Wall clock time and date at job start Tue Mar 31 2020 05:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47272 * 2 1 4 4 O 1.42900 * 109.46751 * 239.99841 * 2 1 3 5 5 C 1.53002 * 109.47049 * 119.99941 * 2 1 3 6 6 H 1.08996 * 110.59695 * 300.27184 * 5 2 1 7 7 C 1.54940 * 110.66577 * 63.45926 * 5 2 1 8 8 C 1.54596 * 102.92044 * 155.84770 * 7 5 2 9 9 C 1.53988 * 105.14157 * 338.04132 * 8 7 5 10 10 N 1.47902 * 107.05609 * 358.77633 * 9 8 7 11 11 C 1.46903 * 111.00252 * 145.84460 * 10 9 8 12 12 C 1.53000 * 109.46937 * 58.18194 * 11 10 9 13 13 C 1.53001 * 109.47061 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.47307 * 60.00076 * 13 12 11 15 15 C 1.50700 * 109.46935 * 59.99976 * 14 13 12 16 16 H 1.08003 * 120.00119 * 335.13259 * 15 14 13 17 17 C 1.37875 * 120.00164 * 155.13704 * 15 14 13 18 18 N 1.31519 * 119.99618 * 355.27061 * 17 15 14 19 19 Si 1.86796 * 120.00213 * 175.27803 * 17 15 14 20 20 H 1.48504 * 109.47251 * 89.99760 * 19 17 15 21 21 H 1.48500 * 109.47186 * 329.99491 * 19 17 15 22 22 H 1.48505 * 109.47243 * 209.99358 * 19 17 15 23 23 C 1.53001 * 109.47218 * 300.00281 * 14 13 12 24 24 C 1.52994 * 109.47132 * 298.18580 * 11 10 9 25 25 H 1.09000 * 109.47137 * 299.99646 * 1 2 3 26 26 H 1.08992 * 109.47295 * 59.99972 * 1 2 3 27 27 H 1.09004 * 109.47081 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47347 * 196.94158 * 3 2 1 29 29 H 1.09001 * 109.46688 * 316.93790 * 3 2 1 30 30 H 1.08997 * 109.47298 * 76.93415 * 3 2 1 31 31 H 0.96706 * 113.99645 * 180.02562 * 4 2 1 32 32 H 1.09005 * 110.72322 * 274.20118 * 7 5 2 33 33 H 1.08993 * 110.72854 * 37.49057 * 7 5 2 34 34 H 1.09003 * 110.30634 * 96.95797 * 8 7 5 35 35 H 1.08996 * 110.30855 * 219.02311 * 8 7 5 36 36 H 1.08995 * 109.92383 * 239.42191 * 9 8 7 37 37 H 1.09005 * 109.92162 * 118.12309 * 9 8 7 38 38 H 1.08992 * 109.47298 * 178.18087 * 11 10 9 39 39 H 1.09001 * 109.47066 * 60.00574 * 12 11 10 40 40 H 1.08998 * 109.47688 * 300.00222 * 12 11 10 41 41 H 1.09004 * 109.47451 * 300.00078 * 13 12 11 42 42 H 1.09004 * 109.47128 * 179.97438 * 13 12 11 43 43 H 1.08997 * 109.47548 * 179.97438 * 14 13 12 44 44 H 0.97000 * 120.00000 * 5.29679 * 18 17 15 45 45 H 1.08995 * 109.47340 * 179.97438 * 23 14 13 46 46 H 1.09004 * 109.46860 * 300.00238 * 23 14 13 47 47 H 1.09005 * 109.47051 * 300.00077 * 24 11 10 48 48 H 1.09001 * 109.47591 * 59.99414 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7212 1.2493 6 1 1.6829 -0.2246 2.1514 7 6 1.6115 -2.2102 1.2343 8 6 2.6692 -2.8833 2.1388 9 6 3.8749 -1.9255 2.1293 10 7 3.5235 -0.7945 1.2434 11 6 4.1143 0.4591 1.7305 12 6 5.6345 0.3077 1.8143 13 6 6.2499 1.6131 2.3223 14 6 5.6920 1.9338 3.7104 15 6 6.0338 0.8145 4.6599 16 1 6.2162 -0.1797 4.2794 17 6 6.1134 1.0596 6.0144 18 7 5.9833 2.2867 6.4693 19 14 6.4063 -0.3512 7.2032 20 1 7.8664 -0.5355 7.4026 21 1 5.8216 -1.5974 6.6462 22 1 5.7640 -0.0422 8.5060 23 6 4.1718 2.0852 3.6267 24 6 3.5566 0.7803 3.1185 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.0880 1.4573 -0.2995 29 1 1.4532 2.0352 -0.7017 30 1 1.9421 1.8625 1.0010 31 1 2.9703 -0.7122 -1.2327 32 1 0.6129 -2.3284 1.6548 33 1 1.6557 -2.6141 0.2229 34 1 2.2837 -2.9962 3.1521 35 1 2.9521 -3.8542 1.7320 36 1 4.7549 -2.4400 1.7433 37 1 4.0675 -1.5608 3.1383 38 1 3.8672 1.2683 1.0435 39 1 6.0319 0.0789 0.8255 40 1 5.8818 -0.5016 2.5014 41 1 6.0027 2.4228 1.6355 42 1 7.3329 1.5051 2.3824 43 1 6.1307 2.8635 4.0725 44 1 5.7551 3.0076 5.8617 45 1 3.7743 2.3131 4.6157 46 1 3.9246 2.8947 2.9399 47 1 2.4735 0.8881 3.0589 48 1 3.8037 -0.0290 3.8057 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173337489.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:24 Heat of formation + Delta-G solvation = -63.994966 kcal Electronic energy + Delta-G solvation = -24894.394551 eV Core-core repulsion = 21755.211317 eV Total energy + Delta-G solvation = -3139.183234 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.35228 -37.64360 -36.09997 -33.10317 -32.31093 -31.15069 -29.88420 -28.00644 -27.37634 -27.21152 -24.28973 -22.86661 -21.89513 -21.10164 -20.18990 -19.53584 -18.65228 -16.56956 -16.39513 -15.97340 -15.16507 -14.75655 -14.52620 -13.93905 -13.69909 -13.54404 -13.32602 -13.25136 -12.90472 -12.69962 -12.36934 -12.18247 -12.05469 -11.88611 -11.67788 -11.44689 -11.25604 -11.05782 -10.99509 -10.88209 -10.80078 -10.73570 -10.55349 -10.36068 -10.14337 -10.02300 -9.73379 -9.66262 -9.20508 -9.12344 -8.41639 -8.17920 -7.92906 -6.31050 -4.01043 3.41033 3.43402 3.58665 4.13641 4.37813 4.52467 4.75162 4.79171 5.04441 5.14168 5.22406 5.26097 5.35433 5.41782 5.54192 5.62342 5.62759 5.68459 5.78694 5.88542 5.88894 5.96194 5.96911 5.98822 6.14144 6.14864 6.16799 6.20108 6.23768 6.28029 6.37626 6.38737 6.46757 6.50943 6.59605 6.76101 6.87734 6.99368 7.07997 7.18556 7.32886 7.36906 7.52987 7.64474 7.89493 8.30788 8.47883 8.92780 9.70079 11.07017 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.021916 B = 0.005766 C = 0.005228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.283882 B = 4854.529391 C = 5354.900022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.148 3.852 3 C -0.182 4.182 4 O -0.559 6.559 5 C 0.030 3.970 6 H 0.068 0.932 7 C -0.113 4.113 8 C -0.132 4.132 9 C 0.031 3.969 10 N -0.508 5.508 11 C 0.064 3.936 12 C -0.099 4.099 13 C -0.100 4.100 14 C 0.025 3.975 15 C -0.580 4.580 16 H 0.050 0.950 17 C 0.018 3.982 18 N -0.917 5.917 19 Si 1.062 2.938 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.286 1.286 23 C -0.099 4.099 24 C -0.133 4.133 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.382 0.618 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.044 0.956 40 H 0.070 0.930 41 H 0.030 0.970 42 H 0.049 0.951 43 H 0.028 0.972 44 H 0.270 0.730 45 H 0.048 0.952 46 H 0.022 0.978 47 H 0.037 0.963 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.785 -5.905 -11.598 15.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.107 3.893 3 C -0.239 4.239 4 O -0.366 6.366 5 C -0.079 4.079 6 H 0.086 0.914 7 C -0.151 4.151 8 C -0.170 4.170 9 C -0.097 4.097 10 N -0.232 5.232 11 C -0.043 4.043 12 C -0.137 4.137 13 C -0.138 4.138 14 C 0.006 3.994 15 C -0.618 4.618 16 H 0.068 0.932 17 C -0.185 4.185 18 N -0.554 5.554 19 Si 0.891 3.109 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.212 1.212 23 C -0.138 4.138 24 C -0.172 4.172 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.231 0.769 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.063 0.937 40 H 0.089 0.911 41 H 0.049 0.951 42 H 0.068 0.932 43 H 0.046 0.954 44 H 0.081 0.919 45 H 0.067 0.933 46 H 0.041 0.959 47 H 0.056 0.944 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.953 -6.415 -10.635 15.310 hybrid contribution 0.106 0.639 -0.440 0.784 sum -8.847 -5.775 -11.075 15.306 Atomic orbital electron populations 1.21756 0.93109 1.02595 1.02096 1.20897 0.93631 0.90262 0.84537 1.22760 1.01983 0.96823 1.02372 1.86367 1.27633 1.79434 1.43199 1.23570 0.89802 0.96582 0.97959 0.91419 1.22422 0.97707 0.94278 1.00706 1.22400 0.95942 0.98937 0.99690 1.22877 0.97686 0.91867 0.97277 1.64853 1.05934 1.04246 1.48124 1.22225 0.95439 0.91288 0.95372 1.21471 0.93106 0.99652 0.99462 1.21444 0.99246 0.95156 0.97931 1.18875 0.90686 0.97648 0.92147 1.21915 1.51179 0.95750 0.92954 0.93204 1.25696 0.94495 1.00863 0.97492 1.70754 1.45165 1.00018 1.39494 0.83643 0.76671 0.74607 0.75952 1.21568 1.21606 1.21205 1.21519 0.99844 0.94012 0.98428 1.22004 0.97101 1.00731 0.97348 0.91493 0.92022 0.91888 0.91034 0.92607 0.91655 0.76883 0.91865 0.90145 0.91936 0.91553 0.90867 0.91797 0.89512 0.93748 0.91115 0.95104 0.93177 0.95410 0.91887 0.93287 0.95924 0.94440 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.59 37.16 0.32 -1.17 16 2 C 0.15 1.82 0.92 -90.62 -0.08 1.73 16 3 C -0.18 -2.25 7.27 37.16 0.27 -1.98 16 4 O -0.56 -7.25 12.04 -35.23 -0.42 -7.68 16 5 C 0.03 0.39 1.60 -65.79 -0.11 0.29 16 6 H 0.07 0.99 5.50 -51.93 -0.29 0.71 16 7 C -0.11 -1.38 5.49 -24.87 -0.14 -1.52 16 8 C -0.13 -1.67 6.93 -25.38 -0.18 -1.85 16 9 C 0.03 0.46 5.14 -2.76 -0.01 0.44 16 10 N -0.51 -7.36 4.40 -214.74 -0.95 -8.30 16 11 C 0.06 1.06 1.74 -67.71 -0.12 0.94 16 12 C -0.10 -1.80 4.85 -26.73 -0.13 -1.93 16 13 C -0.10 -2.02 5.44 -26.73 -0.15 -2.17 16 14 C 0.03 0.59 2.31 -91.77 -0.21 0.38 16 15 C -0.58 -15.16 6.73 -34.44 -0.23 -15.39 16 16 H 0.05 1.31 6.09 -52.48 -0.32 0.99 16 17 C 0.02 0.50 5.45 -17.82 -0.10 0.41 16 18 N -0.92 -27.09 13.62 55.43 0.76 -26.34 16 19 Si 1.06 24.82 29.91 -169.99 -5.08 19.74 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 C -0.10 -2.14 5.44 -26.75 -0.15 -2.28 16 24 C -0.13 -2.51 4.21 -26.76 -0.11 -2.63 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.66 7.31 -51.93 -0.38 0.28 16 28 H 0.07 0.92 6.21 -51.93 -0.32 0.60 16 29 H 0.05 0.63 8.03 -51.93 -0.42 0.22 16 30 H 0.06 0.86 7.25 -51.93 -0.38 0.48 16 31 H 0.38 4.62 8.44 45.56 0.38 5.00 16 32 H 0.06 0.70 8.03 -51.93 -0.42 0.29 16 33 H 0.08 1.01 7.28 -51.93 -0.38 0.63 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 1.12 5.31 -51.93 -0.28 0.85 16 38 H 0.09 1.39 4.17 -51.93 -0.22 1.18 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 1.42 5.10 -51.93 -0.26 1.15 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.03 0.73 6.67 -51.93 -0.35 0.38 16 44 H 0.27 7.93 6.66 -40.82 -0.27 7.66 16 45 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.04 0.66 5.74 -51.93 -0.30 0.36 16 48 H 0.08 1.63 5.15 -51.93 -0.27 1.36 16 LS Contribution 337.75 15.07 5.09 5.09 Total: -1.00 -27.78 337.75 -9.20 -36.98 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -7.47 Total: 7.24 kcal Atomic # 6 Polarization: -25.61 SS G_CDS: -1.12 Total: -26.73 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: -0.19 Total: -34.64 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.42 Total: -7.68 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.08 Total: 19.74 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.78 -9.20 -36.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337489.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.015 kcal (2) G-P(sol) polarization free energy of solvation -27.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds