Wall clock time and date at job start Tue Mar 31 2020 05:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 120.00466 * 2 1 4 4 C 1.52998 * 109.47013 * 124.99913 * 3 2 1 5 5 C 1.53002 * 109.47192 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.46833 * 305.00048 * 5 4 3 7 7 N 1.46903 * 109.46814 * 65.00128 * 5 4 3 8 8 C 1.46905 * 110.99824 * 206.03770 * 7 5 4 9 9 C 1.52992 * 109.47004 * 174.79904 * 8 7 5 10 10 C 1.52995 * 109.47555 * 300.00247 * 9 8 7 11 11 C 1.53000 * 109.47129 * 60.00387 * 9 8 7 12 12 C 1.50701 * 109.47013 * 180.02562 * 9 8 7 13 13 H 1.07998 * 120.00003 * 359.97438 * 12 9 8 14 14 C 1.37880 * 120.00010 * 180.02562 * 12 9 8 15 15 N 1.31515 * 119.99764 * 359.97438 * 14 12 9 16 16 Si 1.86797 * 120.00034 * 180.02562 * 14 12 9 17 17 H 1.48496 * 109.47249 * 59.99203 * 16 14 12 18 18 H 1.48495 * 109.47433 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46963 * 299.99767 * 16 14 12 20 20 C 1.53001 * 109.47269 * 184.99928 * 5 4 3 21 21 H 1.08991 * 110.41967 * 188.55438 * 20 5 4 22 22 C 1.54480 * 110.37202 * 66.23962 * 20 5 4 23 23 C 1.54503 * 104.18712 * 217.25742 * 22 20 5 24 24 C 1.54484 * 104.06131 * 359.93465 * 23 22 20 25 25 O 1.44429 * 104.80512 * 23.97830 * 24 23 22 26 26 H 1.08008 * 119.99483 * 359.97438 * 1 2 3 27 27 H 1.07994 * 120.00285 * 179.97438 * 1 2 3 28 28 H 1.08008 * 119.99483 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.46880 * 5.00340 * 3 2 1 30 30 H 1.08994 * 109.47168 * 244.99481 * 3 2 1 31 31 H 1.09004 * 109.47195 * 60.00049 * 4 3 2 32 32 H 1.09001 * 109.47005 * 300.00137 * 4 3 2 33 33 H 1.00903 * 111.00090 * 82.08345 * 7 5 4 34 34 H 1.08999 * 109.46879 * 294.80309 * 8 7 5 35 35 H 1.09001 * 109.46699 * 54.80298 * 8 7 5 36 36 H 1.08999 * 109.47680 * 59.99684 * 10 9 8 37 37 H 1.09001 * 109.47503 * 179.97438 * 10 9 8 38 38 H 1.09001 * 109.47236 * 300.00273 * 10 9 8 39 39 H 1.09000 * 109.47638 * 59.99652 * 11 9 8 40 40 H 1.09001 * 109.47163 * 179.97438 * 11 9 8 41 41 H 1.09005 * 109.47113 * 299.99248 * 11 9 8 42 42 H 0.97004 * 119.99512 * 180.02562 * 15 14 12 43 43 H 1.09001 * 110.50738 * 98.54683 * 22 20 5 44 44 H 1.09006 * 110.51100 * 335.97736 * 22 20 5 45 45 H 1.08997 * 110.51139 * 118.57745 * 23 22 20 46 46 H 1.08997 * 110.51647 * 241.15437 * 23 22 20 47 47 H 1.08999 * 110.37000 * 142.80771 * 24 23 22 48 48 H 1.08996 * 110.37515 * 265.14342 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 6 3.8007 2.6576 1.1813 6 1 4.2868 2.7960 0.2156 7 7 2.8648 3.7641 1.4215 8 6 3.3704 5.0163 0.8432 9 6 2.3148 6.1127 0.9987 10 6 1.0349 5.6953 0.2716 11 6 2.0123 6.3224 2.4838 12 6 2.8332 7.3970 0.4049 13 1 3.8174 7.4283 -0.0387 14 6 2.0515 8.5326 0.4288 15 7 0.8532 8.4946 0.9694 16 14 2.6938 10.1244 -0.3079 17 1 2.9861 9.9202 -1.7495 18 1 1.6693 11.1887 -0.1569 19 1 3.9368 10.5296 0.3964 20 6 4.8587 2.6355 2.2864 21 1 5.3100 3.6210 2.4005 22 6 5.9426 1.5807 1.9721 23 6 6.2971 0.9798 3.3507 24 6 5.3868 1.7431 4.3382 25 8 4.2759 2.2015 3.5371 26 1 -0.5400 0.9354 0.0004 27 1 -0.5400 -0.9352 -0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3587 2.1316 0.0896 30 1 2.6215 1.4024 -0.9313 31 1 3.7400 0.5063 1.0921 32 1 2.4773 1.2354 2.1130 33 1 2.6765 3.8710 2.4071 34 1 4.2822 5.3136 1.3612 35 1 3.5858 4.8668 -0.2148 36 1 0.6597 4.7662 0.7006 37 1 0.2827 6.4763 0.3828 38 1 1.2504 5.5459 -0.7864 39 1 2.9240 6.6198 3.0019 40 1 1.2605 7.1039 2.5946 41 1 1.6370 5.3934 2.9129 42 1 0.3031 9.2934 0.9859 43 1 6.8173 2.0533 1.5252 44 1 5.5458 0.8107 1.3104 45 1 6.0733 -0.0868 3.3714 46 1 7.3476 1.1532 3.5843 47 1 5.0369 1.0753 5.1254 48 1 5.9201 2.5910 4.7680 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883229013.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:41 Heat of formation + Delta-G solvation = -45.430958 kcal Electronic energy + Delta-G solvation = -23508.670493 eV Core-core repulsion = 20370.292254 eV Total energy + Delta-G solvation = -3138.378238 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.72955 -37.04729 -35.62563 -33.90238 -32.14504 -31.50590 -29.58986 -28.83871 -25.48138 -25.25047 -25.04527 -23.26452 -22.82056 -21.27638 -19.99307 -19.53410 -18.37473 -16.47280 -16.11179 -15.76397 -15.35179 -15.14663 -14.77592 -14.30618 -14.08137 -13.86984 -13.51569 -12.88313 -12.75032 -12.55838 -12.29715 -11.91801 -11.85841 -11.75746 -11.44466 -11.33894 -11.07586 -10.94804 -10.90026 -10.79593 -10.63300 -10.56765 -10.38792 -10.29197 -10.10567 -9.99780 -9.68959 -9.31743 -9.12011 -8.98877 -8.56661 -8.23501 -7.56558 -5.86137 -3.96566 2.46765 3.34938 3.39913 3.42235 3.88215 4.47336 4.52859 4.66311 4.87220 4.95792 4.97518 5.09765 5.25452 5.28619 5.38977 5.42559 5.53728 5.60282 5.62067 5.69578 5.75133 5.83615 5.89681 5.95909 6.02407 6.11866 6.24793 6.39622 6.47761 6.55946 6.64947 6.80296 6.84510 6.87377 6.97955 7.02776 7.17567 7.25882 7.46744 7.55674 7.81457 7.83319 7.90381 8.08991 8.29034 8.41710 8.61791 9.04942 9.68030 11.14088 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015082 B = 0.004824 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.016966 B = 5802.462058 C = 7013.082971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 C -0.090 4.090 4 C -0.092 4.092 5 C 0.094 3.906 6 H 0.082 0.918 7 N -0.674 5.674 8 C 0.075 3.925 9 C 0.071 3.929 10 C -0.117 4.117 11 C -0.131 4.131 12 C -0.507 4.507 13 H 0.050 0.950 14 C 0.066 3.934 15 N -0.884 5.884 16 Si 0.887 3.113 17 H -0.279 1.279 18 H -0.288 1.288 19 H -0.280 1.280 20 C 0.045 3.955 21 H 0.067 0.933 22 C -0.151 4.151 23 C -0.154 4.154 24 C 0.045 3.955 25 O -0.363 6.363 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.345 0.655 34 H 0.010 0.990 35 H 0.054 0.946 36 H 0.021 0.979 37 H 0.072 0.928 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.081 0.919 41 H 0.012 0.988 42 H 0.258 0.742 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.087 0.913 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.187 -16.268 2.718 17.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.167 4.167 3 C -0.128 4.128 4 C -0.130 4.130 5 C -0.017 4.017 6 H 0.100 0.900 7 N -0.305 5.305 8 C -0.054 4.054 9 C 0.071 3.929 10 C -0.175 4.175 11 C -0.188 4.188 12 C -0.545 4.545 13 H 0.068 0.932 14 C -0.135 4.135 15 N -0.523 5.523 16 Si 0.716 3.284 17 H -0.205 1.205 18 H -0.214 1.214 19 H -0.206 1.206 20 C -0.015 4.015 21 H 0.085 0.915 22 C -0.189 4.189 23 C -0.191 4.191 24 C -0.033 4.033 25 O -0.282 6.282 26 H 0.117 0.883 27 H 0.107 0.893 28 H 0.117 0.883 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.165 0.835 34 H 0.028 0.972 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.091 0.909 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.100 0.900 41 H 0.031 0.969 42 H 0.068 0.932 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.091 0.909 46 H 0.090 0.910 47 H 0.106 0.894 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.384 -16.264 2.261 17.618 hybrid contribution 1.513 1.120 0.217 1.895 sum 7.897 -15.144 2.478 17.258 Atomic orbital electron populations 1.23843 0.96141 1.01554 1.02297 1.23049 0.96068 0.98633 0.98950 1.20721 0.98928 0.95217 0.97894 1.21369 0.97446 0.95203 0.98964 1.21733 0.90844 0.93479 0.95600 0.90016 1.60638 1.43727 1.04856 1.21308 1.22191 0.96920 0.88925 0.97323 1.18050 0.91419 0.90724 0.92745 1.21616 1.00113 0.98770 0.96981 1.21807 1.00379 0.99362 0.97288 1.21083 1.01343 0.94318 1.37800 0.93217 1.24876 0.94897 0.98438 0.95314 1.69834 1.09202 1.28388 1.44843 0.86748 0.78454 0.83544 0.79703 1.20458 1.21391 1.20553 1.23924 0.94370 0.96913 0.86285 0.91481 1.23020 0.99098 0.99184 0.97640 1.22912 1.00177 1.00747 0.95307 1.23348 0.88121 0.97399 0.94391 1.89180 1.29197 1.83153 1.26648 0.88307 0.89261 0.88349 0.89490 0.92005 0.92785 0.91222 0.83514 0.97212 0.92769 0.96004 0.90914 0.96491 0.96456 0.90024 0.96860 0.93202 0.90936 0.90198 0.90941 0.90976 0.89429 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.42 14.32 29.01 0.42 -2.01 16 2 C -0.15 -1.81 9.52 -36.03 -0.34 -2.16 16 3 C -0.09 -1.22 5.54 -27.88 -0.15 -1.38 16 4 C -0.09 -1.22 4.41 -26.73 -0.12 -1.33 16 5 C 0.09 1.37 1.90 -67.71 -0.13 1.24 16 6 H 0.08 1.18 7.70 -51.93 -0.40 0.78 16 7 N -0.67 -11.96 4.84 -106.72 -0.52 -12.48 16 8 C 0.07 1.55 4.41 -3.83 -0.02 1.53 16 9 C 0.07 1.73 0.57 -155.67 -0.09 1.64 16 10 C -0.12 -2.87 8.09 37.15 0.30 -2.57 16 11 C -0.13 -3.16 7.92 37.16 0.29 -2.86 16 12 C -0.51 -13.70 8.01 -34.44 -0.28 -13.97 16 13 H 0.05 1.34 7.74 -52.49 -0.41 0.93 16 14 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 15 N -0.88 -24.71 9.35 55.43 0.52 -24.19 16 16 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 C 0.04 0.60 3.00 -25.95 -0.08 0.52 16 21 H 0.07 1.00 7.52 -51.93 -0.39 0.61 16 22 C -0.15 -1.59 6.45 -25.17 -0.16 -1.75 16 23 C -0.15 -1.42 7.09 -25.16 -0.18 -1.59 16 24 C 0.04 0.48 7.64 37.94 0.29 0.77 16 25 O -0.36 -5.17 10.10 -35.23 -0.36 -5.53 16 26 H 0.10 1.26 7.84 -52.48 -0.41 0.85 16 27 H 0.09 0.92 8.06 -52.49 -0.42 0.49 16 28 H 0.10 1.05 8.06 -52.48 -0.42 0.63 16 29 H 0.09 1.39 7.40 -51.93 -0.38 1.00 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.63 6.34 -51.93 -0.33 0.30 16 32 H 0.07 1.03 7.68 -51.93 -0.40 0.63 16 33 H 0.34 6.48 6.46 -39.29 -0.25 6.22 16 34 H 0.01 0.20 7.55 -51.93 -0.39 -0.19 16 35 H 0.05 1.13 7.92 -51.93 -0.41 0.72 16 36 H 0.02 0.49 7.60 -51.93 -0.39 0.09 16 37 H 0.07 1.96 6.07 -51.93 -0.32 1.65 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 41 H 0.01 0.28 6.70 -51.93 -0.35 -0.07 16 42 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 0.80 6.17 -51.93 -0.32 0.48 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 365.48 15.07 5.51 5.51 Total: -1.00 -27.48 365.48 -9.04 -36.52 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -8.83 Total: 6.15 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: -0.34 Total: -22.23 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.00 Total: -36.66 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.36 Total: -5.53 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -27.48 -9.04 -36.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883229013.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.911 kcal (2) G-P(sol) polarization free energy of solvation -27.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds