Wall clock time and date at job start Tue Mar 31 2020 06:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46998 * 2 1 4 4 H 1.08996 * 109.46792 * 302.95540 * 3 2 1 5 5 C 1.50699 * 109.46746 * 182.96086 * 3 2 1 6 6 H 1.08004 * 119.99912 * 239.99838 * 5 3 2 7 7 C 1.37874 * 120.00427 * 59.99881 * 5 3 2 8 8 N 1.31520 * 119.99582 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00379 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47292 * 89.99923 * 9 7 5 11 11 H 1.48505 * 109.47265 * 210.00149 * 9 7 5 12 12 H 1.48506 * 109.46993 * 329.99937 * 9 7 5 13 13 N 1.46897 * 109.47186 * 62.95791 * 3 2 1 14 14 C 1.46894 * 110.99972 * 209.58544 * 13 3 2 15 15 H 1.08998 * 109.54414 * 32.33903 * 14 13 3 16 16 C 1.53192 * 109.54496 * 272.16351 * 14 13 3 17 17 C 1.53094 * 109.14757 * 183.12619 * 16 14 13 18 18 O 1.42895 * 109.42650 * 57.61920 * 17 16 14 19 19 C 1.42887 * 114.12624 * 298.87743 * 18 17 16 20 20 C 1.52986 * 109.51921 * 301.12065 * 19 18 17 21 21 C 1.52993 * 109.50347 * 299.78745 * 20 19 18 22 22 C 1.53008 * 109.47198 * 300.02214 * 21 20 19 23 23 C 1.53004 * 109.44451 * 60.03659 * 22 21 20 24 24 C 1.52982 * 109.52445 * 181.02039 * 19 18 17 25 25 C 1.53109 * 109.50596 * 61.03434 * 19 18 17 26 26 H 1.08999 * 109.47118 * 294.88062 * 1 2 3 27 27 H 1.09009 * 109.46902 * 54.87636 * 1 2 3 28 28 H 1.08996 * 109.47036 * 174.87996 * 1 2 3 29 29 H 1.08995 * 109.47218 * 240.00199 * 2 1 3 30 30 H 1.08996 * 109.46944 * 119.99604 * 2 1 3 31 31 H 0.97005 * 119.99699 * 179.97438 * 8 7 5 32 32 H 1.00900 * 110.99604 * 85.63522 * 13 3 2 33 33 H 1.08997 * 109.51830 * 303.02805 * 16 14 13 34 34 H 1.08998 * 109.51986 * 63.15550 * 16 14 13 35 35 H 1.09006 * 109.47416 * 177.60506 * 17 16 14 36 36 H 1.09000 * 109.47828 * 297.62885 * 17 16 14 37 37 H 1.09003 * 109.46717 * 59.80177 * 20 19 18 38 38 H 1.08998 * 109.46252 * 179.77770 * 20 19 18 39 39 H 1.08999 * 109.46917 * 180.02562 * 21 20 19 40 40 H 1.08995 * 109.47114 * 60.02294 * 21 20 19 41 41 H 1.09003 * 109.47559 * 300.05159 * 22 21 20 42 42 H 1.08996 * 109.47859 * 180.02562 * 22 21 20 43 43 H 1.08996 * 109.47100 * 179.97438 * 23 22 21 44 44 H 1.09001 * 109.46746 * 59.96158 * 23 22 21 45 45 H 1.08994 * 109.46703 * 180.22012 * 24 19 18 46 46 H 1.09003 * 109.46242 * 300.21671 * 24 19 18 47 47 H 1.08994 * 109.59597 * 182.62483 * 25 19 18 48 48 H 1.09004 * 109.44660 * 62.43889 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6340 1.9714 -0.8623 5 6 3.5452 1.4431 -0.0734 6 1 4.1242 1.8970 0.7173 7 6 4.1832 0.8643 -1.1499 8 7 3.4781 0.3111 -2.1125 9 14 6.0490 0.8656 -1.2412 10 1 6.5775 -0.3582 -0.5869 11 1 6.4750 0.8898 -2.6636 12 1 6.5777 2.0665 -0.5457 13 7 1.6096 2.1141 1.2335 14 6 1.4319 3.5556 1.0137 15 1 1.0947 3.7298 -0.0081 16 6 2.7636 4.2771 1.2437 17 6 2.5509 5.7852 1.0890 18 8 1.5504 6.2213 2.0113 19 6 0.2714 5.6151 1.8154 20 6 -0.2269 5.9188 0.4012 21 6 -0.3526 7.4326 0.2180 22 6 -1.3464 7.9892 1.2396 23 6 -0.8464 7.6867 2.6537 24 6 -0.7208 6.1730 2.8374 25 6 0.3908 4.0995 1.9968 26 1 -0.3633 0.4324 0.9323 27 1 -0.3633 0.5913 -0.8406 28 1 -0.3633 -1.0235 -0.0917 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9270 -0.0958 -2.8700 32 1 2.2596 1.9404 1.9855 33 1 3.1257 4.0614 2.2489 34 1 3.4948 3.9342 0.5117 35 1 3.4859 6.3070 1.2934 36 1 2.2274 6.0041 0.0714 37 1 0.4812 5.5224 -0.3265 38 1 -1.2008 5.4527 0.2514 39 1 -0.7081 7.6483 -0.7895 40 1 0.6213 7.8987 0.3673 41 1 -2.3202 7.5224 1.0910 42 1 -1.4363 9.0675 1.1089 43 1 -1.5539 8.0835 3.3818 44 1 0.1277 8.1528 2.8020 45 1 -1.6950 5.7072 2.6896 46 1 -0.3642 5.9579 3.8447 47 1 -0.5738 3.6309 1.8019 48 1 0.7040 3.8797 3.0175 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894469595.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:52 Heat of formation + Delta-G solvation = -80.210531 kcal Electronic energy + Delta-G solvation = -24184.237197 eV Core-core repulsion = 21044.350804 eV Total energy + Delta-G solvation = -3139.886394 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.31013 -36.90183 -35.69368 -33.37351 -31.62678 -31.45530 -30.65488 -29.36161 -27.10123 -25.65050 -23.32093 -22.85120 -22.43857 -21.55691 -19.85705 -19.52413 -18.83948 -16.53849 -16.11107 -15.61845 -15.12323 -14.75255 -14.55699 -14.08778 -13.94255 -13.50983 -13.28178 -13.19477 -12.97009 -12.75781 -12.32745 -12.11064 -11.98009 -11.80351 -11.35274 -11.30011 -11.13441 -11.08445 -10.97140 -10.79454 -10.70513 -10.63981 -10.44140 -10.38790 -10.20869 -10.14529 -9.75299 -9.57515 -9.27198 -9.03132 -8.89284 -8.39345 -7.24076 -6.01553 -4.13753 3.24700 3.32356 3.34220 4.03323 4.37111 4.71202 4.81157 4.88091 5.11142 5.22655 5.23822 5.31925 5.37693 5.44129 5.50639 5.58238 5.67917 5.72112 5.77441 5.80195 5.86043 5.91794 6.05505 6.06834 6.15119 6.23677 6.26446 6.33774 6.37776 6.39474 6.42568 6.45021 6.50402 6.59970 6.71869 6.78207 6.85650 7.13734 7.17237 7.45653 7.58812 7.61772 7.76845 8.09456 8.14385 8.34325 8.66490 8.99685 9.53565 10.98719 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022176 B = 0.004871 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.311119 B = 5746.979892 C = 6349.748039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.029 0.971 5 C -0.542 4.542 6 H 0.055 0.945 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.684 5.684 14 C 0.099 3.901 15 H 0.069 0.931 16 C -0.182 4.182 17 C 0.062 3.938 18 O -0.374 6.374 19 C 0.123 3.877 20 C -0.146 4.146 21 C -0.115 4.115 22 C -0.117 4.117 23 C -0.116 4.116 24 C -0.102 4.102 25 C -0.128 4.128 26 H 0.046 0.954 27 H 0.035 0.965 28 H 0.023 0.977 29 H 0.089 0.911 30 H 0.030 0.970 31 H 0.261 0.739 32 H 0.329 0.671 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.049 0.951 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.066 0.934 47 H 0.070 0.930 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.822 12.029 6.237 15.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.109 3.891 4 H 0.047 0.953 5 C -0.581 4.581 6 H 0.074 0.926 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.312 5.312 14 C -0.012 4.012 15 H 0.087 0.913 16 C -0.221 4.221 17 C -0.015 4.015 18 O -0.294 6.294 19 C 0.083 3.917 20 C -0.184 4.184 21 C -0.153 4.153 22 C -0.155 4.155 23 C -0.153 4.153 24 C -0.139 4.139 25 C -0.167 4.167 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.107 0.893 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.146 0.854 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.089 0.911 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.450 11.889 6.092 15.807 hybrid contribution 2.119 -0.076 -0.486 2.176 sum -6.331 11.813 5.606 14.528 Atomic orbital electron populations 1.21683 0.99095 0.98180 1.00314 1.21506 0.91984 0.99383 1.01612 1.19195 0.92582 0.91032 0.86337 0.95321 1.21885 0.92538 1.37464 1.06180 0.92640 1.24933 0.97855 0.95040 0.95675 1.69885 1.34914 1.37699 1.09803 0.86698 0.86296 0.78422 0.77183 1.20673 1.21259 1.20076 1.60908 1.53084 1.07039 1.10147 1.21447 0.92557 0.89255 0.97914 0.91282 1.23001 1.00812 0.95297 1.02962 1.22545 0.90946 0.95114 0.92923 1.87858 1.18898 1.66412 1.56194 1.21401 0.83915 0.92198 0.94158 1.22164 1.02057 0.96417 0.97727 1.21452 0.99860 0.95700 0.98261 1.21522 0.98682 1.00040 0.95226 1.21459 1.01490 0.96070 0.96284 1.21501 0.97896 0.95855 0.98667 1.22201 1.00463 0.93525 1.00502 0.93451 0.94607 0.95762 0.89319 0.95113 0.92926 0.85446 0.92062 0.89159 0.89865 0.93322 0.91008 0.91224 0.92500 0.91603 0.92363 0.92485 0.92571 0.91234 0.90961 0.91487 0.91146 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.72 37.16 0.36 -2.41 16 2 C -0.11 -2.52 5.44 -26.73 -0.15 -2.66 16 3 C 0.22 5.17 2.02 -68.86 -0.14 5.03 16 4 H 0.03 0.77 7.31 -51.93 -0.38 0.39 16 5 C -0.54 -13.99 7.25 -34.44 -0.25 -14.24 16 6 H 0.06 1.42 6.97 -52.48 -0.37 1.06 16 7 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 8 N -0.88 -24.55 11.30 55.43 0.63 -23.92 16 9 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.68 -13.86 5.52 -100.76 -0.56 -14.42 16 14 C 0.10 1.78 2.25 -67.53 -0.15 1.63 16 15 H 0.07 1.35 5.82 -51.93 -0.30 1.04 16 16 C -0.18 -3.15 5.03 -26.58 -0.13 -3.29 16 17 C 0.06 0.93 6.51 37.21 0.24 1.18 16 18 O -0.37 -5.61 8.92 -35.23 -0.31 -5.93 16 19 C 0.12 1.68 0.68 -90.58 -0.06 1.62 16 20 C -0.15 -1.91 4.03 -26.74 -0.11 -2.02 16 21 C -0.12 -1.33 5.78 -26.73 -0.15 -1.48 16 22 C -0.12 -1.19 5.93 -26.72 -0.16 -1.35 16 23 C -0.12 -1.23 5.78 -26.73 -0.15 -1.38 16 24 C -0.10 -1.19 4.94 -26.74 -0.13 -1.32 16 25 C -0.13 -1.97 4.53 -26.58 -0.12 -2.09 16 26 H 0.05 0.93 7.84 -51.93 -0.41 0.52 16 27 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.09 2.35 6.00 -51.93 -0.31 2.04 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.33 6.75 7.97 -39.29 -0.31 6.43 16 33 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 34 H 0.09 1.80 6.49 -51.93 -0.34 1.46 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.05 0.72 6.35 -51.93 -0.33 0.39 16 37 H 0.07 1.04 4.98 -51.93 -0.26 0.78 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.81 7.69 -51.93 -0.40 0.41 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.82 7.69 -51.93 -0.40 0.42 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 48 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 349.13 15.07 5.26 5.26 Total: -1.00 -26.31 349.13 -10.06 -36.37 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -8.85 Total: 7.99 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -1.20 Total: -21.09 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.07 Total: -38.35 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.31 Total: -5.93 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -26.31 -10.06 -36.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894469595.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.841 kcal (2) G-P(sol) polarization free energy of solvation -26.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds