Wall clock time and date at job start Tue Mar 31 2020 06:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.47176 * 2 1 4 4 H 1.09005 * 109.47102 * 185.14889 * 3 2 1 5 5 C 1.50700 * 109.47462 * 305.14584 * 3 2 1 6 6 H 1.08005 * 120.00147 * 119.99724 * 5 3 2 7 7 C 1.37874 * 120.00079 * 300.00294 * 5 3 2 8 8 N 1.31509 * 120.00105 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00190 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47023 * 60.00038 * 9 7 5 11 11 H 1.48493 * 109.47430 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47198 * 300.00132 * 9 7 5 13 13 N 1.46899 * 109.47408 * 65.14694 * 3 2 1 14 14 C 1.46908 * 110.99830 * 85.58420 * 13 3 2 15 15 H 1.09002 * 109.61736 * 326.40348 * 14 13 3 16 16 C 1.53174 * 109.54229 * 86.62769 * 14 13 3 17 17 C 1.53098 * 109.15645 * 176.86565 * 16 14 13 18 18 O 1.42897 * 109.42472 * 302.39112 * 17 16 14 19 19 C 1.42882 * 114.11627 * 61.11843 * 18 17 16 20 20 C 1.52988 * 109.52341 * 178.95276 * 19 18 17 21 21 C 1.52992 * 109.50519 * 299.77949 * 20 19 18 22 22 C 1.53003 * 109.47138 * 300.02360 * 21 20 19 23 23 C 1.52994 * 109.44751 * 60.04194 * 22 21 20 24 24 C 1.52993 * 109.52203 * 58.85248 * 19 18 17 25 25 C 1.53090 * 109.43141 * 298.89819 * 19 18 17 26 26 H 1.09000 * 109.46864 * 294.61883 * 1 2 3 27 27 H 1.09001 * 109.46666 * 54.61033 * 1 2 3 28 28 H 1.09000 * 109.47189 * 174.61285 * 1 2 3 29 29 H 1.09003 * 109.46667 * 240.00270 * 2 1 3 30 30 H 1.08995 * 109.46743 * 120.00331 * 2 1 3 31 31 H 0.97003 * 120.00196 * 179.97438 * 8 7 5 32 32 H 1.00896 * 110.99923 * 321.63696 * 13 3 2 33 33 H 1.09005 * 109.52726 * 56.96223 * 16 14 13 34 34 H 1.09001 * 109.52657 * 296.76667 * 16 14 13 35 35 H 1.08997 * 109.47965 * 62.37780 * 17 16 14 36 36 H 1.09002 * 109.47903 * 182.40457 * 17 16 14 37 37 H 1.09000 * 109.46168 * 59.79341 * 20 19 18 38 38 H 1.09003 * 109.46269 * 179.76894 * 20 19 18 39 39 H 1.09001 * 109.46728 * 180.02562 * 21 20 19 40 40 H 1.09007 * 109.46792 * 60.02554 * 21 20 19 41 41 H 1.08997 * 109.47764 * 300.04648 * 22 21 20 42 42 H 1.09001 * 109.47436 * 180.02562 * 22 21 20 43 43 H 1.08993 * 109.47445 * 179.97438 * 23 22 21 44 44 H 1.09004 * 109.47005 * 59.95759 * 23 22 21 45 45 H 1.08995 * 109.46773 * 180.23797 * 24 19 18 46 46 H 1.09001 * 109.45920 * 300.22288 * 24 19 18 47 47 H 1.09009 * 109.52095 * 177.48748 * 25 19 18 48 48 H 1.09003 * 109.52170 * 297.60580 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1262 1.4438 -0.0922 5 6 1.4364 2.1887 -1.1618 6 1 0.8272 3.0627 -0.9843 7 6 1.6618 1.7558 -2.4512 8 7 2.4039 0.6918 -2.6674 9 14 0.9130 2.6804 -3.8913 10 1 1.4075 4.0808 -3.8914 11 1 1.3023 2.0174 -5.1616 12 1 -0.5667 2.6781 -3.7655 13 7 1.6545 2.0982 1.2567 14 6 2.6391 1.8306 2.3137 15 1 3.0545 0.8314 2.1825 16 6 3.7644 2.8672 2.2400 17 6 4.7437 2.6283 3.3923 18 8 4.0421 2.7010 4.6351 19 6 3.0085 1.7252 4.7799 20 6 2.3473 1.8805 6.1508 21 6 3.3929 1.6744 7.2485 22 6 3.9907 0.2713 7.1265 23 6 4.6536 0.1174 5.7563 24 6 3.6084 0.3231 4.6581 25 6 1.9598 1.9275 3.6831 26 1 -0.3633 0.4281 0.9343 27 1 -0.3633 0.5952 -0.8378 28 1 -0.3633 -1.0231 -0.0965 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.5621 0.3870 -3.5746 32 1 0.7298 1.8144 1.5437 33 1 3.3428 3.8691 2.3220 34 1 4.2891 2.7684 1.2897 35 1 5.1952 1.6418 3.2870 36 1 5.5237 3.3894 3.3701 37 1 1.9216 2.8802 6.2376 38 1 1.5563 1.1383 6.2586 39 1 2.9211 1.7847 8.2249 40 1 4.1836 2.4170 7.1410 41 1 3.1999 -0.4712 7.2331 42 1 4.7353 0.1243 7.9089 43 1 5.0800 -0.8818 5.6691 44 1 5.4438 0.8606 5.6495 45 1 2.8185 -0.4204 4.7645 46 1 4.0809 0.2139 3.6819 47 1 1.1937 1.1564 3.7651 48 1 1.5010 2.9100 3.7946 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894469590.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:46 Heat of formation + Delta-G solvation = -90.627025 kcal Electronic energy + Delta-G solvation = -24120.667104 eV Core-core repulsion = 20980.329017 eV Total energy + Delta-G solvation = -3140.338087 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.53853 -38.54308 -37.09792 -35.15088 -33.31946 -32.60571 -31.63325 -30.81929 -28.56585 -27.24899 -25.16318 -24.61454 -23.84410 -22.82390 -21.25506 -20.67686 -20.06817 -18.15550 -17.27608 -16.84829 -16.80116 -16.27760 -16.07892 -15.73873 -15.34087 -14.91106 -14.71202 -14.45340 -14.28429 -14.19001 -14.01787 -13.56714 -13.30432 -13.08247 -13.04923 -12.82668 -12.68013 -12.52283 -12.45467 -12.36600 -12.09685 -11.94201 -11.78582 -11.67757 -11.54697 -11.40574 -11.30812 -11.19731 -10.97983 -10.55775 -10.42514 -10.25024 -8.91773 -8.05498 -6.13686 1.43168 1.43778 1.51274 2.45153 2.85640 3.23206 3.47914 3.69342 3.82330 3.86976 4.03956 4.09514 4.23038 4.28290 4.35099 4.43882 4.48563 4.53611 4.59907 4.62218 4.63691 4.65570 4.71493 4.75697 4.79909 4.84155 4.93046 5.06806 5.08204 5.11926 5.16812 5.18639 5.29615 5.31146 5.35850 5.37897 5.42716 5.43973 5.49743 5.61582 5.69131 5.73711 5.86906 6.33484 6.38942 6.70991 6.88417 6.99989 7.54195 8.99625 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.031460 B = 0.004167 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.804385 B = 6717.790942 C = 6911.401148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.137 4.137 3 C 0.226 3.774 4 H -0.006 1.006 5 C -0.500 4.500 6 H 0.050 0.950 7 C 0.015 3.985 8 N -0.921 5.921 9 Si 0.949 3.051 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.271 1.271 13 N -0.684 5.684 14 C 0.090 3.910 15 H 0.025 0.975 16 C -0.136 4.136 17 C 0.067 3.933 18 O -0.375 6.375 19 C 0.125 3.875 20 C -0.102 4.102 21 C -0.113 4.113 22 C -0.115 4.115 23 C -0.113 4.113 24 C -0.146 4.146 25 C -0.135 4.135 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.041 0.959 29 H 0.060 0.940 30 H 0.022 0.978 31 H 0.258 0.742 32 H 0.332 0.668 33 H 0.062 0.938 34 H 0.047 0.953 35 H 0.051 0.949 36 H 0.105 0.895 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.057 0.943 45 H 0.075 0.925 46 H 0.052 0.948 47 H 0.074 0.926 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.911 -1.223 18.931 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.177 4.177 3 C 0.117 3.883 4 H 0.012 0.988 5 C -0.539 4.539 6 H 0.069 0.931 7 C -0.184 4.184 8 N -0.561 5.561 9 Si 0.776 3.224 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.196 1.196 13 N -0.315 5.315 14 C -0.020 4.020 15 H 0.043 0.957 16 C -0.175 4.175 17 C -0.010 4.010 18 O -0.294 6.294 19 C 0.086 3.914 20 C -0.139 4.139 21 C -0.150 4.150 22 C -0.152 4.152 23 C -0.150 4.150 24 C -0.183 4.183 25 C -0.173 4.173 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.151 0.849 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.123 0.877 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.070 0.930 47 H 0.093 0.907 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.286 -0.581 18.748 18.896 hybrid contribution -0.391 -0.729 -1.628 1.826 sum 1.895 -1.310 17.120 17.275 Atomic orbital electron populations 1.21476 0.95869 0.99593 1.00852 1.21943 0.96543 1.00109 0.99119 1.18912 0.93336 0.89240 0.86764 0.98764 1.21259 1.30366 1.11316 0.90935 0.93135 1.25573 0.95947 0.95875 1.00967 1.70003 1.39956 1.25107 1.21037 0.85744 0.79078 0.78737 0.78844 1.20260 1.21239 1.19645 1.60745 1.04507 1.62924 1.03335 1.21473 0.93581 0.95798 0.91163 0.95671 1.22123 0.97028 0.99916 0.98383 1.22550 0.93806 1.01784 0.82839 1.87884 1.49515 1.55764 1.36240 1.21465 0.86877 0.87929 0.95178 1.21547 0.98091 1.02745 0.91544 1.21441 0.98274 0.97236 0.98049 1.21521 1.00229 0.97096 0.96380 1.21437 0.97603 1.01367 0.94641 1.22154 0.99947 0.96918 0.99303 1.22331 0.98582 1.02848 0.93551 0.93217 0.93627 0.93945 0.92135 0.95944 0.93253 0.84918 0.91882 0.93417 0.93064 0.87655 0.91442 0.89580 0.90647 0.92362 0.91490 0.91088 0.91635 0.92406 0.90666 0.92979 0.90703 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.01 9.40 71.98 0.68 -4.33 16 2 C -0.14 -6.45 5.49 30.59 0.17 -6.28 16 3 C 0.23 11.29 2.14 44.17 0.09 11.39 16 4 H -0.01 -0.32 7.27 -2.38 -0.02 -0.33 16 5 C -0.50 -27.38 7.25 25.60 0.19 -27.20 16 6 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 7 C 0.01 0.80 5.28 84.65 0.45 1.25 16 8 N -0.92 -52.84 11.38 21.45 0.24 -52.59 16 9 Si 0.95 44.08 29.54 68.60 2.03 46.10 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 13 N -0.68 -28.74 6.05 -472.71 -2.86 -31.60 16 14 C 0.09 3.19 2.05 45.03 0.09 3.28 16 15 H 0.03 0.97 5.64 -2.39 -0.01 0.95 16 16 C -0.14 -4.72 5.63 30.69 0.17 -4.55 16 17 C 0.07 1.88 6.52 72.01 0.47 2.35 16 18 O -0.37 -10.28 8.92 -148.98 -1.33 -11.61 16 19 C 0.13 3.08 0.68 -10.77 -0.01 3.07 16 20 C -0.10 -2.02 4.94 30.59 0.15 -1.87 16 21 C -0.11 -1.96 5.78 30.59 0.18 -1.78 16 22 C -0.11 -1.87 5.92 30.59 0.18 -1.69 16 23 C -0.11 -2.23 5.78 30.59 0.18 -2.06 16 24 C -0.15 -3.41 4.03 30.59 0.12 -3.29 16 25 C -0.14 -3.84 4.17 30.68 0.13 -3.71 16 26 H 0.05 1.81 6.65 -2.39 -0.02 1.79 16 27 H 0.04 2.11 6.85 -2.39 -0.02 2.09 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.06 3.24 6.23 -2.39 -0.01 3.23 16 30 H 0.02 0.96 7.45 -2.39 -0.02 0.94 16 31 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 32 H 0.33 13.10 6.27 -89.70 -0.56 12.54 16 33 H 0.06 2.28 8.14 -2.38 -0.02 2.27 16 34 H 0.05 1.87 7.60 -2.39 -0.02 1.85 16 35 H 0.05 1.40 6.35 -2.39 -0.02 1.39 16 36 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.09 1.47 8.14 -2.39 -0.02 1.46 16 39 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.06 1.17 7.69 -2.38 -0.02 1.15 16 41 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.06 1.25 7.69 -2.39 -0.02 1.23 16 45 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.05 1.42 4.98 -2.39 -0.01 1.41 16 47 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 48 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -59.19 346.75 1.67 -57.52 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.35 Total: 27.59 kcal Atomic # 6 Polarization: -38.65 SS G_CDS: 3.24 Total: -35.41 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -2.62 Total: -84.19 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: -1.33 Total: -11.61 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -59.19 1.67 -57.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894469590.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.105 kcal (2) G-P(sol) polarization free energy of solvation -59.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds