Wall clock time and date at job start Tue Mar 31 2020 06:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47273 * 2 1 4 4 H 1.09002 * 109.46803 * 305.64280 * 3 2 1 5 5 C 1.50699 * 109.47093 * 185.64524 * 3 2 1 6 6 H 1.08005 * 120.00162 * 239.99625 * 5 3 2 7 7 C 1.37879 * 120.00268 * 59.99850 * 5 3 2 8 8 N 1.31513 * 119.99886 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00180 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47205 * 59.99806 * 9 7 5 11 11 H 1.48498 * 109.46982 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46848 * 299.99670 * 9 7 5 13 13 N 1.46900 * 109.47412 * 65.64470 * 3 2 1 14 14 C 1.46895 * 111.00011 * 204.33759 * 13 3 2 15 15 H 1.08994 * 109.54753 * 325.74431 * 14 13 3 16 16 C 1.53186 * 109.54539 * 86.01691 * 14 13 3 17 17 C 1.53096 * 109.14650 * 176.87539 * 16 14 13 18 18 O 1.42898 * 109.42929 * 302.37598 * 17 16 14 19 19 C 1.42883 * 114.11945 * 61.12014 * 18 17 16 20 20 C 1.52978 * 109.53482 * 58.89269 * 19 18 17 21 21 C 1.52988 * 109.51233 * 60.23466 * 20 19 18 22 22 C 1.53001 * 109.47734 * 59.97352 * 21 20 19 23 23 C 1.53006 * 109.43741 * 299.95588 * 22 21 20 24 24 C 1.52989 * 109.51810 * 178.99708 * 19 18 17 25 25 C 1.53102 * 109.43781 * 298.91944 * 19 18 17 26 26 H 1.09000 * 109.47367 * 173.72156 * 1 2 3 27 27 H 1.09003 * 109.47205 * 293.71963 * 1 2 3 28 28 H 1.09002 * 109.47271 * 53.71887 * 1 2 3 29 29 H 1.09000 * 109.46951 * 239.99773 * 2 1 3 30 30 H 1.09004 * 109.47115 * 120.00311 * 2 1 3 31 31 H 0.96996 * 120.00142 * 179.97438 * 8 7 5 32 32 H 1.00901 * 110.99841 * 328.29543 * 13 3 2 33 33 H 1.09001 * 109.51954 * 296.77551 * 16 14 13 34 34 H 1.08996 * 109.52363 * 56.97286 * 16 14 13 35 35 H 1.08996 * 109.47827 * 62.36942 * 17 16 14 36 36 H 1.09006 * 109.47510 * 182.39391 * 17 16 14 37 37 H 1.09008 * 109.45678 * 300.22405 * 20 19 18 38 38 H 1.08992 * 109.46720 * 180.25166 * 20 19 18 39 39 H 1.09006 * 109.47281 * 299.97577 * 21 20 19 40 40 H 1.09002 * 109.46970 * 179.97438 * 21 20 19 41 41 H 1.09004 * 109.47289 * 59.94519 * 22 21 20 42 42 H 1.09003 * 109.47821 * 179.97438 * 22 21 20 43 43 H 1.08997 * 109.47475 * 180.02562 * 23 22 21 44 44 H 1.08997 * 109.47511 * 300.05252 * 23 22 21 45 45 H 1.08998 * 109.46922 * 179.75328 * 24 19 18 46 46 H 1.09004 * 109.46241 * 59.76566 * 24 19 18 47 47 H 1.08999 * 109.51689 * 177.47266 * 25 19 18 48 48 H 1.09003 * 109.52132 * 297.59273 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9846 -0.8352 5 6 3.5405 1.4447 -0.1398 6 1 4.1541 1.8864 0.6316 7 6 4.1301 0.8829 -1.2523 8 7 3.3831 0.3446 -2.1913 9 14 5.9902 0.8851 -1.4252 10 1 6.5939 0.1461 -0.2875 11 1 6.3694 0.2266 -2.7010 12 1 6.4856 2.2850 -1.4249 13 7 1.6648 2.0946 1.2617 14 6 1.5996 3.5533 1.1013 15 1 2.3594 3.8763 0.3897 16 6 0.2121 3.9509 0.5880 17 6 0.1282 5.4769 0.4985 18 8 0.3961 6.0439 1.7825 19 6 1.6965 5.7443 2.2932 20 6 2.7591 6.2588 1.3203 21 6 2.6166 7.7738 1.1623 22 6 2.8017 8.4483 2.5231 23 6 1.7371 7.9351 3.4948 24 6 1.8796 6.4200 3.6535 25 6 1.8441 4.2290 2.4540 26 1 -0.3634 -1.0215 -0.1124 27 1 -0.3634 0.4134 0.9409 28 1 -0.3634 0.6081 -0.8284 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.7979 -0.0502 -2.9742 32 1 0.7915 1.7298 1.6115 33 1 0.0515 3.5186 -0.3996 34 1 -0.5497 3.5839 1.2757 35 1 0.8633 5.8399 -0.2198 36 1 -0.8712 5.7675 0.1742 37 1 2.6268 5.7784 0.3508 38 1 3.7505 6.0258 1.7087 39 1 1.6254 8.0069 0.7731 40 1 3.3743 8.1397 0.4694 41 1 3.7925 8.2146 2.9127 42 1 2.7006 9.5278 2.4104 43 1 1.8681 8.4156 4.4643 44 1 0.7463 8.1678 3.1045 45 1 2.8701 6.1874 4.0443 46 1 1.1209 6.0545 4.3456 47 1 2.8508 3.9959 2.8009 48 1 1.1158 3.8671 3.1799 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894469592.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:48 Heat of formation + Delta-G solvation = -77.769383 kcal Electronic energy + Delta-G solvation = -24191.268064 eV Core-core repulsion = 21051.487526 eV Total energy + Delta-G solvation = -3139.780538 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.33036 -36.97239 -35.76331 -33.40328 -31.73679 -31.43276 -30.59977 -29.40481 -26.99974 -25.90391 -23.28216 -22.92871 -22.56868 -21.54355 -19.79977 -19.57100 -18.86117 -16.27426 -16.07750 -15.66786 -15.17164 -14.70981 -14.65524 -14.15054 -14.03697 -13.67826 -13.38578 -13.18007 -13.05914 -12.70021 -12.23220 -12.12362 -12.06267 -11.99106 -11.72493 -11.33587 -11.17265 -11.01139 -10.89008 -10.85219 -10.67858 -10.62506 -10.42567 -10.32590 -10.20138 -9.96904 -9.88574 -9.67082 -9.29129 -9.15369 -8.90793 -8.34755 -7.18081 -5.96504 -4.00621 3.33122 3.37572 3.40903 3.99186 4.44245 4.72855 4.83690 4.89693 5.11544 5.20588 5.25970 5.32035 5.36044 5.37113 5.48434 5.59310 5.63591 5.70437 5.75601 5.80332 5.84566 5.89222 6.06615 6.08974 6.13571 6.16341 6.16884 6.22748 6.26723 6.30246 6.32425 6.36557 6.41594 6.47439 6.57788 6.64296 6.81328 6.85066 7.09839 7.20286 7.52185 7.57092 7.78898 7.92708 8.33451 8.41058 8.78669 9.07319 9.64389 11.08670 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018006 B = 0.005360 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.663658 B = 5222.573238 C = 6163.632834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.220 3.780 4 H 0.001 0.999 5 C -0.492 4.492 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.681 5.681 14 C 0.095 3.905 15 H 0.084 0.916 16 C -0.183 4.183 17 C 0.064 3.936 18 O -0.373 6.373 19 C 0.123 3.877 20 C -0.147 4.147 21 C -0.115 4.115 22 C -0.118 4.118 23 C -0.115 4.115 24 C -0.102 4.102 25 C -0.127 4.127 26 H 0.036 0.964 27 H 0.035 0.965 28 H 0.041 0.959 29 H 0.099 0.901 30 H 0.040 0.960 31 H 0.259 0.741 32 H 0.317 0.683 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.074 0.926 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.932 12.292 7.547 15.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C 0.113 3.887 4 H 0.019 0.981 5 C -0.531 4.531 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.205 1.205 13 N -0.310 5.310 14 C -0.016 4.016 15 H 0.102 0.898 16 C -0.222 4.222 17 C -0.013 4.013 18 O -0.292 6.292 19 C 0.083 3.917 20 C -0.184 4.184 21 C -0.153 4.153 22 C -0.155 4.155 23 C -0.153 4.153 24 C -0.139 4.139 25 C -0.165 4.165 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.117 0.883 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.134 0.866 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.085 0.915 47 H 0.093 0.907 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.378 12.281 7.708 15.146 hybrid contribution 0.314 -0.286 -0.956 1.046 sum -4.064 11.996 6.752 14.353 Atomic orbital electron populations 1.21874 0.99643 0.99659 0.99464 1.21766 0.91192 1.00484 1.03006 1.19148 0.95282 0.89868 0.84422 0.98129 1.21178 0.91332 1.36499 1.04125 0.92226 1.24947 0.97958 0.95678 0.95892 1.69859 1.34711 1.39497 1.09573 0.86642 0.85958 0.78124 0.77145 1.20314 1.21466 1.20468 1.60757 1.35440 1.01835 1.32999 1.21500 0.94464 0.90023 0.95584 0.89805 1.22961 1.00261 0.96700 1.02318 1.22470 1.00527 0.92807 0.85513 1.87860 1.32832 1.74231 1.34313 1.21434 0.83005 0.93911 0.93336 1.22163 0.99584 0.95884 1.00785 1.21454 1.01765 0.95164 0.96877 1.21526 0.98980 0.99227 0.95773 1.21458 0.99805 0.95326 0.98665 1.21505 1.01980 0.95277 0.95158 1.22169 1.02697 0.93104 0.98548 0.94452 0.94644 0.93975 0.88310 0.94114 0.93067 0.86567 0.91185 0.91866 0.93075 0.89809 0.90880 0.90985 0.91693 0.92445 0.92304 0.92502 0.92569 0.91284 0.90842 0.91510 0.90703 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.63 37.16 0.36 -2.52 16 2 C -0.13 -2.95 5.37 -26.73 -0.14 -3.09 16 3 C 0.22 5.36 1.85 -68.87 -0.13 5.23 16 4 H 0.00 0.03 7.23 -51.93 -0.38 -0.35 16 5 C -0.49 -13.39 8.47 -34.44 -0.29 -13.68 16 6 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 7 C 0.06 1.52 5.29 -17.82 -0.09 1.43 16 8 N -0.90 -25.28 11.29 55.43 0.63 -24.66 16 9 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.68 -14.15 6.05 -100.76 -0.61 -14.76 16 14 C 0.10 1.74 2.04 -67.53 -0.14 1.60 16 15 H 0.08 1.75 6.09 -51.93 -0.32 1.43 16 16 C -0.18 -2.96 5.39 -26.59 -0.14 -3.10 16 17 C 0.06 0.92 6.51 37.21 0.24 1.16 16 18 O -0.37 -5.47 8.92 -35.23 -0.31 -5.78 16 19 C 0.12 1.71 0.68 -90.58 -0.06 1.65 16 20 C -0.15 -2.03 4.04 -26.75 -0.11 -2.13 16 21 C -0.12 -1.37 5.78 -26.74 -0.15 -1.53 16 22 C -0.12 -1.24 5.93 -26.73 -0.16 -1.40 16 23 C -0.12 -1.25 5.78 -26.73 -0.15 -1.40 16 24 C -0.10 -1.22 4.94 -26.74 -0.13 -1.35 16 25 C -0.13 -2.02 4.52 -26.59 -0.12 -2.14 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.03 0.61 6.67 -51.93 -0.35 0.27 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.10 2.61 5.94 -51.93 -0.31 2.30 16 30 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.32 6.15 6.31 -39.29 -0.25 5.90 16 33 H 0.07 1.22 7.54 -51.93 -0.39 0.82 16 34 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 35 H 0.05 0.73 6.35 -51.93 -0.33 0.40 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.12 4.98 -51.92 -0.26 0.86 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.06 0.81 7.69 -51.93 -0.40 0.41 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.81 7.69 -51.93 -0.40 0.41 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 48 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 349.88 15.07 5.27 5.27 Total: -1.00 -27.51 349.88 -10.11 -37.61 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -8.83 Total: 7.23 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -1.23 Total: -21.28 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.02 Total: -39.42 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -0.31 Total: -5.78 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.51 -10.11 -37.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894469592.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.156 kcal (2) G-P(sol) polarization free energy of solvation -27.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds