 1 4.3211 1.4326 1.9692 37 1 3.9189 -0.4609 -3.3673 38 1 3.3648 0.9433 -2.4243 39 1 4.4705 2.3998 -5.6204 40 1 5.4844 -2.0361 -2.2653 41 1 5.4721 -2.1078 -0.4869 42 1 3.0084 -2.5752 -2.2209 43 1 4.8750 -4.5850 -0.8819 44 1 3.3525 -4.9784 -1.7153 45 1 4.7251 -4.3158 -2.6350 46 1 2.1545 -3.5842 -0.0852 47 1 3.6440 -3.0447 0.7261 48 1 2.5078 -1.8460 0.0627 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822808921.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:51 Heat of formation + Delta-G solvation = -70.811490 kcal Electronic energy + Delta-G solvation = -24628.542983 eV Core-core repulsion = 21489.064162 eV Total energy + Delta-G solvation = -3139.478821 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.10573 -37.33040 -35.59447 -34.11347 -32.85729 -32.26905 -29.07218 -27.41109 -27.26021 -26.76121 -25.37579 -22.99697 -22.54060 -20.80678 -20.06228 -19.47739 -17.60843 -16.50148 -16.30317 -15.65635 -15.33397 -14.63601 -14.48173 -14.11729 -14.07396 -13.95601 -13.03977 -12.89680 -12.80325 -12.46978 -12.28693 -12.02614 -11.87755 -11.83460 -11.52123 -11.29076 -11.16635 -10.99728 -10.93589 -10.86115 -10.69795 -10.57205 -10.51974 -10.32671 -10.29061 -10.12418 -10.07449 -9.93688 -9.83734 -9.60647 -8.78833 -8.53218 -7.58937 -6.17401 -4.24744 3.21319 3.30122 3.34285 3.51583 4.03551 4.34646 4.89878 4.98955 5.06392 5.15789 5.31670 5.36354 5.43409 5.50209 5.52424 5.59786 5.71067 5.91553 5.93434 5.94829 5.98463 6.04223 6.04542 6.09561 6.10271 6.17849 6.21594 6.26063 6.29811 6.33307 6.39894 6.44467 6.46560 6.49374 6.56987 6.63833 6.71762 6.75557 6.86098 6.89137 6.93435 7.23056 7.62988 7.78870 8.08425 8.44626 8.83076 9.15291 9.43767 10.88845 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.011905 B = 0.007787 C = 0.005685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.319385 B = 3594.712132 C = 4923.867828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C -0.073 4.073 4 H 0.076 0.924 5 C -0.115 4.115 6 C -0.123 4.123 7 C -0.110 4.110 8 C -0.115 4.115 9 H 0.110 0.890 10 C 0.531 3.469 11 O -0.573 6.573 12 N -0.595 5.595 13 C 0.238 3.762 14 C -0.536 4.536 15 H 0.060 0.940 16 C 0.065 3.935 17 N -0.891 5.891 18 Si 0.894 3.106 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.282 1.282 22 C 0.125 3.875 23 C -0.111 4.111 24 C -0.141 4.141 25 C -0.159 4.159 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.033 0.967 38 H 0.040 0.960 39 H 0.264 0.736 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.051 0.949 44 H 0.050 0.950 45 H 0.053 0.947 46 H 0.035 0.965 47 H 0.054 0.946 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.615 -3.034 7.938 10.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C -0.092 4.092 4 H 0.095 0.905 5 C -0.152 4.152 6 C -0.160 4.160 7 C -0.148 4.148 8 C -0.136 4.136 9 H 0.128 0.872 10 C 0.320 3.680 11 O -0.454 6.454 12 N -0.325 5.325 13 C 0.118 3.882 14 C -0.575 4.575 15 H 0.079 0.921 16 C -0.138 4.138 17 N -0.529 5.529 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.208 1.208 22 C 0.001 3.999 23 C -0.131 4.131 24 C -0.199 4.199 25 C -0.215 4.215 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.055 0.945 47 H 0.073 0.927 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.577 -3.275 8.256 10.488 hybrid contribution 0.906 0.559 -0.711 1.281 sum -4.671 -2.716 7.545 9.280 Atomic orbital electron populations 1.21761 0.96235 1.01061 1.01461 1.22098 0.95612 0.96466 1.03006 1.21649 0.93300 0.96214 0.98049 0.90545 1.22418 0.97487 0.98228 0.97087 1.22465 0.95144 0.98158 1.00275 1.22325 0.97391 0.98368 0.96743 1.22079 0.95597 0.94666 1.01238 0.87155 1.20203 0.76625 0.88108 0.83035 1.90551 1.55555 1.65322 1.33978 1.48219 1.63308 1.13040 1.07906 1.19407 0.97193 0.91373 0.80276 1.21566 0.98641 1.28514 1.08757 0.92127 1.24936 0.96501 0.96423 0.95940 1.69933 1.28656 1.39633 1.14677 0.86500 0.83392 0.79554 0.78409 1.19682 1.20891 1.20826 1.21341 0.95037 0.81359 1.02145 1.21508 0.98138 0.94967 0.98451 1.21758 1.00706 0.96183 1.01280 1.22245 0.99661 1.02972 0.96663 0.92872 0.93256 0.92973 0.90872 0.90563 0.92106 0.91642 0.91660 0.91987 0.91871 0.90282 0.94911 0.94227 0.92637 0.90791 0.91307 0.91412 0.92941 0.93110 0.92782 0.94546 0.92692 0.90211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.75 37.15 0.36 -1.57 16 2 C -0.13 -2.13 2.83 -26.74 -0.08 -2.20 16 3 C -0.07 -1.17 2.82 -89.50 -0.25 -1.42 16 4 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 5 C -0.11 -1.56 5.44 -25.07 -0.14 -1.70 16 6 C -0.12 -1.68 6.91 -24.74 -0.17 -1.85 16 7 C -0.11 -1.83 6.32 -25.02 -0.16 -1.98 16 8 C -0.11 -2.12 2.43 -90.60 -0.22 -2.34 16 9 H 0.11 2.31 6.09 -51.93 -0.32 1.99 16 10 C 0.53 10.75 3.76 -10.98 -0.04 10.71 16 11 O -0.57 -12.23 12.61 5.56 0.07 -12.16 16 12 N -0.60 -12.33 1.98 -175.06 -0.35 -12.68 16 13 C 0.24 5.57 4.76 -5.20 -0.02 5.54 16 14 C -0.54 -13.87 8.97 -34.44 -0.31 -14.18 16 15 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -24.33 13.29 55.43 0.74 -23.59 16 18 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 22 C 0.12 2.34 4.99 -4.04 -0.02 2.32 16 23 C -0.11 -1.80 3.10 -90.62 -0.28 -2.08 16 24 C -0.14 -1.91 9.19 37.16 0.34 -1.57 16 25 C -0.16 -2.57 7.84 37.16 0.29 -2.28 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.62 7.44 -51.93 -0.39 0.23 16 29 H 0.07 1.29 5.99 -51.93 -0.31 0.98 16 30 H 0.08 1.30 5.77 -51.93 -0.30 1.00 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.89 7.79 -51.93 -0.40 0.49 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 1.39 6.92 -51.93 -0.36 1.03 16 37 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 38 H 0.04 0.96 6.32 -51.93 -0.33 0.63 16 39 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 40 H 0.07 1.40 8.04 -51.93 -0.42 0.98 16 41 H 0.07 1.32 7.44 -51.93 -0.39 0.93 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.05 0.94 7.88 -51.93 -0.41 0.53 16 48 H 0.08 1.37 1.81 -51.93 -0.09 1.28 16 LS Contribution 356.69 15.07 5.38 5.38 Total: -1.00 -27.10 356.69 -8.73 -35.83 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -8.75 Total: 4.70 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -0.79 Total: -13.01 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.39 Total: -36.27 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.07 Total: -12.16 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.10 -8.73 -35.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822808921.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.982 kcal (2) G-P(sol) polarization free energy of solvation -27.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds