Wall clock time and date at job start Tue Mar 31 2020 05:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00420 * 2 1 4 4 C 1.53002 * 109.47579 * 125.00085 * 3 2 1 5 5 C 1.52995 * 109.47485 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47232 * 54.99452 * 5 4 3 7 7 N 1.46902 * 109.47033 * 294.99974 * 5 4 3 8 8 C 1.46902 * 110.99696 * 294.38925 * 7 5 4 9 9 C 1.53006 * 109.46966 * 174.34172 * 8 7 5 10 10 C 1.53001 * 109.46931 * 300.00044 * 9 8 7 11 11 C 1.52999 * 109.46995 * 60.00204 * 9 8 7 12 12 C 1.50697 * 109.46966 * 179.97438 * 9 8 7 13 13 H 1.08008 * 120.00195 * 0.02562 * 12 9 8 14 14 C 1.37878 * 119.99965 * 179.97438 * 12 9 8 15 15 N 1.31512 * 120.00069 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 120.00069 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47310 * 59.99861 * 16 14 12 18 18 H 1.48502 * 109.47328 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47216 * 300.00061 * 16 14 12 20 20 C 1.52995 * 109.47248 * 174.99793 * 5 4 3 21 21 H 1.08994 * 109.87181 * 58.27476 * 20 5 4 22 22 C 1.54103 * 109.87819 * 179.28041 * 20 5 4 23 23 C 1.54812 * 104.18652 * 121.45305 * 22 20 5 24 24 C 1.54994 * 102.09088 * 20.88213 * 23 22 20 25 25 O 1.43744 * 109.87948 * 297.11136 * 20 5 4 26 26 H 1.08000 * 119.99313 * 0.02562 * 1 2 3 27 27 H 1.07991 * 120.00588 * 180.02562 * 1 2 3 28 28 H 1.07999 * 119.99803 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.46996 * 4.99581 * 3 2 1 30 30 H 1.09005 * 109.47173 * 245.00011 * 3 2 1 31 31 H 1.08997 * 109.46951 * 59.99385 * 4 3 2 32 32 H 1.09007 * 109.46531 * 299.99683 * 4 3 2 33 33 H 1.00898 * 111.00149 * 170.43668 * 7 5 4 34 34 H 1.08997 * 109.47072 * 294.34057 * 8 7 5 35 35 H 1.09005 * 109.47102 * 54.34651 * 8 7 5 36 36 H 1.09000 * 109.47087 * 60.00757 * 10 9 8 37 37 H 1.09006 * 109.46381 * 179.97438 * 10 9 8 38 38 H 1.08997 * 109.47263 * 299.99734 * 10 9 8 39 39 H 1.09005 * 109.46845 * 59.99883 * 11 9 8 40 40 H 1.08996 * 109.46811 * 179.97438 * 11 9 8 41 41 H 1.09002 * 109.46990 * 299.99878 * 11 9 8 42 42 H 0.97000 * 120.00248 * 179.97438 * 15 14 12 43 43 H 1.08999 * 110.49221 * 240.12945 * 22 20 5 44 44 H 1.09002 * 110.48812 * 2.64785 * 22 20 5 45 45 H 1.09004 * 110.90607 * 139.07884 * 23 22 20 46 46 H 1.08998 * 110.90763 * 262.64614 * 23 22 20 47 47 H 1.09004 * 110.62152 * 81.48069 * 24 23 22 48 48 H 1.09009 * 110.61327 * 204.47383 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0352 1.3330 1.1816 5 6 3.7998 2.6582 1.1819 6 1 3.0912 3.4865 1.1821 7 7 4.6443 2.7366 -0.0175 8 6 5.6988 1.7143 0.0135 9 6 6.4669 1.7337 -1.3097 10 6 5.5047 1.4393 -2.4623 11 6 7.0989 3.1123 -1.5123 12 6 7.5490 0.6854 -1.2777 13 1 7.6760 0.0668 -0.4014 14 6 8.3764 0.5152 -2.3674 15 7 8.2216 1.2680 -3.4345 16 14 9.7174 -0.7847 -2.3280 17 1 9.1041 -2.1227 -2.1307 18 1 10.4630 -0.7658 -3.6121 19 1 10.6515 -0.4986 -1.2095 20 6 4.6793 2.7392 2.4312 21 1 5.3702 1.8965 2.4531 22 6 5.4678 4.0633 2.4319 23 6 5.0407 4.7585 3.7476 24 6 4.5119 3.5677 4.5871 25 8 3.8564 2.7313 3.6097 26 1 -0.5399 0.9354 -0.0004 27 1 -0.5401 -0.9352 0.0004 28 1 1.8499 -0.9353 0.0004 29 1 1.3587 2.1316 0.0895 30 1 2.6214 1.4025 -0.9314 31 1 3.7400 0.5064 1.0921 32 1 2.4773 1.2356 2.1130 33 1 5.0383 3.6595 -0.1226 34 1 6.3842 1.9241 0.8346 35 1 5.2485 0.7321 0.1578 36 1 4.7224 2.1979 -2.4853 37 1 6.0520 1.4536 -3.4049 38 1 5.0546 0.4572 -2.3179 39 1 7.7843 3.3219 -0.6910 40 1 7.6464 3.1259 -2.4546 41 1 6.3164 3.8708 -1.5352 42 1 8.8039 1.1486 -4.2010 43 1 6.5403 3.8687 2.4339 44 1 5.1930 4.6714 1.5701 45 1 5.8953 5.2284 4.2343 46 1 4.2509 5.4869 3.5640 47 1 5.3371 3.0335 5.0580 48 1 3.7994 3.9129 5.3364 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883229014.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:43 Heat of formation + Delta-G solvation = -42.475742 kcal Electronic energy + Delta-G solvation = -23744.083715 eV Core-core repulsion = 20605.833625 eV Total energy + Delta-G solvation = -3138.250091 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.81860 -37.31443 -35.51816 -34.03800 -32.01491 -31.41588 -29.50931 -28.69543 -25.55762 -25.33802 -25.13832 -23.95831 -22.48564 -21.14696 -19.91198 -19.43884 -18.17608 -16.68880 -16.15789 -16.01579 -15.48983 -14.93862 -14.72940 -14.42190 -13.92532 -13.64304 -13.37942 -13.13470 -12.86466 -12.55191 -12.35190 -12.09213 -11.85720 -11.64897 -11.38262 -11.23883 -11.10374 -11.04415 -10.97922 -10.72797 -10.65697 -10.59352 -10.35361 -10.23352 -10.03078 -10.01876 -9.64669 -9.35959 -9.07929 -9.05201 -8.60643 -8.27164 -7.67069 -5.89998 -4.00327 2.50583 3.32666 3.37721 3.40364 3.89929 4.44451 4.56820 4.68465 4.86271 4.90037 5.01458 5.20314 5.27111 5.35089 5.35575 5.46769 5.54193 5.62132 5.71628 5.73996 5.83872 5.90649 5.94829 6.00845 6.09856 6.17115 6.25747 6.37892 6.42395 6.56835 6.64398 6.76661 6.86072 6.91884 6.96813 7.04080 7.10922 7.18825 7.40778 7.50126 7.74286 7.77153 7.84648 7.95934 8.23200 8.36728 8.57436 9.01092 9.64646 11.10258 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.012946 B = 0.005510 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.333751 B = 5080.571105 C = 6418.318290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.137 4.137 3 C -0.088 4.088 4 C -0.100 4.100 5 C 0.092 3.908 6 H 0.077 0.923 7 N -0.668 5.668 8 C 0.069 3.931 9 C 0.071 3.929 10 C -0.118 4.118 11 C -0.131 4.131 12 C -0.506 4.506 13 H 0.050 0.950 14 C 0.066 3.934 15 N -0.884 5.884 16 Si 0.886 3.114 17 H -0.279 1.279 18 H -0.288 1.288 19 H -0.280 1.280 20 C 0.044 3.956 21 H 0.072 0.928 22 C -0.153 4.153 23 C -0.153 4.153 24 C 0.046 3.954 25 O -0.372 6.372 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.336 0.664 34 H 0.015 0.985 35 H 0.061 0.939 36 H 0.021 0.979 37 H 0.072 0.928 38 H 0.017 0.983 39 H 0.017 0.983 40 H 0.082 0.918 41 H 0.011 0.989 42 H 0.258 0.742 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.056 0.944 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.196 5.102 11.100 15.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.155 4.155 3 C -0.125 4.125 4 C -0.137 4.137 5 C -0.019 4.019 6 H 0.095 0.905 7 N -0.300 5.300 8 C -0.059 4.059 9 C 0.071 3.929 10 C -0.176 4.176 11 C -0.189 4.189 12 C -0.545 4.545 13 H 0.068 0.932 14 C -0.135 4.135 15 N -0.523 5.523 16 Si 0.715 3.285 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.205 1.205 20 C -0.016 4.016 21 H 0.090 0.910 22 C -0.191 4.191 23 C -0.191 4.191 24 C -0.031 4.031 25 O -0.291 6.291 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.123 0.877 29 H 0.076 0.924 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.156 0.844 34 H 0.033 0.967 35 H 0.079 0.921 36 H 0.040 0.960 37 H 0.091 0.909 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.100 0.900 41 H 0.030 0.970 42 H 0.068 0.932 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.075 0.925 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.736 4.632 10.543 15.080 hybrid contribution 1.733 -0.319 0.747 1.914 sum -8.003 4.313 11.290 14.495 Atomic orbital electron populations 1.23718 0.96014 1.01174 1.04261 1.23136 0.95921 0.99244 0.97199 1.20698 0.97498 0.93800 1.00508 1.21488 0.97645 0.96874 0.97734 1.21700 0.94718 0.98793 0.86712 0.90474 1.60866 1.25349 1.08766 1.35014 1.22252 0.90637 0.93790 0.99210 1.18057 0.91998 0.93390 0.89468 1.21629 0.97072 0.96975 1.01897 1.21819 0.98190 0.96365 1.02486 1.21071 1.14860 1.18034 1.00561 0.93217 1.24866 0.97222 0.95852 0.95532 1.69821 1.38612 1.39045 1.04810 0.86761 0.82223 0.82481 0.77067 1.20424 1.21381 1.20545 1.23699 0.93326 0.97242 0.87326 0.91001 1.22984 1.01064 0.96632 0.98371 1.23100 1.01417 0.98436 0.96116 1.23502 0.97026 0.90324 0.92286 1.88866 1.46806 1.69508 1.23871 0.88979 0.89174 0.87733 0.92433 0.88999 0.91614 0.91850 0.84431 0.96727 0.92079 0.96037 0.90906 0.96395 0.96432 0.89975 0.97045 0.93181 0.90594 0.90376 0.90552 0.90702 0.92546 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.60 14.32 29.02 0.42 -2.18 16 2 C -0.14 -1.85 9.52 -36.03 -0.34 -2.19 16 3 C -0.09 -1.26 5.54 -27.88 -0.15 -1.41 16 4 C -0.10 -1.47 4.53 -26.73 -0.12 -1.59 16 5 C 0.09 1.34 2.19 -67.72 -0.15 1.19 16 6 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 7 N -0.67 -11.04 4.88 -106.72 -0.52 -11.56 16 8 C 0.07 1.36 3.68 -3.82 -0.01 1.35 16 9 C 0.07 1.67 0.57 -155.66 -0.09 1.58 16 10 C -0.12 -2.80 8.09 37.16 0.30 -2.50 16 11 C -0.13 -2.99 7.91 37.16 0.29 -2.70 16 12 C -0.51 -13.38 8.01 -34.44 -0.28 -13.66 16 13 H 0.05 1.32 7.74 -52.48 -0.41 0.91 16 14 C 0.07 1.78 5.15 -17.82 -0.09 1.68 16 15 N -0.88 -24.23 9.35 55.43 0.52 -23.72 16 16 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 C 0.04 0.62 2.38 -26.16 -0.06 0.56 16 21 H 0.07 1.15 6.59 -51.93 -0.34 0.81 16 22 C -0.15 -1.92 6.11 -25.20 -0.15 -2.07 16 23 C -0.15 -1.57 7.15 -24.72 -0.18 -1.75 16 24 C 0.05 0.50 7.72 38.21 0.29 0.79 16 25 O -0.37 -5.27 10.57 -35.23 -0.37 -5.65 16 26 H 0.09 1.04 7.84 -52.49 -0.41 0.63 16 27 H 0.09 0.97 8.06 -52.49 -0.42 0.54 16 28 H 0.10 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.06 0.78 7.79 -51.93 -0.40 0.37 16 30 H 0.09 1.51 7.75 -51.93 -0.40 1.11 16 31 H 0.07 1.06 6.22 -51.93 -0.32 0.74 16 32 H 0.06 0.93 7.64 -51.93 -0.40 0.53 16 33 H 0.34 5.45 5.64 -39.29 -0.22 5.23 16 34 H 0.01 0.29 6.49 -51.93 -0.34 -0.05 16 35 H 0.06 1.26 6.12 -51.93 -0.32 0.94 16 36 H 0.02 0.46 7.60 -51.93 -0.39 0.07 16 37 H 0.07 1.92 6.07 -51.93 -0.32 1.60 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 41 H 0.01 0.22 6.71 -51.93 -0.35 -0.13 16 42 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 43 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.08 0.97 6.57 -51.93 -0.34 0.63 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.09 0.80 8.14 -51.92 -0.42 0.37 16 LS Contribution 360.96 15.07 5.44 5.44 Total: -1.00 -26.75 360.96 -8.92 -35.68 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -8.64 Total: 6.72 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -0.33 Total: -22.90 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.00 Total: -35.27 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: -0.37 Total: -5.65 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -26.75 -8.92 -35.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883229014.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.800 kcal (2) G-P(sol) polarization free energy of solvation -26.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds