Wall clock time and date at job start Tue Mar 31 2020 05:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53003 * 109.46942 * 2 1 4 4 H 1.08997 * 109.47968 * 305.01494 * 3 2 1 5 5 C 1.53098 * 109.48083 * 184.99985 * 3 2 1 6 6 C 1.53179 * 109.15960 * 297.61038 * 5 3 2 7 7 H 1.09003 * 109.54440 * 62.97653 * 6 5 3 8 8 N 1.46900 * 109.54165 * 183.15150 * 6 5 3 9 9 C 1.46898 * 111.00132 * 303.62764 * 8 6 5 10 10 C 1.50700 * 109.47221 * 174.30798 * 9 8 6 11 11 H 1.08002 * 119.99843 * 354.96668 * 10 9 8 12 12 C 1.37875 * 120.00044 * 174.96916 * 10 9 8 13 13 N 1.31513 * 120.00252 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00247 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47422 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.47014 * 59.99653 * 14 12 10 17 17 H 1.48503 * 109.46945 * 300.00042 * 14 12 10 18 18 C 1.46906 * 111.00125 * 179.67858 * 8 6 5 19 19 C 1.54268 * 110.03051 * 25.82046 * 18 8 6 20 20 C 1.54891 * 104.19636 * 217.10639 * 19 18 8 21 21 C 1.54887 * 102.74536 * 37.94699 * 20 19 18 22 22 C 1.53875 * 110.03126 * 268.65857 * 18 8 6 23 23 C 1.53177 * 109.11225 * 303.06258 * 6 5 3 24 24 C 1.53101 * 109.15504 * 56.84863 * 23 6 5 25 25 O 1.42899 * 109.49425 * 65.04970 * 3 2 1 26 26 H 1.09004 * 109.47786 * 300.00136 * 1 2 3 27 27 H 1.09001 * 109.47594 * 60.00279 * 1 2 3 28 28 H 1.09005 * 109.47398 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47410 * 239.99445 * 2 1 3 30 30 H 1.09005 * 109.47353 * 119.99291 * 2 1 3 31 31 H 1.08995 * 109.52479 * 177.70958 * 5 3 2 32 32 H 1.09005 * 109.57428 * 57.54564 * 5 3 2 33 33 H 1.09005 * 109.46844 * 54.31225 * 9 8 6 34 34 H 1.08999 * 109.47427 * 294.30880 * 9 8 6 35 35 H 0.97003 * 119.99868 * 359.97438 * 13 12 10 36 36 H 1.09000 * 110.02042 * 147.26655 * 18 8 6 37 37 H 1.08994 * 110.48808 * 335.78658 * 19 18 8 38 38 H 1.09004 * 110.48581 * 98.42839 * 19 18 8 39 39 H 1.08996 * 110.75801 * 279.62823 * 20 19 18 40 40 H 1.09001 * 110.75505 * 156.26067 * 20 19 18 41 41 H 1.09004 * 110.48616 * 203.37938 * 21 20 19 42 42 H 1.08994 * 110.49128 * 80.73540 * 21 20 19 43 43 H 1.09001 * 110.02921 * 238.56764 * 22 18 8 44 44 H 1.09005 * 110.02839 * 359.97438 * 22 18 8 45 45 H 1.09000 * 109.52096 * 176.84250 * 23 6 5 46 46 H 1.08994 * 109.52173 * 297.03546 * 23 6 5 47 47 H 1.09003 * 109.48684 * 182.49776 * 24 23 6 48 48 H 1.09006 * 109.42009 * 62.51354 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6051 1.9818 -0.8416 5 6 3.5657 1.4447 -0.1258 6 6 4.1714 0.7378 1.0907 7 1 3.8516 -0.3042 1.1036 8 7 5.6371 0.8011 1.0164 9 6 6.1259 0.2229 -0.2425 10 6 7.6149 0.4306 -0.3459 11 1 8.1325 1.0111 0.4034 12 6 8.3165 -0.1204 -1.3972 13 7 7.6861 -0.8268 -2.3100 14 14 10.1621 0.1376 -1.5259 15 1 10.6752 -0.5523 -2.7366 16 1 10.8252 -0.4208 -0.3202 17 1 10.4532 1.5906 -1.6227 18 6 6.2521 0.1379 2.1740 19 6 5.2961 -0.9329 2.7389 20 6 5.4969 -0.8503 4.2726 21 6 5.6644 0.6705 4.5138 22 6 6.4863 1.1574 3.3025 23 6 3.6924 1.4367 2.3668 24 6 2.1616 1.4368 2.3952 25 8 1.6631 2.0815 1.2214 26 1 -0.3635 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 3.9264 2.4724 -0.1668 32 1 3.8579 0.9195 -1.0352 33 1 5.6318 0.7111 -1.0825 34 1 5.9058 -0.8444 -0.2617 35 1 6.7277 -0.9605 -2.2434 36 1 7.1973 -0.3204 1.8828 37 1 4.2643 -0.7000 2.4762 38 1 5.5706 -1.9216 2.3710 39 1 6.3942 -1.3905 4.5744 40 1 4.6208 -1.2305 4.7979 41 1 6.2077 0.8520 5.4412 42 1 4.6921 1.1624 4.5377 43 1 7.5450 1.1932 3.5596 44 1 6.1440 2.1443 2.9910 45 1 4.0742 0.9051 3.2384 46 1 4.0556 2.4642 2.3776 47 1 1.8144 1.9718 3.2791 48 1 1.7997 0.4090 2.4269 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170217519.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:17 Heat of formation + Delta-G solvation = -40.820080 kcal Electronic energy + Delta-G solvation = -24698.593165 eV Core-core repulsion = 21560.414869 eV Total energy + Delta-G solvation = -3138.178296 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.48043 -38.33863 -35.07067 -33.30785 -33.03504 -31.25650 -29.93514 -28.41227 -27.34390 -25.81330 -23.84557 -23.53456 -22.10303 -21.67317 -20.33517 -19.21171 -18.52088 -16.69544 -16.36921 -16.04251 -15.71833 -15.35994 -14.67197 -14.21803 -13.74898 -13.67687 -13.59472 -13.33633 -13.07601 -12.87020 -12.53235 -12.34312 -12.04136 -11.87436 -11.52575 -11.36472 -11.09581 -10.95384 -10.89217 -10.81639 -10.75734 -10.73442 -10.67793 -10.47136 -10.09856 -9.98106 -9.87847 -9.72760 -9.62539 -9.14277 -8.62342 -8.36420 -7.24486 -6.36380 -4.04775 3.43845 3.45968 3.64382 4.01477 4.49732 4.66002 4.83367 4.98725 5.03315 5.04579 5.07912 5.14189 5.24889 5.32875 5.38571 5.41384 5.52453 5.60965 5.68464 5.77091 5.77722 5.80308 5.88907 5.91147 5.95465 5.98622 5.99756 6.09411 6.14013 6.18212 6.22194 6.27353 6.31522 6.40902 6.46363 6.53054 6.61258 6.67858 6.75549 6.90821 7.07300 7.16906 7.40603 7.87371 8.07121 8.37311 8.60545 8.88316 9.65464 11.02352 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015339 B = 0.006343 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.946644 B = 4413.070176 C = 5622.596719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.159 4.159 3 C 0.094 3.906 4 H 0.098 0.902 5 C -0.143 4.143 6 C 0.083 3.917 7 H 0.040 0.960 8 N -0.517 5.517 9 C 0.180 3.820 10 C -0.587 4.587 11 H 0.056 0.944 12 C 0.014 3.986 13 N -0.915 5.915 14 Si 1.070 2.930 15 H -0.283 1.283 16 H -0.289 1.289 17 H -0.287 1.287 18 C 0.087 3.913 19 C -0.173 4.173 20 C -0.121 4.121 21 C -0.134 4.134 22 C -0.114 4.114 23 C -0.175 4.175 24 C 0.058 3.942 25 O -0.378 6.378 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.024 0.976 34 H -0.022 1.022 35 H 0.266 0.734 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.073 0.927 45 H 0.101 0.899 46 H 0.075 0.925 47 H 0.087 0.913 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.003 1.621 10.579 15.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.197 4.197 3 C 0.036 3.964 4 H 0.116 0.884 5 C -0.181 4.181 6 C -0.025 4.025 7 H 0.058 0.942 8 N -0.240 5.240 9 C 0.054 3.946 10 C -0.625 4.625 11 H 0.075 0.925 12 C -0.189 4.189 13 N -0.551 5.551 14 Si 0.898 3.102 15 H -0.209 1.209 16 H -0.215 1.215 17 H -0.214 1.214 18 C -0.022 4.022 19 C -0.211 4.211 20 C -0.159 4.159 21 C -0.171 4.171 22 C -0.152 4.152 23 C -0.212 4.212 24 C -0.019 4.019 25 O -0.297 6.297 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.041 0.959 34 H -0.004 1.004 35 H 0.076 0.924 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.119 0.881 46 H 0.093 0.907 47 H 0.105 0.895 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.622 1.938 9.633 13.752 hybrid contribution -1.307 -0.815 0.813 1.742 sum -10.929 1.123 10.445 15.160 Atomic orbital electron populations 1.21694 0.95470 1.01101 1.02052 1.22201 0.96539 0.97894 1.03041 1.22235 0.94324 0.92689 0.87183 0.88399 1.22313 0.94047 1.02630 0.99122 1.21641 0.90320 0.96549 0.94016 0.94237 1.62281 1.02485 1.55810 1.03455 1.19893 0.96473 0.91581 0.86614 1.21974 0.92251 1.35888 1.12406 0.92528 1.25805 1.06666 0.93798 0.92641 1.70801 1.11343 1.37976 1.34994 0.83526 0.74366 0.76244 0.76060 1.20891 1.21542 1.21387 1.22266 0.98173 0.91522 0.90223 1.23426 1.02118 1.00133 0.95471 1.22425 1.00836 0.96404 0.96206 1.22615 1.00218 0.95888 0.98359 1.22269 0.99093 1.00142 0.93722 1.22979 0.95239 1.03009 0.99960 1.22584 0.93905 0.97302 0.88082 1.87919 1.74689 1.53317 1.13727 0.92392 0.92828 0.93139 0.90980 0.91357 0.90520 0.90623 0.95850 1.00394 0.92384 0.88906 0.89734 0.92479 0.91778 0.92439 0.92344 0.91089 0.92434 0.90833 0.88136 0.90679 0.89526 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.81 37.15 0.36 -1.24 16 2 C -0.16 -2.06 4.74 -26.74 -0.13 -2.18 16 3 C 0.09 1.33 3.29 -26.68 -0.09 1.25 16 4 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 5 C -0.14 -2.44 4.48 -26.59 -0.12 -2.56 16 6 C 0.08 1.44 1.13 -67.53 -0.08 1.37 16 7 H 0.04 0.71 4.63 -51.93 -0.24 0.47 16 8 N -0.52 -10.76 4.19 -218.59 -0.92 -11.67 16 9 C 0.18 4.53 3.74 -4.98 -0.02 4.51 16 10 C -0.59 -16.37 7.93 -34.44 -0.27 -16.64 16 11 H 0.06 1.59 7.49 -52.49 -0.39 1.20 16 12 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 13 N -0.91 -27.65 13.65 55.43 0.76 -26.89 16 14 Si 1.07 25.30 29.90 -169.99 -5.08 20.22 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 18 C 0.09 1.66 2.62 -66.59 -0.17 1.49 16 19 C -0.17 -2.81 5.38 -25.07 -0.13 -2.94 16 20 C -0.12 -1.60 6.75 -24.74 -0.17 -1.77 16 21 C -0.13 -1.73 6.12 -25.07 -0.15 -1.88 16 22 C -0.11 -1.85 5.74 -25.61 -0.15 -2.00 16 23 C -0.17 -2.56 3.56 -26.59 -0.09 -2.66 16 24 C 0.06 0.76 6.51 37.21 0.24 1.00 16 25 O -0.38 -5.53 10.14 -35.23 -0.36 -5.89 16 26 H 0.06 0.65 7.83 -51.93 -0.41 0.24 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.91 4.98 -51.93 -0.26 0.65 16 31 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 32 H 0.08 1.40 6.43 -51.93 -0.33 1.07 16 33 H 0.02 0.62 6.00 -51.93 -0.31 0.31 16 34 H -0.02 -0.58 7.81 -51.93 -0.41 -0.99 16 35 H 0.27 8.01 7.19 -40.82 -0.29 7.72 16 36 H 0.09 2.09 6.53 -51.93 -0.34 1.75 16 37 H 0.08 1.33 3.62 -51.93 -0.19 1.14 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.86 5.89 -51.93 -0.31 0.55 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.07 1.25 6.97 -51.93 -0.36 0.89 16 45 H 0.10 1.38 1.88 -51.93 -0.10 1.29 16 46 H 0.07 1.20 7.67 -51.93 -0.40 0.80 16 47 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 48 H 0.05 0.57 6.24 -51.93 -0.32 0.25 16 LS Contribution 337.16 15.07 5.08 5.08 Total: -1.00 -29.55 337.16 -9.69 -39.23 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -8.10 Total: 3.86 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: -1.06 Total: -23.94 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: -0.16 Total: -38.56 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.36 Total: -5.89 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.08 Total: 20.22 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.55 -9.69 -39.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170217519.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.587 kcal (2) G-P(sol) polarization free energy of solvation -29.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds