Wall clock time and date at job start Tue Mar 31 2020 05:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47104 * 2 1 4 4 C 1.53002 * 109.47544 * 293.33419 * 3 2 1 5 5 C 1.53002 * 109.47040 * 173.32908 * 3 2 1 6 6 N 1.46509 * 109.46728 * 53.33568 * 3 2 1 7 7 C 1.46498 * 119.99591 * 234.08481 * 6 3 2 8 8 C 1.50703 * 109.47142 * 274.96516 * 7 6 3 9 9 H 1.07995 * 119.99936 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00082 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99630 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 119.99975 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47236 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47435 * 119.99543 * 12 10 8 15 15 H 1.48509 * 109.46795 * 239.99409 * 12 10 8 16 16 C 1.34773 * 119.99984 * 53.81208 * 6 3 2 17 17 O 1.21281 * 119.99642 * 172.83241 * 16 6 3 18 18 C 1.50702 * 120.00175 * 352.82508 * 16 6 3 19 19 C 1.52996 * 109.46789 * 162.83545 * 18 16 6 20 20 C 1.53006 * 109.46913 * 180.02562 * 19 18 16 21 21 C 1.52998 * 115.55115 * 34.32606 * 20 19 18 22 22 C 1.53009 * 117.49513 * 248.62158 * 20 19 18 23 23 C 1.52993 * 117.49996 * 179.97438 * 20 19 18 24 24 H 1.09002 * 109.47298 * 65.13778 * 1 2 3 25 25 H 1.08999 * 109.46997 * 185.13508 * 1 2 3 26 26 H 1.09001 * 109.47588 * 305.13667 * 1 2 3 27 27 H 1.09002 * 109.47087 * 240.00610 * 2 1 3 28 28 H 1.08999 * 109.47450 * 120.00416 * 2 1 3 29 29 H 1.08993 * 109.47027 * 184.41673 * 4 3 2 30 30 H 1.09002 * 109.46616 * 304.41738 * 4 3 2 31 31 H 1.09002 * 109.46602 * 64.41691 * 4 3 2 32 32 H 1.09001 * 109.47345 * 312.84758 * 5 3 2 33 33 H 1.09004 * 109.46857 * 72.85344 * 5 3 2 34 34 H 1.09004 * 109.47243 * 192.84579 * 5 3 2 35 35 H 1.09007 * 109.47348 * 34.96078 * 7 6 3 36 36 H 1.08997 * 109.46928 * 154.96287 * 7 6 3 37 37 H 0.97003 * 119.99467 * 180.02562 * 11 10 8 38 38 H 1.09001 * 109.46982 * 282.83438 * 18 16 6 39 39 H 1.08993 * 109.47094 * 42.83583 * 18 16 6 40 40 H 1.09001 * 109.47271 * 299.99716 * 19 18 16 41 41 H 1.08998 * 109.47306 * 60.00611 * 19 18 16 42 42 H 1.09003 * 109.46761 * 85.58290 * 21 20 19 43 43 H 1.09003 * 109.47395 * 205.58849 * 21 20 19 44 44 H 1.09007 * 109.46831 * 325.58871 * 21 20 19 45 45 H 1.08994 * 117.49952 * 0.02562 * 22 20 19 46 46 H 1.09000 * 117.49641 * 145.02147 * 22 20 19 47 47 H 1.08996 * 117.50346 * 214.97904 * 23 20 19 48 48 H 1.09001 * 117.49978 * 0.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6713 2.1139 -1.3245 5 6 3.5607 1.4457 0.1676 6 7 1.4250 2.1778 1.1080 7 6 0.7140 3.4323 0.8494 8 6 1.6987 4.5730 0.8301 9 1 2.7490 4.3826 0.9945 10 6 1.2586 5.8599 0.6037 11 7 -0.0204 6.0918 0.4039 12 14 2.4792 7.2737 0.5791 13 1 3.8468 6.7513 0.8281 14 1 2.4376 7.9407 -0.7470 15 1 2.1235 8.2531 1.6372 16 6 1.5087 1.6972 2.3644 17 8 1.1156 2.3658 3.2968 18 6 2.0907 0.3291 2.6107 19 6 2.4665 0.1931 4.0875 20 6 3.0580 -1.1957 4.3374 21 6 3.8832 -1.7781 3.1882 22 6 2.2373 -2.1711 5.1836 23 6 3.4997 -1.5291 5.7637 24 1 -0.3634 0.4321 -0.9324 25 1 -0.3633 -1.0235 0.0920 26 1 -0.3634 0.5914 0.8404 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 2.1018 3.1147 -1.3567 30 1 2.0628 1.5230 -2.1526 31 1 0.5866 2.1821 -1.4076 32 1 3.8379 0.7774 0.9828 33 1 4.0288 1.1057 -0.7563 34 1 3.8990 2.4566 0.3955 35 1 0.2093 3.3718 -0.1149 36 1 -0.0223 3.6012 1.6350 37 1 -0.3300 6.9971 0.2442 38 1 1.3538 -0.4312 2.3518 39 1 2.9807 0.1968 1.9956 40 1 3.2035 0.9534 4.3464 41 1 1.5765 0.3254 4.7026 42 1 4.9106 -1.4213 3.2615 43 1 3.8713 -2.8664 3.2475 44 1 3.4556 -1.4612 2.2369 45 1 1.2759 -1.8236 5.5618 46 1 2.2851 -3.2281 4.9216 47 1 4.3777 -2.1639 5.8833 48 1 3.3686 -0.7593 6.5242 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000904679079.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:25 Heat of formation + Delta-G solvation = -10.233879 kcal Electronic energy + Delta-G solvation = -24188.967839 eV Core-core repulsion = 21052.115860 eV Total energy + Delta-G solvation = -3136.851978 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.06185 -38.21818 -36.64901 -33.50327 -32.05535 -31.47796 -30.06684 -28.45364 -27.88411 -26.33474 -24.51118 -23.15759 -22.49298 -22.26301 -20.36393 -18.71137 -17.88850 -16.49552 -15.85604 -15.49725 -15.37405 -14.90743 -14.54481 -14.27203 -14.20819 -13.65411 -13.47038 -12.84762 -12.78261 -12.63233 -12.27565 -12.11540 -12.01867 -11.97251 -11.77059 -11.56807 -11.40548 -11.31806 -11.14355 -11.03469 -10.95812 -10.63244 -10.53023 -10.38629 -10.36306 -10.15423 -10.01790 -9.70586 -9.51796 -9.46586 -8.76145 -8.37824 -7.52080 -5.99467 -4.02654 3.31194 3.39147 3.42188 3.53188 3.72211 3.99211 4.47892 4.67447 4.75408 4.91361 4.96392 5.04238 5.25376 5.29703 5.34588 5.36818 5.47413 5.49243 5.59785 5.60831 5.72442 5.76150 5.82138 5.86061 5.87062 5.94035 6.05485 6.06617 6.10454 6.13957 6.14770 6.21373 6.35234 6.37036 6.39072 6.43407 6.52738 6.57886 6.73648 6.96015 7.22755 7.52413 7.67619 7.97988 8.31415 8.57762 8.97928 9.22102 9.61869 11.08367 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018596 B = 0.005256 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.354276 B = 5325.511480 C = 5944.334234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.158 4.158 3 C 0.171 3.829 4 C -0.147 4.147 5 C -0.167 4.167 6 N -0.587 5.587 7 C 0.242 3.758 8 C -0.516 4.516 9 H 0.057 0.943 10 C 0.060 3.940 11 N -0.895 5.895 12 Si 0.893 3.107 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.284 1.284 16 C 0.506 3.494 17 O -0.546 6.546 18 C -0.156 4.156 19 C -0.070 4.070 20 C -0.124 4.124 21 C -0.123 4.123 22 C -0.177 4.177 23 C -0.178 4.178 24 H 0.055 0.945 25 H 0.046 0.954 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.037 0.963 36 H 0.039 0.961 37 H 0.261 0.739 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.068 0.932 45 H 0.093 0.907 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.062 -17.272 0.694 18.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.195 4.195 3 C 0.085 3.915 4 C -0.204 4.204 5 C -0.225 4.225 6 N -0.318 5.318 7 C 0.123 3.877 8 C -0.555 4.555 9 H 0.075 0.925 10 C -0.142 4.142 11 N -0.535 5.535 12 Si 0.721 3.279 13 H -0.199 1.199 14 H -0.211 1.211 15 H -0.210 1.210 16 C 0.293 3.707 17 O -0.424 6.424 18 C -0.195 4.195 19 C -0.107 4.107 20 C -0.124 4.124 21 C -0.180 4.180 22 C -0.214 4.214 23 C -0.215 4.215 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.119 0.881 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.111 0.889 46 H 0.108 0.892 47 H 0.109 0.891 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.710 -16.740 1.124 17.723 hybrid contribution 0.618 0.891 -0.064 1.086 sum 6.328 -15.849 1.061 17.099 Atomic orbital electron populations 1.21748 0.95548 1.00682 1.02757 1.22577 0.97052 0.96800 1.03119 1.20250 0.92053 0.90744 0.88494 1.22057 1.02449 1.02031 0.93874 1.22485 0.95615 1.03194 1.01198 1.48309 1.53892 1.24555 1.05091 1.19326 0.92342 0.78656 0.97413 1.21459 0.94240 0.91695 1.48093 0.92509 1.24921 0.95154 0.98634 0.95441 1.69944 1.13438 1.20930 1.49175 0.86521 0.81446 0.82462 0.77456 1.19879 1.21085 1.21013 1.20310 0.79548 0.87649 0.83152 1.90656 1.49525 1.60191 1.42073 1.22512 1.02538 0.96369 0.98074 1.20921 1.00855 0.93189 0.95763 1.21559 1.02067 0.96511 0.92261 1.21501 0.99252 0.99811 0.97397 1.23163 0.95800 0.98030 1.04444 1.23012 0.98366 1.03569 0.96559 0.92574 0.93481 0.92177 0.91565 0.89871 0.90068 0.93059 0.91799 0.92442 0.92223 0.91122 0.94473 0.94288 0.92931 0.88837 0.88116 0.91334 0.90909 0.92252 0.92745 0.91304 0.88854 0.89168 0.89117 0.88856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.14 37.15 0.34 -1.74 16 2 C -0.16 -2.05 4.31 -26.73 -0.12 -2.17 16 3 C 0.17 2.77 0.72 -131.81 -0.09 2.67 16 4 C -0.15 -2.45 6.90 37.16 0.26 -2.19 16 5 C -0.17 -2.47 8.40 37.16 0.31 -2.15 16 6 N -0.59 -12.13 1.49 -160.17 -0.24 -12.37 16 7 C 0.24 6.21 4.56 -5.19 -0.02 6.18 16 8 C -0.52 -14.35 8.57 -34.44 -0.29 -14.64 16 9 H 0.06 1.59 7.52 -52.49 -0.39 1.20 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 12 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 13 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 16 C 0.51 10.48 6.45 -10.99 -0.07 10.41 16 17 O -0.55 -13.88 15.59 5.56 0.09 -13.80 16 18 C -0.16 -2.33 2.43 -27.88 -0.07 -2.40 16 19 C -0.07 -1.01 4.83 -26.73 -0.13 -1.14 16 20 C -0.12 -1.41 2.47 -154.51 -0.38 -1.79 16 21 C -0.12 -1.19 9.49 37.16 0.35 -0.84 16 22 C -0.18 -1.83 9.83 -26.70 -0.26 -2.09 16 23 C -0.18 -1.85 9.97 -26.71 -0.27 -2.11 16 24 H 0.06 0.78 6.97 -51.93 -0.36 0.42 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.99 6.72 -51.93 -0.35 0.65 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 0.99 3.38 -51.93 -0.18 0.82 16 29 H 0.08 1.58 7.15 -51.93 -0.37 1.21 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 1.12 5.65 -51.93 -0.29 0.83 16 32 H 0.06 0.75 5.11 -51.93 -0.27 0.49 16 33 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 34 H 0.07 1.24 7.85 -51.93 -0.41 0.83 16 35 H 0.04 0.96 5.82 -51.93 -0.30 0.66 16 36 H 0.04 1.16 7.38 -51.93 -0.38 0.77 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.09 1.27 6.35 -51.93 -0.33 0.94 16 39 H 0.10 1.34 1.99 -51.93 -0.10 1.24 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.07 1.16 7.68 -51.93 -0.40 0.76 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.05 0.46 7.90 -51.93 -0.41 0.05 16 44 H 0.07 0.66 5.31 -51.93 -0.28 0.38 16 45 H 0.09 0.99 8.05 -51.93 -0.42 0.57 16 46 H 0.09 0.81 8.05 -51.93 -0.42 0.39 16 47 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 357.01 15.07 5.38 5.38 Total: -1.00 -31.60 357.01 -7.77 -39.37 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -8.17 Total: 2.70 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -0.54 Total: -12.39 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.50 Total: -38.13 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.09 Total: -13.80 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.60 -7.77 -39.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904679079.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.134 kcal (2) G-P(sol) polarization free energy of solvation -31.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds