Wall clock time and date at job start Tue Mar 31 2020 05:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47209 * 2 1 4 4 C 1.53001 * 109.46955 * 119.99706 * 2 1 3 5 5 H 1.09003 * 109.50702 * 59.91019 * 4 2 1 6 6 C 1.53093 * 109.50905 * 180.02562 * 4 2 1 7 7 N 1.47009 * 109.26071 * 176.78472 * 6 4 2 8 8 C 1.46894 * 111.00295 * 177.60644 * 7 6 4 9 9 C 1.53005 * 109.47480 * 182.58706 * 8 7 6 10 10 C 1.52998 * 109.47124 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.46843 * 60.00466 * 10 9 8 12 12 C 1.50709 * 109.46564 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99830 * 120.00266 * 12 11 10 14 14 C 1.37872 * 120.00227 * 299.99488 * 12 11 10 15 15 N 1.31512 * 119.99911 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00138 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46930 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47136 * 119.99895 * 16 14 12 19 19 H 1.48499 * 109.46877 * 240.00430 * 16 14 12 20 20 C 1.52995 * 109.46901 * 299.99285 * 11 10 9 21 21 C 1.53002 * 109.47140 * 60.00681 * 20 11 10 22 22 C 1.47016 * 110.75376 * 301.38357 * 7 6 4 23 23 C 1.53103 * 109.29298 * 58.59374 * 22 7 6 24 24 O 1.43015 * 109.50635 * 299.78683 * 4 2 1 25 25 H 1.08999 * 109.47712 * 300.00372 * 1 2 3 26 26 H 1.09004 * 109.46991 * 60.00104 * 1 2 3 27 27 H 1.08995 * 109.47388 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47050 * 239.99316 * 2 1 3 29 29 H 1.09004 * 109.47059 * 299.99855 * 3 2 1 30 30 H 1.09004 * 109.47524 * 59.99405 * 3 2 1 31 31 H 1.08998 * 109.47312 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.50838 * 56.84905 * 6 4 2 33 33 H 1.09005 * 109.53925 * 296.73782 * 6 4 2 34 34 H 1.09004 * 109.47422 * 302.59029 * 8 7 6 35 35 H 1.08997 * 109.47200 * 300.00243 * 9 8 7 36 36 H 1.08999 * 109.46604 * 59.99865 * 9 8 7 37 37 H 1.08997 * 109.47441 * 300.00293 * 10 9 8 38 38 H 1.09003 * 109.47111 * 179.97438 * 10 9 8 39 39 H 1.08997 * 109.47244 * 59.99705 * 11 10 9 40 40 H 0.96999 * 120.00403 * 179.97438 * 15 14 12 41 41 H 1.08997 * 109.47515 * 300.00254 * 20 11 10 42 42 H 1.09003 * 109.47122 * 180.02562 * 20 11 10 43 43 H 1.08993 * 109.47459 * 179.97438 * 21 20 11 44 44 H 1.08997 * 109.47265 * 59.99420 * 21 20 11 45 45 H 1.09002 * 109.50934 * 178.55099 * 22 7 6 46 46 H 1.09003 * 109.50733 * 298.63693 * 22 7 6 47 47 H 1.08998 * 109.50917 * 63.10882 * 23 22 7 48 48 H 1.08998 * 109.50376 * 183.24332 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6756 -1.7485 1.2507 6 6 3.5709 -0.7212 1.2505 7 7 4.0548 -1.3467 2.4898 8 6 5.5219 -1.4181 2.5054 9 6 5.9844 -2.1312 3.7776 10 6 7.5125 -2.2061 3.7934 11 6 8.0928 -0.7907 3.7626 12 6 9.5980 -0.8646 3.7788 13 1 10.1680 -0.4448 2.9632 14 6 10.2473 -1.4678 4.8350 15 7 9.5531 -1.9792 5.8280 16 14 12.1130 -1.5586 4.8554 17 1 12.6533 -0.9142 3.6316 18 1 12.6298 -0.8527 6.0553 19 1 12.5388 -2.9807 4.8958 20 6 7.6304 -0.0776 2.4904 21 6 6.1023 -0.0027 2.4745 22 6 3.5498 -0.6271 3.6682 23 6 2.0190 -0.6272 3.6433 24 8 1.5677 -0.0446 2.4175 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.1300 1.4425 0.0005 32 1 3.9349 0.3047 1.1945 33 1 3.9361 -1.2845 0.3918 34 1 5.8681 -1.9714 1.6323 35 1 5.6383 -1.5779 4.6505 36 1 5.5713 -3.1397 3.7993 37 1 7.8583 -2.7597 2.9204 38 1 7.8420 -2.7138 4.7000 39 1 7.7470 -0.2372 4.6356 40 1 10.0098 -2.4039 6.5709 41 1 7.9761 -0.6312 1.6174 42 1 8.0441 0.9306 2.4682 43 1 5.7728 0.5057 1.5684 44 1 5.7565 0.5508 3.3475 45 1 3.8991 -1.1222 4.5743 46 1 3.9141 0.4001 3.6512 47 1 1.6538 -1.6516 3.7152 48 1 1.6414 -0.0455 4.4842 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173337086.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:27 Heat of formation + Delta-G solvation = -68.851284 kcal Electronic energy + Delta-G solvation = -23758.507640 eV Core-core repulsion = 20619.113820 eV Total energy + Delta-G solvation = -3139.393820 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.13375 -37.93096 -35.38293 -34.73654 -32.28948 -30.34852 -29.76833 -29.05334 -27.31173 -26.32374 -24.21491 -23.91216 -22.05869 -21.32963 -19.90088 -19.67978 -18.43317 -16.51921 -16.27870 -16.07974 -15.27280 -14.96894 -14.69055 -14.36591 -14.21585 -14.01309 -13.73597 -13.29277 -12.98641 -12.84179 -12.53839 -12.23709 -12.17393 -11.83481 -11.77251 -11.48309 -11.27596 -11.17857 -11.00112 -10.87966 -10.82180 -10.75548 -10.53567 -10.33865 -10.21410 -10.08141 -9.80968 -9.45766 -9.36269 -8.88708 -8.71024 -8.28442 -7.94085 -5.96639 -4.02585 3.29789 3.38029 3.41897 3.74774 4.01773 4.45188 4.70117 4.76193 4.92923 5.09773 5.13143 5.24785 5.28601 5.33260 5.39300 5.50199 5.53915 5.57234 5.59356 5.63083 5.75946 5.78627 5.85404 5.90034 5.95000 5.98804 6.04858 6.12481 6.21573 6.26085 6.31633 6.41292 6.50606 6.54309 6.71962 6.78281 6.88012 7.09588 7.18998 7.26545 7.31356 7.36220 7.54741 7.77405 8.03623 8.18229 8.49368 9.01727 9.62055 11.08924 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.039463 B = 0.003627 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.347218 B = 7718.568432 C = 8076.424384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.146 4.146 4 C 0.100 3.900 5 H 0.062 0.938 6 C 0.018 3.982 7 N -0.533 5.533 8 C 0.089 3.911 9 C -0.107 4.107 10 C -0.108 4.108 11 C 0.049 3.951 12 C -0.512 4.512 13 H 0.053 0.947 14 C 0.060 3.940 15 N -0.890 5.890 16 Si 0.888 3.112 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.104 4.104 21 C -0.145 4.145 22 C 0.011 3.989 23 C 0.066 3.934 24 O -0.380 6.380 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.033 0.967 38 H 0.093 0.907 39 H 0.023 0.977 40 H 0.258 0.742 41 H 0.046 0.954 42 H 0.044 0.956 43 H 0.044 0.956 44 H 0.056 0.944 45 H 0.090 0.910 46 H 0.045 0.955 47 H 0.055 0.945 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.672 2.513 -8.528 18.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.106 4.106 3 C -0.204 4.204 4 C 0.042 3.958 5 H 0.080 0.920 6 C -0.110 4.110 7 N -0.256 5.256 8 C -0.018 4.018 9 C -0.145 4.145 10 C -0.146 4.146 11 C 0.031 3.969 12 C -0.550 4.550 13 H 0.072 0.928 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.716 3.284 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.142 4.142 21 C -0.184 4.184 22 C -0.117 4.117 23 C -0.011 4.011 24 O -0.299 6.299 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.111 0.889 39 H 0.041 0.959 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.075 0.925 45 H 0.109 0.891 46 H 0.063 0.937 47 H 0.073 0.927 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.956 2.094 -8.352 19.017 hybrid contribution 1.642 0.481 0.089 1.713 sum -15.314 2.575 -8.262 17.590 Atomic orbital electron populations 1.21747 0.94639 1.01595 1.01952 1.21135 0.96497 0.97011 0.95969 1.21833 1.01055 0.95605 1.01864 1.22151 0.92414 0.95575 0.85700 0.91982 1.22850 0.95382 0.98930 0.93813 1.62544 1.10774 1.51027 1.01260 1.21810 0.84039 0.95791 1.00187 1.21698 0.99093 0.98622 0.95098 1.21607 0.89854 1.00655 1.02527 1.18651 0.94758 0.91863 0.91657 1.21275 0.91595 1.36725 1.05408 0.92836 1.24964 0.97975 0.95498 0.95591 1.69881 1.34759 1.38862 1.09449 0.86599 0.86236 0.77659 0.77881 1.19875 1.21123 1.21071 1.21560 0.91857 0.99974 1.00791 1.22184 0.98800 0.97350 1.00086 1.22840 0.95407 0.97984 0.95440 1.22653 0.93268 0.98545 0.86672 1.87920 1.72836 1.55515 1.13620 0.91832 0.92950 0.92983 0.90209 0.93042 0.91856 0.92556 0.93164 0.90343 0.90559 0.92896 0.93202 0.94818 0.88877 0.95920 0.93165 0.93480 0.93695 0.93783 0.92548 0.89133 0.93667 0.92704 0.88842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.05 37.16 0.34 -0.93 16 2 C -0.09 -0.85 2.81 -90.62 -0.25 -1.11 16 3 C -0.15 -1.46 8.70 37.16 0.32 -1.14 16 4 C 0.10 1.17 2.54 -26.68 -0.07 1.10 16 5 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 6 C 0.02 0.24 4.27 -3.72 -0.02 0.23 16 7 N -0.53 -7.92 4.74 -226.32 -1.07 -8.99 16 8 C 0.09 1.52 2.26 -67.71 -0.15 1.36 16 9 C -0.11 -2.05 4.94 -26.73 -0.13 -2.18 16 10 C -0.11 -2.50 4.98 -26.73 -0.13 -2.63 16 11 C 0.05 1.21 2.10 -91.77 -0.19 1.01 16 12 C -0.51 -14.04 8.56 -34.44 -0.29 -14.33 16 13 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 15 N -0.89 -25.30 11.32 55.43 0.63 -24.67 16 16 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 C -0.10 -2.16 5.14 -26.73 -0.14 -2.29 16 21 C -0.15 -2.57 4.51 -26.73 -0.12 -2.69 16 22 C 0.01 0.16 4.87 -3.71 -0.02 0.14 16 23 C 0.07 0.79 7.01 37.21 0.26 1.05 16 24 O -0.38 -4.86 9.12 -35.23 -0.32 -5.18 16 25 H 0.06 0.63 7.69 -51.93 -0.40 0.23 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.70 7.68 -51.93 -0.40 0.30 16 31 H 0.06 0.59 6.36 -51.93 -0.33 0.26 16 32 H 0.05 0.69 4.63 -51.93 -0.24 0.45 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.05 1.02 6.33 -51.93 -0.33 0.70 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 39 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.04 0.71 6.51 -51.93 -0.34 0.38 16 44 H 0.06 1.03 6.48 -51.93 -0.34 0.69 16 45 H 0.09 1.31 6.16 -51.93 -0.32 0.99 16 46 H 0.05 0.68 6.46 -51.93 -0.34 0.35 16 47 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 347.52 15.07 5.24 5.24 Total: -1.00 -27.86 347.52 -10.05 -37.91 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -8.80 Total: 0.24 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: -0.69 Total: -20.82 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: -0.44 Total: -33.66 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: -0.32 Total: -5.18 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.86 -10.05 -37.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337086.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.945 kcal (2) G-P(sol) polarization free energy of solvation -27.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds