Wall clock time and date at job start Tue Mar 31 2020 05:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 119.99624 * 2 1 4 4 C 1.52997 * 109.47501 * 124.99797 * 3 2 1 5 5 C 1.52998 * 109.47515 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.46981 * 54.99691 * 5 4 3 7 7 N 1.46906 * 109.47048 * 295.00073 * 5 4 3 8 8 C 1.46896 * 111.00200 * 152.38269 * 7 5 4 9 9 C 1.52992 * 109.47184 * 174.39712 * 8 7 5 10 10 C 1.53002 * 109.47184 * 299.99862 * 9 8 7 11 11 C 1.53003 * 109.47291 * 60.00002 * 9 8 7 12 12 C 1.50705 * 109.47167 * 179.97438 * 9 8 7 13 13 H 1.08003 * 119.99520 * 359.97438 * 12 9 8 14 14 C 1.37873 * 120.00421 * 180.02562 * 12 9 8 15 15 N 1.31517 * 119.99581 * 359.97438 * 14 12 9 16 16 Si 1.86796 * 120.00458 * 179.97438 * 14 12 9 17 17 H 1.48498 * 109.46861 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47507 * 119.99663 * 16 14 12 19 19 H 1.48500 * 109.47277 * 239.99798 * 16 14 12 20 20 C 1.53001 * 109.46972 * 175.00280 * 5 4 3 21 21 H 1.09001 * 109.86381 * 185.73944 * 20 5 4 22 22 C 1.54098 * 109.88058 * 64.73263 * 20 5 4 23 23 C 1.54807 * 104.19053 * 238.39459 * 22 20 5 24 24 C 1.54997 * 102.12063 * 339.10285 * 23 22 20 25 25 O 1.43737 * 110.00326 * 306.82420 * 20 5 4 26 26 H 1.07998 * 119.99781 * 180.02562 * 1 2 3 27 27 H 1.07996 * 120.00028 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.00028 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47486 * 4.99286 * 3 2 1 30 30 H 1.09004 * 109.46947 * 245.00091 * 3 2 1 31 31 H 1.09008 * 109.46921 * 59.99694 * 4 3 2 32 32 H 1.09004 * 109.47260 * 300.00103 * 4 3 2 33 33 H 1.00898 * 110.99747 * 28.42192 * 7 5 4 34 34 H 1.09004 * 109.46680 * 294.39636 * 8 7 5 35 35 H 1.08998 * 109.47288 * 54.39172 * 8 7 5 36 36 H 1.08996 * 109.47176 * 60.00260 * 10 9 8 37 37 H 1.09003 * 109.47274 * 180.02562 * 10 9 8 38 38 H 1.09007 * 109.46703 * 299.99875 * 10 9 8 39 39 H 1.08997 * 109.47229 * 60.00317 * 11 9 8 40 40 H 1.09003 * 109.46933 * 179.97438 * 11 9 8 41 41 H 1.08996 * 109.47109 * 299.99765 * 11 9 8 42 42 H 0.97004 * 120.00142 * 180.02562 * 15 14 12 43 43 H 1.09000 * 110.48722 * 119.71511 * 22 20 5 44 44 H 1.09002 * 110.49030 * 357.07556 * 22 20 5 45 45 H 1.09000 * 110.90671 * 97.31632 * 23 22 20 46 46 H 1.08998 * 110.90681 * 220.89164 * 23 22 20 47 47 H 1.09000 * 110.61729 * 155.53991 * 24 23 22 48 48 H 1.09005 * 110.62278 * 278.53994 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3333 1.1816 5 6 3.8003 2.6581 1.1812 6 1 3.0922 3.4867 1.1809 7 7 4.6450 2.7353 -0.0182 8 6 4.8687 4.1317 -0.4156 9 6 5.8614 4.1781 -1.5788 10 6 7.1881 3.5533 -1.1422 11 6 5.2946 3.3949 -2.7647 12 6 6.0905 5.6106 -1.9868 13 1 5.5787 6.4081 -1.4686 14 6 6.9525 5.9032 -3.0224 15 7 7.5752 4.9320 -3.6537 16 14 7.2358 7.6787 -3.5287 17 1 6.4223 8.5746 -2.6680 18 1 8.6740 8.0144 -3.3733 19 1 6.8360 7.8588 -4.9474 20 6 4.6800 2.7392 2.4305 21 1 5.1499 3.7209 2.4894 22 6 5.7615 1.6425 2.3819 23 6 5.5216 0.8157 3.6685 24 6 4.7299 1.8124 4.5530 25 8 3.8869 2.5055 3.6063 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1317 0.0894 30 1 2.6212 1.4026 -0.9314 31 1 3.7400 0.5067 1.0921 32 1 2.4772 1.2358 2.1130 33 1 4.2455 2.2030 -0.7766 34 1 3.9235 4.5767 -0.7266 35 1 5.2724 4.6896 0.4292 36 1 7.0221 2.5172 -0.8474 37 1 7.8956 3.5868 -1.9708 38 1 7.5919 4.1113 -0.2974 39 1 4.3496 3.8401 -3.0757 40 1 6.0018 3.4285 -3.5935 41 1 5.1287 2.3588 -2.4699 42 1 8.1820 5.1377 -4.3821 43 1 6.7566 2.0873 2.3942 44 1 5.6326 1.0184 1.4977 45 1 4.9266 -0.0723 3.4549 46 1 6.4669 0.5446 4.1386 47 1 4.1259 1.2785 5.2867 48 1 5.4072 2.5097 5.0462 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883229012.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:40 Heat of formation + Delta-G solvation = -43.151110 kcal Electronic energy + Delta-G solvation = -23577.253688 eV Core-core repulsion = 20438.974311 eV Total energy + Delta-G solvation = -3138.279377 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.68088 -37.25631 -35.75556 -33.99074 -31.84908 -31.53517 -29.54934 -28.92837 -25.53447 -25.25892 -25.12652 -23.44218 -22.76131 -21.47929 -19.83300 -19.34936 -18.42849 -16.38883 -15.96259 -15.89785 -15.44748 -15.34084 -14.64597 -14.52437 -14.12309 -13.53741 -13.43935 -13.35661 -12.70819 -12.68703 -12.47230 -11.96706 -11.69049 -11.61282 -11.49640 -11.23467 -11.11016 -11.00921 -10.95468 -10.79092 -10.74921 -10.53095 -10.41368 -10.31105 -10.12290 -10.03235 -9.50526 -9.36101 -9.26977 -9.02860 -8.59141 -8.27655 -7.69143 -5.89952 -4.00022 2.26194 3.30941 3.39470 3.43144 3.89962 4.45638 4.69810 4.81712 4.93180 4.97511 5.05675 5.09092 5.20234 5.29328 5.35722 5.40474 5.43231 5.59195 5.73526 5.77173 5.83172 5.88057 5.89808 6.00261 6.15066 6.22317 6.26623 6.31584 6.40165 6.47011 6.52995 6.61999 6.74776 6.76243 6.91390 7.06848 7.12228 7.18763 7.40244 7.49612 7.75729 7.77602 7.84782 7.98606 8.23442 8.36589 8.58038 9.01775 9.65056 11.10422 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016090 B = 0.004692 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.764588 B = 5966.683323 C = 7028.709525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.142 4.142 3 C -0.101 4.101 4 C -0.111 4.111 5 C 0.089 3.911 6 H 0.044 0.956 7 N -0.678 5.678 8 C 0.075 3.925 9 C 0.070 3.930 10 C -0.117 4.117 11 C -0.131 4.131 12 C -0.505 4.505 13 H 0.051 0.949 14 C 0.065 3.935 15 N -0.884 5.884 16 Si 0.887 3.113 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.286 1.286 20 C 0.089 3.911 21 H 0.065 0.935 22 C -0.133 4.133 23 C -0.159 4.159 24 C 0.048 3.952 25 O -0.379 6.379 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.107 0.893 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.341 0.659 34 H 0.013 0.987 35 H 0.054 0.946 36 H 0.021 0.979 37 H 0.072 0.928 38 H 0.016 0.984 39 H 0.018 0.982 40 H 0.082 0.918 41 H 0.011 0.989 42 H 0.257 0.743 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.085 0.915 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.511 -10.064 11.323 16.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.160 4.160 3 C -0.139 4.139 4 C -0.148 4.148 5 C -0.022 4.022 6 H 0.062 0.938 7 N -0.313 5.313 8 C -0.053 4.053 9 C 0.070 3.930 10 C -0.174 4.174 11 C -0.189 4.189 12 C -0.544 4.544 13 H 0.070 0.930 14 C -0.135 4.135 15 N -0.523 5.523 16 Si 0.715 3.285 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.212 1.212 20 C 0.031 3.969 21 H 0.083 0.917 22 C -0.170 4.170 23 C -0.196 4.196 24 C -0.029 4.029 25 O -0.298 6.298 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.125 0.875 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.163 0.837 34 H 0.032 0.968 35 H 0.073 0.927 36 H 0.040 0.960 37 H 0.091 0.909 38 H 0.035 0.965 39 H 0.037 0.963 40 H 0.101 0.899 41 H 0.030 0.970 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.109 0.891 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.104 0.896 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.021 -10.058 11.551 16.849 hybrid contribution -0.439 1.267 -0.701 1.513 sum -7.461 -8.791 10.850 15.832 Atomic orbital electron populations 1.23803 0.96023 1.01543 1.02741 1.22971 0.95937 0.98578 0.98529 1.20870 0.98385 0.95178 0.99436 1.21649 0.97442 0.97541 0.98210 1.21452 0.92697 0.96888 0.91139 0.93824 1.60462 1.49801 1.14550 1.06479 1.22204 0.98053 0.85942 0.99088 1.18071 0.91045 0.94687 0.89213 1.21615 0.99801 0.96252 0.99781 1.21816 0.99687 0.95173 1.02210 1.21161 1.25287 0.91780 1.16177 0.93042 1.24873 0.95740 0.96657 0.96275 1.69847 1.29073 1.30545 1.22876 0.86628 0.77866 0.85711 0.78292 1.19979 1.21146 1.21197 1.22636 0.90956 0.98360 0.84939 0.91724 1.22784 0.99076 0.97169 0.97997 1.23179 1.00569 0.99014 0.96868 1.23493 0.93414 0.93531 0.92466 1.88819 1.36846 1.78138 1.25968 0.88834 0.88758 0.87517 0.91720 0.90705 0.91249 0.90818 0.83705 0.96839 0.92723 0.96033 0.90886 0.96526 0.96324 0.89931 0.97048 0.93307 0.91053 0.89110 0.90986 0.90824 0.89639 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.09 14.32 29.01 0.42 -1.67 16 2 C -0.14 -1.56 9.52 -36.03 -0.34 -1.90 16 3 C -0.10 -1.24 5.49 -27.89 -0.15 -1.39 16 4 C -0.11 -1.41 4.36 -26.73 -0.12 -1.52 16 5 C 0.09 1.32 2.07 -67.71 -0.14 1.18 16 6 H 0.04 0.71 7.82 -51.93 -0.41 0.30 16 7 N -0.68 -11.41 4.59 -106.73 -0.49 -11.90 16 8 C 0.08 1.54 4.34 -3.83 -0.02 1.52 16 9 C 0.07 1.67 0.57 -155.66 -0.09 1.58 16 10 C -0.12 -2.78 8.09 37.16 0.30 -2.48 16 11 C -0.13 -3.05 7.91 37.16 0.29 -2.75 16 12 C -0.51 -13.51 8.01 -34.44 -0.28 -13.79 16 13 H 0.05 1.39 7.74 -52.48 -0.41 0.98 16 14 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 15 N -0.88 -24.35 9.35 55.43 0.52 -23.83 16 16 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 C 0.09 1.31 3.37 -26.16 -0.09 1.22 16 21 H 0.06 1.05 7.71 -51.93 -0.40 0.65 16 22 C -0.13 -1.75 5.88 -25.21 -0.15 -1.90 16 23 C -0.16 -1.68 7.15 -24.72 -0.18 -1.86 16 24 C 0.05 0.53 7.73 38.21 0.30 0.82 16 25 O -0.38 -5.40 10.19 -35.23 -0.36 -5.76 16 26 H 0.09 0.82 8.06 -52.49 -0.42 0.40 16 27 H 0.09 0.95 7.84 -52.49 -0.41 0.54 16 28 H 0.11 1.07 8.06 -52.49 -0.42 0.65 16 29 H 0.06 0.81 7.79 -51.93 -0.40 0.41 16 30 H 0.07 0.97 6.44 -51.93 -0.33 0.64 16 31 H 0.07 0.87 6.85 -51.92 -0.36 0.51 16 32 H 0.07 0.96 7.37 -51.93 -0.38 0.58 16 33 H 0.34 5.67 4.75 -39.29 -0.19 5.48 16 34 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.05 1.15 7.63 -51.93 -0.40 0.76 16 36 H 0.02 0.46 7.60 -51.93 -0.39 0.07 16 37 H 0.07 1.93 6.07 -51.93 -0.32 1.61 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 41 H 0.01 0.22 6.71 -51.93 -0.35 -0.13 16 42 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.09 1.27 6.18 -51.93 -0.32 0.94 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 363.09 15.07 5.47 5.47 Total: -1.00 -27.00 363.09 -8.95 -35.95 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -8.74 Total: 5.23 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: -0.33 Total: -21.26 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.03 Total: -35.73 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.36 Total: -5.76 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -27.00 -8.95 -35.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883229012.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.198 kcal (2) G-P(sol) polarization free energy of solvation -26.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds