Wall clock time and date at job start Tue Mar 31 2020 05:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 120.00279 * 2 1 4 4 C 1.53001 * 109.47380 * 125.00322 * 3 2 1 5 5 C 1.52997 * 109.47064 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47577 * 304.99951 * 5 4 3 7 7 N 1.46903 * 109.47224 * 64.99929 * 5 4 3 8 8 C 1.46902 * 111.00087 * 207.87399 * 7 5 4 9 9 C 1.53001 * 109.47192 * 186.03468 * 8 7 5 10 10 C 1.52997 * 109.47283 * 300.00278 * 9 8 7 11 11 C 1.53004 * 109.46865 * 60.00088 * 9 8 7 12 12 C 1.50699 * 109.46957 * 179.97438 * 9 8 7 13 13 H 1.07996 * 120.00056 * 0.02562 * 12 9 8 14 14 C 1.37877 * 119.99945 * 179.97438 * 12 9 8 15 15 N 1.31522 * 119.99802 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 120.00135 * 180.02562 * 14 12 9 17 17 H 1.48496 * 109.47162 * 60.00317 * 16 14 12 18 18 H 1.48497 * 109.46963 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47226 * 300.00270 * 16 14 12 20 20 C 1.53006 * 109.47166 * 184.99882 * 5 4 3 21 21 H 1.08991 * 110.27323 * 176.53584 * 20 5 4 22 22 C 1.54951 * 110.30523 * 298.73230 * 20 5 4 23 23 C 1.55308 * 100.94042 * 155.35736 * 22 20 5 24 24 C 1.54390 * 102.25260 * 325.86772 * 23 22 20 25 25 O 1.43244 * 107.58674 * 21.35415 * 24 23 22 26 26 H 1.08004 * 119.99977 * 180.02562 * 1 2 3 27 27 H 1.07997 * 119.99744 * 359.97438 * 1 2 3 28 28 H 1.08010 * 120.00125 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47187 * 245.00662 * 3 2 1 30 30 H 1.09003 * 109.46860 * 4.99802 * 3 2 1 31 31 H 1.09004 * 109.46648 * 299.99878 * 4 3 2 32 32 H 1.08998 * 109.47127 * 60.00082 * 4 3 2 33 33 H 1.00903 * 110.99979 * 331.82927 * 7 5 4 34 34 H 1.08999 * 109.47209 * 306.03976 * 8 7 5 35 35 H 1.09004 * 109.46821 * 66.03377 * 8 7 5 36 36 H 1.09000 * 109.47384 * 59.99468 * 10 9 8 37 37 H 1.08997 * 109.47215 * 180.02562 * 10 9 8 38 38 H 1.09004 * 109.46891 * 300.00190 * 10 9 8 39 39 H 1.08999 * 109.46864 * 59.99904 * 11 9 8 40 40 H 1.08997 * 109.46737 * 179.97438 * 11 9 8 41 41 H 1.08992 * 109.47098 * 300.00021 * 11 9 8 42 42 H 0.96999 * 119.99809 * 179.97438 * 15 14 12 43 43 H 1.08998 * 111.12487 * 273.27537 * 22 20 5 44 44 H 1.08994 * 111.12732 * 37.43953 * 22 20 5 45 45 H 1.08995 * 110.85224 * 207.67319 * 23 22 20 46 46 H 1.09001 * 111.01981 * 84.13003 * 23 22 20 47 47 H 1.08997 * 109.82672 * 261.84287 * 24 23 22 48 48 H 1.08995 * 109.90463 * 140.90690 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7997 2.6583 1.1819 6 1 4.2857 2.7977 0.2162 7 7 2.8630 3.7640 1.4227 8 6 3.3467 5.0072 0.8076 9 6 2.4272 6.1639 1.2045 10 6 1.0053 5.8746 0.7196 11 6 2.4260 6.3151 2.7270 12 6 2.9238 7.4394 0.5739 13 1 3.8066 7.4262 -0.0480 14 6 2.2505 8.6230 0.7902 15 7 1.1751 8.6389 1.5472 16 14 2.8657 10.2039 0.0081 17 1 2.8673 10.0571 -1.4696 18 1 1.9733 11.3266 0.3934 19 1 4.2456 10.4849 0.4791 20 6 4.8578 2.6364 2.2869 21 1 5.4513 3.5501 2.2595 22 6 4.1847 2.4709 3.6727 23 6 5.3450 1.8411 4.4906 24 6 6.0585 0.9728 3.4321 25 8 5.7060 1.4862 2.1421 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5399 0.9353 0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 2.6212 1.4026 -0.9314 30 1 1.3586 2.1316 0.0895 31 1 2.4773 1.2355 2.1130 32 1 3.7400 0.5065 1.0920 33 1 1.9381 3.5329 1.0920 34 1 4.3597 5.2133 1.1530 35 1 3.3476 4.8994 -0.2771 36 1 0.6463 4.9521 1.1760 37 1 0.3504 6.6989 1.0020 38 1 1.0061 5.7669 -0.3651 39 1 3.4391 6.5212 3.0724 40 1 1.7714 7.1394 3.0097 41 1 2.0672 5.3927 3.1834 42 1 0.7017 9.4717 1.6997 43 1 3.8923 3.4365 4.0852 44 1 3.3315 1.7951 3.6168 45 1 4.9579 1.2242 5.3015 46 1 6.0141 2.6104 4.8762 47 1 5.7295 -0.0626 3.5205 48 1 7.1380 1.0308 3.5708 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883229015.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:45 Heat of formation + Delta-G solvation = -43.765594 kcal Electronic energy + Delta-G solvation = -23572.136764 eV Core-core repulsion = 20433.830741 eV Total energy + Delta-G solvation = -3138.306023 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.65131 -37.29195 -35.75643 -33.97006 -31.88814 -31.58008 -29.56386 -28.97723 -25.53609 -25.28596 -25.12972 -23.40717 -22.61544 -21.59593 -19.78755 -19.39906 -18.42208 -16.62707 -15.92080 -15.84027 -15.45533 -15.20144 -14.69094 -14.41110 -14.05745 -13.90026 -13.32254 -13.12056 -12.87454 -12.82514 -12.29652 -12.05157 -11.73001 -11.59966 -11.48253 -11.27569 -11.17696 -11.04351 -10.95844 -10.80426 -10.70822 -10.59913 -10.46518 -10.22449 -10.10374 -10.02787 -9.41854 -9.35309 -9.23521 -9.02516 -8.60531 -8.26794 -7.68237 -5.89452 -3.99713 2.27867 3.33698 3.38457 3.41316 3.85703 4.45817 4.65458 4.79622 4.88438 4.95351 4.99685 5.12689 5.23327 5.29651 5.35970 5.40141 5.43410 5.60136 5.73328 5.78780 5.83774 5.87539 5.92959 6.01648 6.06787 6.21363 6.29633 6.32513 6.35876 6.44293 6.52593 6.63353 6.74873 6.78399 6.91658 7.09815 7.18781 7.19150 7.40193 7.49826 7.76113 7.77588 7.84900 7.98930 8.23585 8.36722 8.58163 9.01676 9.65207 11.10851 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015166 B = 0.004857 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.770371 B = 5763.084995 C = 6946.407840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.147 4.147 3 C -0.101 4.101 4 C -0.113 4.113 5 C 0.089 3.911 6 H 0.045 0.955 7 N -0.677 5.677 8 C 0.075 3.925 9 C 0.071 3.929 10 C -0.131 4.131 11 C -0.117 4.117 12 C -0.507 4.507 13 H 0.050 0.950 14 C 0.066 3.934 15 N -0.885 5.885 16 Si 0.887 3.113 17 H -0.279 1.279 18 H -0.288 1.288 19 H -0.279 1.279 20 C 0.094 3.906 21 H 0.069 0.931 22 C -0.132 4.132 23 C -0.162 4.162 24 C 0.054 3.946 25 O -0.385 6.385 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.342 0.658 34 H 0.054 0.946 35 H 0.013 0.987 36 H 0.011 0.989 37 H 0.082 0.918 38 H 0.017 0.983 39 H 0.016 0.984 40 H 0.073 0.927 41 H 0.021 0.979 42 H 0.258 0.742 43 H 0.090 0.910 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.062 0.938 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.221 -16.033 2.606 16.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.165 4.165 3 C -0.138 4.138 4 C -0.151 4.151 5 C -0.021 4.021 6 H 0.063 0.937 7 N -0.313 5.313 8 C -0.053 4.053 9 C 0.071 3.929 10 C -0.189 4.189 11 C -0.175 4.175 12 C -0.546 4.546 13 H 0.069 0.931 14 C -0.135 4.135 15 N -0.524 5.524 16 Si 0.716 3.284 17 H -0.205 1.205 18 H -0.214 1.214 19 H -0.204 1.204 20 C 0.036 3.964 21 H 0.087 0.913 22 C -0.169 4.169 23 C -0.199 4.199 24 C -0.023 4.023 25 O -0.305 6.305 26 H 0.111 0.889 27 H 0.116 0.884 28 H 0.123 0.877 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.163 0.837 34 H 0.073 0.927 35 H 0.032 0.968 36 H 0.029 0.971 37 H 0.101 0.899 38 H 0.037 0.963 39 H 0.035 0.965 40 H 0.091 0.909 41 H 0.040 0.960 42 H 0.068 0.932 43 H 0.109 0.891 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.091 0.909 47 H 0.081 0.919 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.408 -15.836 3.095 16.492 hybrid contribution 0.214 0.829 -1.192 1.468 sum 3.622 -15.007 1.903 15.554 Atomic orbital electron populations 1.23862 0.96028 1.01769 1.01985 1.22942 0.95951 0.98421 0.99212 1.20860 0.98495 0.95362 0.99075 1.21693 0.97724 0.97498 0.98140 1.21438 0.93159 0.91412 0.96126 0.93720 1.60447 1.04654 1.02469 1.63694 1.22216 0.99416 0.89277 0.94416 1.18055 0.90904 0.90500 0.93461 1.21814 1.00622 0.99225 0.97210 1.21622 0.99210 0.99637 0.97037 1.21085 1.11263 0.92391 1.29823 0.93148 1.24872 0.94940 0.98555 0.95130 1.69828 1.18085 1.26401 1.38040 0.86741 0.78674 0.83301 0.79709 1.20497 1.21390 1.20444 1.22874 0.90242 0.88129 0.95175 0.91311 1.23114 0.97228 1.02449 0.94139 1.23173 0.98460 0.99709 0.98593 1.23025 0.98763 0.97345 0.83127 1.88337 1.68580 1.46147 1.27397 0.88853 0.88404 0.87718 0.91218 0.91222 0.91140 0.90864 0.83693 0.92710 0.96839 0.97053 0.89936 0.96340 0.96514 0.90868 0.96037 0.93188 0.89142 0.90381 0.90578 0.90873 0.91949 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.10 14.32 29.02 0.42 -1.68 16 2 C -0.15 -1.61 9.52 -36.03 -0.34 -1.96 16 3 C -0.10 -1.23 5.50 -27.88 -0.15 -1.38 16 4 C -0.11 -1.43 4.30 -26.73 -0.11 -1.55 16 5 C 0.09 1.33 2.15 -67.71 -0.15 1.18 16 6 H 0.04 0.72 7.81 -51.93 -0.41 0.32 16 7 N -0.68 -11.44 5.03 -106.72 -0.54 -11.98 16 8 C 0.08 1.53 4.35 -3.82 -0.02 1.51 16 9 C 0.07 1.69 0.57 -155.66 -0.09 1.60 16 10 C -0.13 -3.04 7.92 37.16 0.29 -2.75 16 11 C -0.12 -2.79 8.09 37.16 0.30 -2.49 16 12 C -0.51 -13.54 8.01 -34.44 -0.28 -13.82 16 13 H 0.05 1.35 7.74 -52.49 -0.41 0.95 16 14 C 0.07 1.78 5.15 -17.82 -0.09 1.68 16 15 N -0.88 -24.34 9.35 55.43 0.52 -23.82 16 16 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C 0.09 1.37 3.39 -25.70 -0.09 1.28 16 21 H 0.07 1.12 7.69 -51.93 -0.40 0.72 16 22 C -0.13 -1.73 6.08 -24.48 -0.15 -1.88 16 23 C -0.16 -1.75 7.02 -24.78 -0.17 -1.92 16 24 C 0.05 0.61 7.80 37.89 0.30 0.91 16 25 O -0.39 -5.52 10.10 -35.23 -0.36 -5.88 16 26 H 0.09 0.84 8.06 -52.48 -0.42 0.41 16 27 H 0.10 1.05 7.84 -52.49 -0.41 0.64 16 28 H 0.10 1.03 8.06 -52.48 -0.42 0.61 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.91 6.09 -51.93 -0.32 0.59 16 31 H 0.07 0.90 6.41 -51.93 -0.33 0.57 16 32 H 0.07 0.93 7.42 -51.93 -0.39 0.54 16 33 H 0.34 5.72 4.77 -39.29 -0.19 5.53 16 34 H 0.05 1.15 7.62 -51.93 -0.40 0.76 16 35 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.01 0.22 6.72 -51.93 -0.35 -0.13 16 37 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 1.93 6.07 -51.93 -0.32 1.61 16 41 H 0.02 0.46 7.60 -51.93 -0.39 0.06 16 42 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 43 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.08 1.00 6.05 -51.93 -0.31 0.68 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 363.11 15.07 5.47 5.47 Total: -1.00 -26.86 363.11 -8.97 -35.83 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -8.71 Total: 5.53 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: -0.33 Total: -21.25 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: -0.02 Total: -35.80 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.36 Total: -5.88 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -26.86 -8.97 -35.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883229015.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.934 kcal (2) G-P(sol) polarization free energy of solvation -26.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds