Wall clock time and date at job start Tue Mar 31 2020 06:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.47176 * 2 1 4 4 H 1.09005 * 109.47102 * 185.14889 * 3 2 1 5 5 C 1.50700 * 109.47462 * 305.14584 * 3 2 1 6 6 H 1.08005 * 120.00147 * 119.99724 * 5 3 2 7 7 C 1.37874 * 120.00079 * 300.00294 * 5 3 2 8 8 N 1.31509 * 120.00105 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00190 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47023 * 60.00038 * 9 7 5 11 11 H 1.48493 * 109.47430 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47198 * 300.00132 * 9 7 5 13 13 N 1.46899 * 109.47408 * 65.14694 * 3 2 1 14 14 C 1.46908 * 110.99830 * 85.58420 * 13 3 2 15 15 H 1.09002 * 109.61736 * 326.40348 * 14 13 3 16 16 C 1.53174 * 109.54229 * 86.62769 * 14 13 3 17 17 C 1.53098 * 109.15645 * 176.86565 * 16 14 13 18 18 O 1.42897 * 109.42472 * 302.39112 * 17 16 14 19 19 C 1.42882 * 114.11627 * 61.11843 * 18 17 16 20 20 C 1.52988 * 109.52341 * 178.95276 * 19 18 17 21 21 C 1.52992 * 109.50519 * 299.77949 * 20 19 18 22 22 C 1.53003 * 109.47138 * 300.02360 * 21 20 19 23 23 C 1.52994 * 109.44751 * 60.04194 * 22 21 20 24 24 C 1.52993 * 109.52203 * 58.85248 * 19 18 17 25 25 C 1.53090 * 109.43141 * 298.89819 * 19 18 17 26 26 H 1.09000 * 109.46864 * 294.61883 * 1 2 3 27 27 H 1.09001 * 109.46666 * 54.61033 * 1 2 3 28 28 H 1.09000 * 109.47189 * 174.61285 * 1 2 3 29 29 H 1.09003 * 109.46667 * 240.00270 * 2 1 3 30 30 H 1.08995 * 109.46743 * 120.00331 * 2 1 3 31 31 H 0.97003 * 120.00196 * 179.97438 * 8 7 5 32 32 H 1.00896 * 110.99923 * 321.63696 * 13 3 2 33 33 H 1.09005 * 109.52726 * 56.96223 * 16 14 13 34 34 H 1.09001 * 109.52657 * 296.76667 * 16 14 13 35 35 H 1.08997 * 109.47965 * 62.37780 * 17 16 14 36 36 H 1.09002 * 109.47903 * 182.40457 * 17 16 14 37 37 H 1.09000 * 109.46168 * 59.79341 * 20 19 18 38 38 H 1.09003 * 109.46269 * 179.76894 * 20 19 18 39 39 H 1.09001 * 109.46728 * 180.02562 * 21 20 19 40 40 H 1.09007 * 109.46792 * 60.02554 * 21 20 19 41 41 H 1.08997 * 109.47764 * 300.04648 * 22 21 20 42 42 H 1.09001 * 109.47436 * 180.02562 * 22 21 20 43 43 H 1.08993 * 109.47445 * 179.97438 * 23 22 21 44 44 H 1.09004 * 109.47005 * 59.95759 * 23 22 21 45 45 H 1.08995 * 109.46773 * 180.23797 * 24 19 18 46 46 H 1.09001 * 109.45920 * 300.22288 * 24 19 18 47 47 H 1.09009 * 109.52095 * 177.48748 * 25 19 18 48 48 H 1.09003 * 109.52170 * 297.60580 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1262 1.4438 -0.0922 5 6 1.4364 2.1887 -1.1618 6 1 0.8272 3.0627 -0.9843 7 6 1.6618 1.7558 -2.4512 8 7 2.4039 0.6918 -2.6674 9 14 0.9130 2.6804 -3.8913 10 1 1.4075 4.0808 -3.8914 11 1 1.3023 2.0174 -5.1616 12 1 -0.5667 2.6781 -3.7655 13 7 1.6545 2.0982 1.2567 14 6 2.6391 1.8306 2.3137 15 1 3.0545 0.8314 2.1825 16 6 3.7644 2.8672 2.2400 17 6 4.7437 2.6283 3.3923 18 8 4.0421 2.7010 4.6351 19 6 3.0085 1.7252 4.7799 20 6 2.3473 1.8805 6.1508 21 6 3.3929 1.6744 7.2485 22 6 3.9907 0.2713 7.1265 23 6 4.6536 0.1174 5.7563 24 6 3.6084 0.3231 4.6581 25 6 1.9598 1.9275 3.6831 26 1 -0.3633 0.4281 0.9343 27 1 -0.3633 0.5952 -0.8378 28 1 -0.3633 -1.0231 -0.0965 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.5621 0.3870 -3.5746 32 1 0.7298 1.8144 1.5437 33 1 3.3428 3.8691 2.3220 34 1 4.2891 2.7684 1.2897 35 1 5.1952 1.6418 3.2870 36 1 5.5237 3.3894 3.3701 37 1 1.9216 2.8802 6.2376 38 1 1.5563 1.1383 6.2586 39 1 2.9211 1.7847 8.2249 40 1 4.1836 2.4170 7.1410 41 1 3.1999 -0.4712 7.2331 42 1 4.7353 0.1243 7.9089 43 1 5.0800 -0.8818 5.6691 44 1 5.4438 0.8606 5.6495 45 1 2.8185 -0.4204 4.7645 46 1 4.0809 0.2139 3.6819 47 1 1.1937 1.1564 3.7651 48 1 1.5010 2.9100 3.7946 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894469590.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:47 Heat of formation + Delta-G solvation = -75.816460 kcal Electronic energy + Delta-G solvation = -24120.024870 eV Core-core repulsion = 20980.329017 eV Total energy + Delta-G solvation = -3139.695853 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.41387 -37.02284 -35.89810 -33.50258 -31.63343 -31.37205 -30.66075 -29.25071 -27.06988 -25.63285 -23.33561 -23.29299 -22.87913 -21.69368 -19.95850 -19.16886 -18.81422 -16.27954 -16.06573 -15.66243 -15.11226 -14.80733 -14.67142 -14.58757 -14.10385 -13.56570 -13.35272 -13.12995 -12.96907 -12.57144 -12.46411 -12.27066 -12.17727 -11.96588 -11.76471 -11.39139 -11.16325 -11.01504 -10.95796 -10.81346 -10.64852 -10.58524 -10.52736 -10.30050 -10.22210 -10.04957 -9.82043 -9.57847 -9.42148 -9.10640 -8.90685 -8.32812 -7.18621 -5.96365 -3.97664 3.34665 3.39029 3.42426 3.93814 4.44399 4.63807 4.72954 4.79839 5.05470 5.12153 5.14206 5.29989 5.35189 5.37800 5.40523 5.50545 5.59035 5.60450 5.69187 5.72654 5.74054 5.83471 5.98702 6.00807 6.04558 6.14766 6.18074 6.20555 6.26505 6.32803 6.34894 6.35641 6.39641 6.48428 6.56517 6.61971 6.82189 6.89551 7.29228 7.32109 7.51427 7.52071 7.71347 7.91407 8.31354 8.58388 8.65783 9.08050 9.66000 11.10621 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.031460 B = 0.004167 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.804385 B = 6717.790942 C = 6911.401148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.145 4.145 3 C 0.217 3.783 4 H 0.032 0.968 5 C -0.488 4.488 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.680 5.680 14 C 0.089 3.911 15 H 0.037 0.963 16 C -0.139 4.139 17 C 0.059 3.941 18 O -0.371 6.371 19 C 0.127 3.873 20 C -0.103 4.103 21 C -0.115 4.115 22 C -0.118 4.118 23 C -0.115 4.115 24 C -0.147 4.147 25 C -0.143 4.143 26 H 0.026 0.974 27 H 0.069 0.931 28 H 0.022 0.978 29 H 0.092 0.908 30 H 0.008 0.992 31 H 0.259 0.741 32 H 0.326 0.674 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.673 -1.021 17.017 17.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.184 4.184 3 C 0.109 3.891 4 H 0.049 0.951 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.311 5.311 14 C -0.021 4.021 15 H 0.055 0.945 16 C -0.178 4.178 17 C -0.018 4.018 18 O -0.290 6.290 19 C 0.087 3.913 20 C -0.140 4.140 21 C -0.153 4.153 22 C -0.155 4.155 23 C -0.152 4.152 24 C -0.184 4.184 25 C -0.181 4.181 26 H 0.045 0.955 27 H 0.088 0.912 28 H 0.042 0.958 29 H 0.110 0.890 30 H 0.027 0.973 31 H 0.069 0.931 32 H 0.145 0.855 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.082 0.918 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.054 -0.385 16.816 17.096 hybrid contribution -0.653 -0.797 -1.047 1.469 sum 2.401 -1.182 15.769 15.995 Atomic orbital electron populations 1.21597 0.97725 0.98651 1.00733 1.22105 0.94979 1.01285 1.00079 1.19212 0.95807 0.88415 0.85652 0.95057 1.21036 1.30476 1.11442 0.89710 0.92146 1.24906 0.95567 0.95165 0.98697 1.69870 1.39043 1.24016 1.20735 0.86647 0.79554 0.80017 0.81680 1.20360 1.21544 1.20418 1.60854 1.03521 1.63217 1.03486 1.21434 0.93937 0.96340 0.90426 0.94504 1.22177 0.96699 1.00686 0.98223 1.22616 0.94331 1.00928 0.83924 1.87874 1.49240 1.55183 1.36742 1.21334 0.87597 0.87786 0.94630 1.21513 0.97562 1.02286 0.92666 1.21457 0.98892 0.97310 0.97626 1.21523 0.99728 0.97200 0.97053 1.21448 0.98272 1.01174 0.94346 1.22177 0.99407 0.97234 0.99629 1.22385 0.98019 1.02748 0.94954 0.95471 0.91196 0.95839 0.88985 0.97285 0.93117 0.85510 0.90881 0.90876 0.93453 0.89390 0.91304 0.91006 0.92473 0.91127 0.92384 0.92380 0.92447 0.91495 0.91341 0.91022 0.91774 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.40 37.16 0.35 -2.41 16 2 C -0.14 -3.37 5.49 -26.73 -0.15 -3.52 16 3 C 0.22 5.28 2.14 -68.87 -0.15 5.13 16 4 H 0.03 0.85 7.27 -51.93 -0.38 0.47 16 5 C -0.49 -13.10 7.25 -34.44 -0.25 -13.35 16 6 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 7 C 0.06 1.55 5.28 -17.82 -0.09 1.46 16 8 N -0.90 -25.18 11.38 55.43 0.63 -24.55 16 9 Si 0.89 21.33 29.54 -169.99 -5.02 16.30 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.68 -14.14 6.05 -100.76 -0.61 -14.75 16 14 C 0.09 1.57 2.05 -67.53 -0.14 1.43 16 15 H 0.04 0.69 5.64 -51.93 -0.29 0.40 16 16 C -0.14 -2.36 5.63 -26.59 -0.15 -2.51 16 17 C 0.06 0.83 6.52 37.21 0.24 1.08 16 18 O -0.37 -5.31 8.92 -35.23 -0.31 -5.63 16 19 C 0.13 1.65 0.68 -90.58 -0.06 1.59 16 20 C -0.10 -1.15 4.94 -26.74 -0.13 -1.28 16 21 C -0.12 -1.17 5.78 -26.73 -0.15 -1.32 16 22 C -0.12 -1.14 5.92 -26.73 -0.16 -1.29 16 23 C -0.11 -1.25 5.78 -26.74 -0.15 -1.41 16 24 C -0.15 -1.83 4.03 -26.74 -0.11 -1.94 16 25 C -0.14 -2.11 4.17 -26.60 -0.11 -2.23 16 26 H 0.03 0.51 6.65 -51.93 -0.35 0.17 16 27 H 0.07 1.64 6.85 -51.93 -0.36 1.28 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.09 2.41 6.23 -51.93 -0.32 2.09 16 30 H 0.01 0.19 7.45 -51.93 -0.39 -0.20 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.33 6.55 6.27 -39.29 -0.25 6.30 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.07 1.36 7.60 -51.93 -0.39 0.96 16 35 H 0.05 0.65 6.35 -51.93 -0.33 0.32 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.79 7.69 -51.93 -0.40 0.39 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.78 7.69 -51.93 -0.40 0.38 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.07 0.99 4.98 -51.93 -0.26 0.73 16 47 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 48 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 346.75 15.07 5.23 5.23 Total: -1.00 -27.31 346.75 -10.03 -37.34 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -8.73 Total: 6.62 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: -1.21 Total: -20.57 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.02 Total: -39.30 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.31 Total: -5.63 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -27.31 -10.03 -37.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894469590.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.475 kcal (2) G-P(sol) polarization free energy of solvation -27.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds