Wall clock time and date at job start Tue Mar 31 2020 05:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47125 * 2 1 4 4 O 1.42907 * 109.46824 * 240.00342 * 2 1 3 5 5 C 1.52997 * 109.47336 * 120.00256 * 2 1 3 6 6 H 1.08998 * 110.72404 * 300.08810 * 5 2 1 7 7 C 1.54929 * 110.67092 * 176.98509 * 5 2 1 8 8 C 1.54598 * 102.92538 * 204.15158 * 7 5 2 9 9 C 1.53993 * 105.13662 * 21.95803 * 8 7 5 10 10 N 1.47898 * 107.05904 * 1.22379 * 9 8 7 11 11 C 1.46899 * 111.00095 * 214.15748 * 10 9 8 12 12 C 1.52999 * 109.47199 * 302.70057 * 11 10 9 13 13 C 1.53002 * 109.47400 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.46849 * 300.00124 * 13 12 11 15 15 C 1.50704 * 109.47196 * 300.00009 * 14 13 12 16 16 H 1.07998 * 120.00020 * 120.00371 * 15 14 13 17 17 C 1.37876 * 120.00048 * 299.99819 * 15 14 13 18 18 N 1.31519 * 120.00029 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00165 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47191 * 60.00440 * 19 17 15 21 21 H 1.48509 * 109.47356 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47504 * 300.00066 * 19 17 15 23 23 C 1.52999 * 109.47221 * 59.99766 * 14 13 12 24 24 C 1.53001 * 109.47078 * 62.70198 * 11 10 9 25 25 H 1.08991 * 109.46699 * 283.00114 * 1 2 3 26 26 H 1.09000 * 109.46835 * 43.00257 * 1 2 3 27 27 H 1.09004 * 109.46971 * 162.99956 * 1 2 3 28 28 H 1.09004 * 109.47093 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47464 * 300.00152 * 3 2 1 30 30 H 1.09003 * 109.47052 * 60.00347 * 3 2 1 31 31 H 0.96702 * 113.99294 * 180.02562 * 4 2 1 32 32 H 1.08995 * 110.72551 * 85.79010 * 7 5 2 33 33 H 1.09001 * 110.72544 * 322.50976 * 7 5 2 34 34 H 1.08999 * 110.31290 * 263.04158 * 8 7 5 35 35 H 1.09000 * 110.30718 * 140.87043 * 8 7 5 36 36 H 1.09005 * 109.91726 * 241.87127 * 9 8 7 37 37 H 1.09004 * 109.92193 * 120.57722 * 9 8 7 38 38 H 1.09006 * 109.47527 * 182.70559 * 11 10 9 39 39 H 1.09002 * 109.47420 * 299.99927 * 12 11 10 40 40 H 1.09001 * 109.47109 * 60.00166 * 12 11 10 41 41 H 1.08996 * 109.47197 * 180.02562 * 13 12 11 42 42 H 1.08996 * 109.47314 * 59.99611 * 13 12 11 43 43 H 1.09002 * 109.47380 * 179.97438 * 14 13 12 44 44 H 0.97001 * 120.00563 * 179.97438 * 18 17 15 45 45 H 1.09003 * 109.47415 * 179.97438 * 23 14 13 46 46 H 1.09001 * 109.47109 * 59.99887 * 23 14 13 47 47 H 1.08996 * 109.46744 * 299.99942 * 24 11 10 48 48 H 1.08996 * 109.46776 * 60.00393 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.0401 -0.7213 1.2492 6 1 1.6868 -0.2244 2.1527 7 6 3.5871 -0.8038 1.2397 8 6 3.8738 -2.0260 2.1420 9 6 2.5740 -2.8516 2.1255 10 7 1.6236 -2.1470 1.2381 11 6 0.2439 -2.2962 1.7198 12 6 -0.1036 -3.7829 1.8194 13 6 -1.5408 -3.9383 2.3206 14 6 -1.6727 -3.2901 3.7002 15 6 -0.7292 -3.9630 4.6636 16 1 0.0411 -3.3878 5.1557 17 6 -0.8495 -5.3130 4.9170 18 7 -1.7874 -6.0135 4.3175 19 14 0.3204 -6.1472 6.1106 20 1 0.1930 -5.5182 7.4498 21 1 -0.0166 -7.5903 6.2070 22 1 1.7151 -5.9966 5.6236 23 6 -1.3252 -1.8035 3.6006 24 6 0.1126 -1.6482 3.0996 25 1 -0.3632 0.2312 1.0013 26 1 -0.3633 0.7516 -0.7009 27 1 -0.3633 -0.9828 -0.3005 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 2.9703 -0.7121 -1.2328 32 1 4.0243 0.1000 1.6640 33 1 3.9581 -0.9751 0.2291 34 1 4.1030 -1.7014 3.1570 35 1 4.6988 -2.6110 1.7357 36 1 2.1628 -2.9169 3.1329 37 1 2.7735 -3.8506 1.7376 38 1 -0.4389 -1.8094 1.0233 39 1 -0.0101 -4.2445 0.8365 40 1 0.5791 -4.2697 2.5159 41 1 -1.7882 -4.9974 2.3920 42 1 -2.2232 -3.4515 1.6239 43 1 -2.6967 -3.4004 4.0572 44 1 -1.8718 -6.9633 4.4954 45 1 -1.4196 -1.3416 4.5834 46 1 -2.0076 -1.3167 2.9038 47 1 0.7953 -2.1350 3.7960 48 1 0.3601 -0.5891 3.0285 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173337490.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:25 Heat of formation + Delta-G solvation = -73.526682 kcal Electronic energy + Delta-G solvation = -24926.142971 eV Core-core repulsion = 21786.546411 eV Total energy + Delta-G solvation = -3139.596560 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.48012 -38.97641 -37.23379 -34.63919 -33.30609 -32.70439 -31.32801 -29.09269 -28.96902 -28.11981 -26.58852 -24.05414 -23.27090 -22.21401 -21.42607 -20.48096 -20.01359 -17.87803 -17.68240 -17.25492 -16.76432 -16.27946 -15.67688 -15.50018 -14.96819 -14.81518 -14.71386 -14.50779 -14.14823 -13.70845 -13.48244 -13.30865 -13.06252 -13.01846 -12.94057 -12.88861 -12.72904 -12.59376 -12.47272 -12.41242 -12.26980 -11.99840 -11.92102 -11.70620 -11.45735 -11.30014 -11.21032 -10.95453 -10.66224 -10.55559 -10.50711 -10.27619 -9.01021 -8.03472 -6.13446 1.38626 1.39251 1.45865 2.43691 3.04909 3.24615 3.59714 3.66180 3.73911 4.02653 4.12243 4.14779 4.16770 4.23549 4.29922 4.47136 4.49485 4.64068 4.70006 4.76172 4.77616 4.82933 4.90434 4.93389 4.97882 4.99376 4.99797 5.00497 5.05581 5.10668 5.16742 5.22158 5.24139 5.31927 5.36346 5.40869 5.46777 5.54087 5.64842 5.73906 5.75161 5.92663 6.18148 6.22711 6.33715 6.46271 6.95781 7.06341 7.51970 9.01184 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023343 B = 0.005821 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.239008 B = 4809.411671 C = 5373.893430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.147 3.853 3 C -0.171 4.171 4 O -0.563 6.563 5 C 0.027 3.973 6 H 0.063 0.937 7 C -0.112 4.112 8 C -0.125 4.125 9 C 0.027 3.973 10 N -0.498 5.498 11 C 0.079 3.921 12 C -0.080 4.080 13 C -0.101 4.101 14 C 0.040 3.960 15 C -0.502 4.502 16 H 0.049 0.951 17 C 0.015 3.985 18 N -0.918 5.918 19 Si 0.937 3.063 20 H -0.273 1.273 21 H -0.288 1.288 22 H -0.273 1.273 23 C -0.097 4.097 24 C -0.127 4.127 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.379 0.621 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.034 0.966 37 H 0.057 0.943 38 H 0.092 0.908 39 H 0.035 0.965 40 H 0.044 0.956 41 H 0.056 0.944 42 H 0.024 0.976 43 H -0.013 1.013 44 H 0.257 0.743 45 H 0.043 0.957 46 H 0.049 0.951 47 H 0.051 0.949 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.152 14.215 -7.835 19.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.106 3.894 3 C -0.229 4.229 4 O -0.371 6.371 5 C -0.081 4.081 6 H 0.080 0.920 7 C -0.149 4.149 8 C -0.163 4.163 9 C -0.102 4.102 10 N -0.220 5.220 11 C -0.030 4.030 12 C -0.118 4.118 13 C -0.140 4.140 14 C 0.021 3.979 15 C -0.540 4.540 16 H 0.067 0.933 17 C -0.183 4.183 18 N -0.559 5.559 19 Si 0.764 3.236 20 H -0.199 1.199 21 H -0.214 1.214 22 H -0.198 1.198 23 C -0.135 4.135 24 C -0.166 4.166 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.228 0.772 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.052 0.948 37 H 0.076 0.924 38 H 0.110 0.890 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.043 0.957 43 H 0.006 0.994 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.467 13.740 -8.485 19.244 hybrid contribution 0.513 -0.918 1.938 2.205 sum 10.980 12.822 -6.547 18.106 Atomic orbital electron populations 1.22017 0.94108 1.02078 1.02153 1.20980 0.94000 0.90669 0.83753 1.22446 1.02453 0.94894 1.03068 1.86577 1.27169 1.80058 1.43282 1.23689 0.96302 0.89888 0.98232 0.91962 1.22519 0.93418 0.98195 1.00791 1.22361 0.96602 0.96894 1.00429 1.22867 0.93345 0.98421 0.95526 1.64924 1.01235 1.08785 1.47106 1.22030 0.90599 0.95913 0.94412 1.21212 0.97245 0.95407 0.97927 1.21356 0.94728 1.01685 0.96237 1.18671 0.94356 0.91698 0.93140 1.21290 1.15203 0.93458 1.24064 0.93271 1.25597 0.96802 0.98344 0.97552 1.70005 1.34282 1.07489 1.44085 0.85928 0.79986 0.77521 0.80155 1.19872 1.21394 1.19826 1.21404 0.96121 0.97090 0.98930 1.21990 0.97438 0.99228 0.97909 0.91293 0.91535 0.92721 0.90642 0.91520 0.91150 0.77178 0.89062 0.89780 0.91380 0.90171 0.94766 0.92405 0.89017 0.94662 0.93773 0.92564 0.95722 0.99448 0.93421 0.93850 0.93181 0.92997 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 7.30 71.98 0.53 -3.09 16 2 C 0.15 3.21 0.95 -10.79 -0.01 3.20 16 3 C -0.17 -2.66 8.56 71.98 0.62 -2.05 16 4 O -0.56 -13.54 12.79 -148.98 -1.90 -15.44 16 5 C 0.03 0.65 1.59 45.26 0.07 0.72 16 6 H 0.06 1.57 5.47 -2.39 -0.01 1.56 16 7 C -0.11 -2.07 5.46 31.80 0.17 -1.89 16 8 C -0.12 -2.83 6.93 31.47 0.22 -2.61 16 9 C 0.03 0.84 5.13 86.45 0.44 1.28 16 10 N -0.50 -15.49 4.86 -833.27 -4.05 -19.55 16 11 C 0.08 2.82 1.74 44.92 0.08 2.90 16 12 C -0.08 -3.49 4.83 30.59 0.15 -3.35 16 13 C -0.10 -4.94 5.24 30.60 0.16 -4.78 16 14 C 0.04 2.00 2.59 -11.54 -0.03 1.97 16 15 C -0.50 -27.08 6.61 25.60 0.17 -26.91 16 16 H 0.05 2.62 6.71 -2.91 -0.02 2.60 16 17 C 0.01 0.83 5.30 84.65 0.45 1.28 16 18 N -0.92 -53.78 11.32 21.45 0.24 -53.53 16 19 Si 0.94 44.05 29.54 68.60 2.03 46.08 16 20 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 21 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 22 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 23 C -0.10 -3.96 5.41 30.61 0.17 -3.79 16 24 C -0.13 -4.60 4.16 30.61 0.13 -4.48 16 25 H 0.07 1.66 7.14 -2.39 -0.02 1.65 16 26 H 0.07 1.43 8.02 -2.39 -0.02 1.41 16 27 H 0.05 1.63 6.21 -2.38 -0.01 1.61 16 28 H 0.07 0.92 7.29 -2.39 -0.02 0.90 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.38 6.57 7.00 -74.06 -0.52 6.05 16 32 H 0.09 1.30 8.03 -2.39 -0.02 1.28 16 33 H 0.08 1.33 6.11 -2.39 -0.01 1.32 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.03 1.27 5.31 -2.38 -0.01 1.25 16 37 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 38 H 0.09 3.24 4.24 -2.38 -0.01 3.23 16 39 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.04 2.14 5.97 -2.39 -0.01 2.12 16 41 H 0.06 3.13 6.07 -2.39 -0.01 3.11 16 42 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 43 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 44 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 45 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.05 2.11 4.60 -2.39 -0.01 2.10 16 48 H 0.06 2.00 5.61 -2.39 -0.01 1.99 16 Total: -1.00 -62.12 335.13 0.04 -62.08 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.43 Total: 21.96 kcal Atomic # 6 Polarization: -44.90 SS G_CDS: 3.31 Total: -41.59 kcal Atomic # 7 Polarization: -69.27 SS G_CDS: -3.81 Total: -73.08 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -1.90 Total: -15.44 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -62.12 0.04 -62.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337490.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.451 kcal (2) G-P(sol) polarization free energy of solvation -62.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds