Wall clock time and date at job start Tue Mar 31 2020 05:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46713 * 2 1 4 4 C 1.52996 * 109.47374 * 120.00325 * 2 1 3 5 5 H 1.09002 * 109.50758 * 300.00305 * 4 2 1 6 6 C 1.53098 * 109.54074 * 179.89273 * 4 2 1 7 7 N 1.47016 * 109.25721 * 183.19574 * 6 4 2 8 8 C 1.46903 * 111.00220 * 182.39206 * 7 6 4 9 9 C 1.53005 * 109.46912 * 52.40994 * 8 7 6 10 10 C 1.53001 * 109.47121 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.46849 * 59.99915 * 10 9 8 12 12 C 1.50697 * 109.47282 * 60.00349 * 11 10 9 13 13 H 1.07998 * 119.99946 * 239.99822 * 12 11 10 14 14 C 1.37881 * 120.00149 * 59.99361 * 12 11 10 15 15 N 1.31522 * 119.99496 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00231 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46756 * 90.00207 * 16 14 12 18 18 H 1.48490 * 109.47314 * 209.99941 * 16 14 12 19 19 H 1.48495 * 109.47100 * 330.00577 * 16 14 12 20 20 C 1.52995 * 109.47446 * 299.99959 * 11 10 9 21 21 C 1.53000 * 109.46963 * 292.41425 * 8 7 6 22 22 C 1.47012 * 110.75072 * 58.61755 * 7 6 4 23 23 C 1.53094 * 109.25795 * 301.38161 * 22 7 6 24 24 O 1.43011 * 109.25780 * 56.85277 * 23 22 7 25 25 H 1.09002 * 109.46944 * 299.98930 * 1 2 3 26 26 H 1.08994 * 109.47225 * 59.99700 * 1 2 3 27 27 H 1.09001 * 109.46767 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46944 * 240.01070 * 2 1 3 29 29 H 1.09002 * 109.46542 * 60.00824 * 3 2 1 30 30 H 1.09003 * 109.46899 * 179.97438 * 3 2 1 31 31 H 1.08990 * 109.47774 * 300.00570 * 3 2 1 32 32 H 1.08996 * 109.50862 * 303.12705 * 6 4 2 33 33 H 1.09003 * 109.50840 * 63.26440 * 6 4 2 34 34 H 1.08996 * 109.47592 * 172.40874 * 8 7 6 35 35 H 1.09001 * 109.47336 * 300.00156 * 9 8 7 36 36 H 1.08997 * 109.46863 * 60.00035 * 9 8 7 37 37 H 1.09001 * 109.46966 * 300.00166 * 10 9 8 38 38 H 1.09000 * 109.46683 * 180.02562 * 10 9 8 39 39 H 1.09005 * 109.46752 * 180.02562 * 11 10 9 40 40 H 0.97002 * 119.99530 * 179.97438 * 15 14 12 41 41 H 1.09005 * 109.47025 * 300.00740 * 20 11 10 42 42 H 1.08997 * 109.47507 * 180.02562 * 20 11 10 43 43 H 1.08997 * 109.46927 * 299.99251 * 21 8 7 44 44 H 1.09001 * 109.47320 * 59.99823 * 21 8 7 45 45 H 1.09005 * 109.50656 * 181.44976 * 22 7 6 46 46 H 1.08996 * 109.51204 * 61.32056 * 22 7 6 47 47 H 1.09000 * 109.50980 * 296.91481 * 23 22 7 48 48 H 1.09006 * 109.54499 * 176.81139 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6770 -0.2080 2.1396 6 6 3.5710 -0.7245 1.2493 7 7 4.0542 -1.4848 2.4112 8 6 5.5214 -1.4646 2.4805 9 6 6.0153 -0.0180 2.4135 10 6 7.5435 0.0029 2.4850 11 6 8.1199 -0.7879 1.3089 12 6 7.6691 -0.1626 0.0140 13 1 7.0883 -0.7393 -0.6907 14 6 7.9979 1.1457 -0.2712 15 7 8.7055 1.8478 0.5869 16 14 7.4397 1.9205 -1.8765 17 1 6.1120 2.5572 -1.6835 18 1 8.4247 2.9483 -2.2990 19 1 7.3384 0.8721 -2.9233 20 6 7.6261 -2.2344 1.3759 21 6 6.0984 -2.2555 1.3047 22 6 3.5472 -2.8643 2.3784 23 6 2.0165 -2.8396 2.3669 24 8 1.5656 -2.0704 1.2488 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.6766 1.9563 0.8901 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9565 -0.8898 32 1 3.9342 -1.1902 0.3332 33 1 3.9372 0.3005 1.3073 34 1 5.8472 -1.9167 3.4173 35 1 5.6895 0.4341 1.4767 36 1 5.6042 0.5454 3.2511 37 1 7.8696 -0.4493 3.4216 38 1 7.8953 1.0335 2.4377 39 1 9.2087 -0.7733 1.3601 40 1 8.9372 2.7681 0.3861 41 1 7.9522 -2.6866 2.3126 42 1 8.0371 -2.7979 0.5383 43 1 5.7466 -3.2860 1.3525 44 1 5.7726 -1.8034 0.3679 45 1 3.8959 -3.4013 3.2606 46 1 3.9099 -3.3642 1.4804 47 1 1.6527 -2.3880 3.2899 48 1 1.6359 -3.8578 2.2855 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173337085.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:25 Heat of formation + Delta-G solvation = -65.995417 kcal Electronic energy + Delta-G solvation = -24555.375277 eV Core-core repulsion = 21416.105297 eV Total energy + Delta-G solvation = -3139.269980 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.99551 -37.84678 -35.40562 -34.68559 -32.07170 -30.37274 -29.46623 -28.91691 -27.14106 -25.80706 -24.45440 -24.01858 -21.90438 -21.03658 -20.04487 -19.63874 -18.42014 -16.44892 -16.17721 -15.78653 -14.99671 -14.71659 -14.52937 -14.44189 -14.10699 -13.77333 -13.48185 -13.19120 -13.15251 -12.76348 -12.51880 -12.10727 -11.97096 -11.75018 -11.46445 -11.33400 -11.11462 -11.05598 -10.96399 -10.89627 -10.80489 -10.64660 -10.53403 -10.29278 -10.13359 -9.99730 -9.56053 -9.35452 -9.24009 -8.86787 -8.63096 -8.27187 -7.81248 -5.96486 -4.00744 3.27997 3.36248 3.39062 3.83194 4.17956 4.43843 4.86225 4.99790 5.13717 5.19472 5.31152 5.33876 5.38689 5.42176 5.52137 5.62615 5.68826 5.71093 5.78143 5.81968 5.89899 5.91947 6.00195 6.02641 6.10815 6.17419 6.23618 6.28565 6.40540 6.42591 6.46599 6.52993 6.62011 6.69638 6.77960 6.84546 7.07571 7.13618 7.30849 7.37138 7.47323 7.52315 7.59979 7.75739 7.95728 8.17529 8.49752 9.01458 9.62241 11.09336 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015398 B = 0.006864 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.006131 B = 4078.075321 C = 5338.459543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 C -0.151 4.151 4 C 0.100 3.900 5 H 0.062 0.938 6 C 0.019 3.981 7 N -0.532 5.532 8 C 0.091 3.909 9 C -0.094 4.094 10 C -0.106 4.106 11 C 0.043 3.957 12 C -0.499 4.499 13 H 0.052 0.948 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.880 3.120 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.102 4.102 21 C -0.136 4.136 22 C 0.013 3.987 23 C 0.067 3.933 24 O -0.384 6.384 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.014 0.986 38 H 0.092 0.908 39 H 0.024 0.976 40 H 0.258 0.742 41 H 0.032 0.968 42 H 0.043 0.957 43 H 0.036 0.964 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.046 0.954 47 H 0.053 0.947 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.079 -5.187 2.962 14.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.107 4.107 3 C -0.208 4.208 4 C 0.042 3.958 5 H 0.080 0.920 6 C -0.109 4.109 7 N -0.256 5.256 8 C -0.016 4.016 9 C -0.132 4.132 10 C -0.145 4.145 11 C 0.025 3.975 12 C -0.537 4.537 13 H 0.070 0.930 14 C -0.138 4.138 15 N -0.529 5.529 16 Si 0.708 3.292 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.141 4.141 21 C -0.175 4.175 22 C -0.115 4.115 23 C -0.010 4.010 24 O -0.303 6.303 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.057 0.943 37 H 0.032 0.968 38 H 0.110 0.890 39 H 0.042 0.958 40 H 0.068 0.932 41 H 0.051 0.949 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.089 0.911 45 H 0.097 0.903 46 H 0.064 0.936 47 H 0.072 0.928 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.309 -4.852 3.274 14.539 hybrid contribution 0.320 0.104 -1.388 1.428 sum -12.990 -4.747 1.886 13.958 Atomic orbital electron populations 1.21741 0.94784 1.02053 1.01160 1.21080 0.96238 0.95942 0.97432 1.21889 1.02175 0.94853 1.01898 1.22237 0.92890 0.82758 0.97935 0.92036 1.22909 0.94448 1.00754 0.92797 1.62581 1.10836 1.11626 1.40538 1.21774 0.84041 0.98383 0.97429 1.21487 0.97636 0.93021 1.01057 1.21503 0.92931 1.04072 0.95960 1.18696 0.95660 0.88943 0.94232 1.21110 1.33291 0.96635 1.02711 0.92975 1.24918 0.95262 0.97403 0.96256 1.69869 1.38549 1.09441 1.35057 0.86784 0.78539 0.79257 0.84632 1.20651 1.21317 1.20077 1.21484 0.94039 1.00080 0.98466 1.22041 0.97717 0.97685 1.00035 1.22766 0.95720 0.91456 1.01590 1.22592 0.93189 0.95740 0.89481 1.87914 1.72839 1.23344 1.46228 0.93012 0.92978 0.92075 0.90596 0.92466 0.91568 0.92280 0.93557 0.88578 0.91312 0.90882 0.94262 0.96763 0.88973 0.95817 0.93158 0.94881 0.93776 0.94501 0.91125 0.90325 0.93604 0.92849 0.89109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.05 37.16 0.34 -1.23 16 2 C -0.09 -1.14 2.72 -90.62 -0.25 -1.39 16 3 C -0.15 -1.91 8.85 37.16 0.33 -1.58 16 4 C 0.10 1.43 2.38 -26.68 -0.06 1.37 16 5 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 6 C 0.02 0.31 3.68 -3.71 -0.01 0.30 16 7 N -0.53 -8.71 4.78 -226.33 -1.08 -9.79 16 8 C 0.09 1.66 2.38 -67.71 -0.16 1.50 16 9 C -0.09 -1.94 4.50 -26.73 -0.12 -2.06 16 10 C -0.11 -2.44 5.23 -26.73 -0.14 -2.58 16 11 C 0.04 1.04 2.59 -91.78 -0.24 0.81 16 12 C -0.50 -13.05 6.61 -34.44 -0.23 -13.28 16 13 H 0.05 1.38 6.71 -52.49 -0.35 1.02 16 14 C 0.06 1.67 5.30 -17.81 -0.09 1.57 16 15 N -0.89 -24.78 11.32 55.43 0.63 -24.15 16 16 Si 0.88 20.85 29.54 -169.99 -5.02 15.83 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C -0.10 -2.12 5.41 -26.76 -0.14 -2.27 16 21 C -0.14 -2.59 4.24 -26.76 -0.11 -2.70 16 22 C 0.01 0.19 5.08 -3.71 -0.02 0.17 16 23 C 0.07 0.85 7.01 37.21 0.26 1.11 16 24 O -0.38 -5.61 9.80 -35.23 -0.35 -5.95 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.71 7.69 -51.93 -0.40 0.31 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.96 6.51 -51.93 -0.34 0.62 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.84 6.64 -51.93 -0.34 0.50 16 33 H 0.10 1.68 4.54 -51.93 -0.24 1.45 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.07 1.64 5.34 -51.93 -0.28 1.37 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 39 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.04 0.64 6.40 -51.93 -0.33 0.30 16 44 H 0.07 1.49 5.13 -51.93 -0.27 1.22 16 45 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.05 0.70 6.39 -51.93 -0.33 0.36 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 343.65 15.07 5.18 5.18 Total: -1.00 -26.98 343.65 -9.97 -36.95 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -8.67 Total: 2.21 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -0.66 Total: -20.28 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: -0.46 Total: -33.94 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.35 Total: -5.95 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -26.98 -9.97 -36.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337085.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.044 kcal (2) G-P(sol) polarization free energy of solvation -26.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds