Wall clock time and date at job start Tue Mar 31 2020 05:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47401 * 2 1 4 4 C 1.53010 * 109.46993 * 119.99945 * 2 1 3 5 5 H 1.09001 * 109.53873 * 59.88684 * 4 2 1 6 6 C 1.53104 * 109.50217 * 299.78050 * 4 2 1 7 7 O 1.43012 * 109.25557 * 183.21495 * 6 4 2 8 8 C 1.43021 * 113.73826 * 58.67203 * 7 6 4 9 9 C 1.53097 * 109.25618 * 301.32577 * 8 7 6 10 10 N 1.47012 * 109.50653 * 180.02562 * 4 2 1 11 11 C 1.46904 * 110.99898 * 302.32336 * 10 4 2 12 12 C 1.52999 * 109.47016 * 302.41353 * 11 10 4 13 13 C 1.53003 * 109.47022 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.46817 * 60.00024 * 13 12 11 15 15 C 1.50700 * 109.47106 * 60.00207 * 14 13 12 16 16 H 1.08000 * 119.99985 * 354.52736 * 15 14 13 17 17 C 1.37871 * 120.00164 * 174.52539 * 15 14 13 18 18 N 1.31513 * 120.00301 * 163.34191 * 17 15 14 19 19 Si 1.86806 * 120.00072 * 343.33982 * 17 15 14 20 20 H 1.48497 * 109.47328 * 270.00003 * 19 17 15 21 21 H 1.48493 * 109.47143 * 149.99774 * 19 17 15 22 22 H 1.48503 * 109.46749 * 29.99987 * 19 17 15 23 23 C 1.52992 * 109.47382 * 300.00035 * 14 13 12 24 24 C 1.52994 * 109.47065 * 60.00060 * 23 14 13 25 25 H 1.09006 * 109.47041 * 300.00747 * 1 2 3 26 26 H 1.09001 * 109.46700 * 59.99949 * 1 2 3 27 27 H 1.08994 * 109.47160 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47248 * 239.99274 * 2 1 3 29 29 H 1.08998 * 109.46544 * 299.99497 * 3 2 1 30 30 H 1.08997 * 109.47037 * 59.99668 * 3 2 1 31 31 H 1.09004 * 109.46867 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.50496 * 63.28434 * 6 4 2 33 33 H 1.08997 * 109.50675 * 303.14990 * 6 4 2 34 34 H 1.09001 * 109.50623 * 181.39437 * 8 7 6 35 35 H 1.08997 * 109.54123 * 61.28346 * 8 7 6 36 36 H 1.08997 * 109.51097 * 296.91239 * 9 8 7 37 37 H 1.09001 * 109.53980 * 176.80151 * 9 8 7 38 38 H 1.09000 * 109.46735 * 62.41054 * 11 10 4 39 39 H 1.09005 * 109.47311 * 60.00185 * 12 11 10 40 40 H 1.08997 * 109.47318 * 299.99941 * 12 11 10 41 41 H 1.08997 * 109.47184 * 300.00217 * 13 12 11 42 42 H 1.09000 * 109.47046 * 180.02562 * 13 12 11 43 43 H 1.09002 * 109.46857 * 179.97438 * 14 13 12 44 44 H 0.97002 * 119.99950 * 354.78448 * 18 17 15 45 45 H 1.08995 * 109.47141 * 180.02562 * 23 14 13 46 46 H 1.09005 * 109.47373 * 300.00030 * 23 14 13 47 47 H 1.09005 * 109.46995 * 180.02562 * 24 23 14 48 48 H 1.09001 * 109.47564 * 60.00291 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6756 -1.7486 1.2515 6 6 1.5345 0.0031 2.4999 7 8 2.0750 -0.6302 3.6626 8 6 3.5047 -0.6480 3.6965 9 6 4.0301 -1.3790 2.4581 10 7 3.5101 -0.7212 1.2505 11 6 4.0375 -1.3581 0.0362 12 6 3.4985 -2.7863 -0.0658 13 6 4.0473 -3.4494 -1.3308 14 6 5.5755 -3.4843 -1.2662 15 6 6.0094 -4.2725 -0.0573 16 1 5.2729 -4.6299 0.6471 17 6 7.3465 -4.5375 0.1495 18 7 7.7646 -4.9247 1.3347 19 14 8.5645 -4.3464 -1.2539 20 1 8.6787 -5.6318 -1.9888 21 1 9.8929 -3.9683 -0.7085 22 1 8.0900 -3.2871 -2.1803 23 6 6.1145 -2.0561 -1.1642 24 6 5.5657 -1.3931 0.1007 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6768 1.9562 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1301 1.4424 0.0005 32 1 0.4461 -0.0438 2.5327 33 1 1.8539 1.0448 2.4711 34 1 3.8411 -1.1658 4.5947 35 1 3.8820 0.3746 3.7029 36 1 3.6976 -2.4168 2.4796 37 1 5.1195 -1.3459 2.4500 38 1 3.7240 -0.7881 -0.8384 39 1 2.4097 -2.7614 -0.1122 40 1 3.8119 -3.3563 0.8088 41 1 3.7335 -2.8793 -2.2052 42 1 3.6630 -4.4668 -1.4037 43 1 5.9665 -3.9571 -2.1672 44 1 7.1468 -4.9513 2.0821 45 1 7.2032 -2.0810 -1.1187 46 1 5.8007 -1.4860 -2.0386 47 1 5.9494 -0.3754 0.1732 48 1 5.8795 -1.9632 0.9752 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173337768.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:30 Heat of formation + Delta-G solvation = -58.955049 kcal Electronic energy + Delta-G solvation = -24857.754841 eV Core-core repulsion = 21718.790154 eV Total energy + Delta-G solvation = -3138.964687 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.34367 -37.78964 -36.10905 -34.29717 -32.12770 -30.14432 -29.76095 -29.15269 -27.24105 -25.99982 -24.54069 -23.80261 -21.98108 -21.47167 -20.45052 -18.99612 -18.27021 -16.84786 -16.45933 -16.21027 -15.02493 -14.90674 -14.76918 -14.45761 -13.93521 -13.85474 -13.64059 -13.42116 -13.10780 -12.82999 -12.78046 -12.24574 -12.05190 -11.96868 -11.70859 -11.37563 -11.27437 -11.14679 -10.98282 -10.91161 -10.66921 -10.60427 -10.40266 -10.27480 -10.09694 -9.87096 -9.59088 -9.40914 -9.34707 -9.06421 -8.68991 -8.14990 -7.86453 -6.37079 -3.98864 3.43398 3.45731 3.60992 3.94097 4.08416 4.54568 4.77533 4.86140 5.08916 5.16631 5.24502 5.31558 5.33310 5.40755 5.46882 5.52405 5.59853 5.62543 5.64675 5.77730 5.81807 5.85149 5.87035 5.97058 6.10053 6.13559 6.15645 6.17923 6.24986 6.33451 6.35706 6.36924 6.44077 6.48917 6.51719 6.70143 6.82256 6.98889 7.10965 7.20937 7.24065 7.30504 7.39869 7.48170 7.58139 8.25165 8.42991 8.95870 9.66893 10.99491 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023022 B = 0.005766 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.953628 B = 4854.521223 C = 5438.411746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 C -0.140 4.140 4 C 0.051 3.949 5 H 0.052 0.948 6 C 0.067 3.933 7 O -0.390 6.390 8 C 0.064 3.936 9 C 0.014 3.986 10 N -0.523 5.523 11 C 0.092 3.908 12 C -0.137 4.137 13 C -0.093 4.093 14 C 0.014 3.986 15 C -0.584 4.584 16 H 0.055 0.945 17 C 0.031 3.969 18 N -0.911 5.911 19 Si 1.040 2.960 20 H -0.290 1.290 21 H -0.289 1.289 22 H -0.272 1.272 23 C -0.110 4.110 24 C -0.098 4.098 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.047 0.953 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.038 0.962 40 H 0.072 0.928 41 H 0.033 0.967 42 H 0.047 0.953 43 H 0.019 0.981 44 H 0.266 0.734 45 H 0.054 0.946 46 H 0.028 0.972 47 H 0.043 0.957 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.641 11.770 -1.014 16.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 C -0.197 4.197 4 C -0.058 4.058 5 H 0.070 0.930 6 C -0.010 4.010 7 O -0.309 6.309 8 C -0.013 4.013 9 C -0.114 4.114 10 N -0.247 5.247 11 C -0.015 4.015 12 C -0.176 4.176 13 C -0.131 4.131 14 C -0.005 4.005 15 C -0.622 4.622 16 H 0.073 0.927 17 C -0.173 4.173 18 N -0.546 5.546 19 Si 0.869 3.131 20 H -0.217 1.217 21 H -0.216 1.216 22 H -0.197 1.197 23 C -0.149 4.149 24 C -0.135 4.135 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.113 0.887 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.091 0.909 41 H 0.051 0.949 42 H 0.065 0.935 43 H 0.037 0.963 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.047 0.953 47 H 0.062 0.938 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.000 11.988 -1.247 15.661 hybrid contribution -1.687 -0.716 0.160 1.840 sum -11.688 11.272 -1.086 16.274 Atomic orbital electron populations 1.21896 0.95372 1.01697 1.01685 1.21111 0.94982 0.97104 0.97622 1.21784 1.02509 0.94878 1.00551 1.22281 0.89292 0.98747 0.95479 0.93044 1.22813 0.98014 0.96124 0.84043 1.87946 1.20744 1.80067 1.42108 1.22701 0.80497 1.00143 0.97914 1.22828 1.01766 0.96922 0.89904 1.62567 1.05765 1.53828 1.02517 1.21713 0.96039 0.92624 0.91131 1.22051 0.97505 0.97258 1.00759 1.21309 0.98348 0.98424 0.95011 1.19064 0.91246 0.92584 0.97590 1.21923 0.94145 1.37425 1.08699 0.92718 1.25665 0.97588 0.93655 1.00378 1.70816 1.38182 1.45343 1.00243 0.84151 0.75946 0.76891 0.76145 1.21659 1.21573 1.19723 1.21842 0.99891 0.98174 0.94970 1.21466 0.92524 0.98808 1.00726 0.92592 0.92559 0.92777 0.90625 0.93590 0.93012 0.91240 0.89105 0.92288 0.88840 0.92695 0.93518 0.88697 0.90856 0.94317 0.90928 0.94864 0.93451 0.96308 0.92447 0.92761 0.95337 0.93789 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.85 37.16 0.33 -1.13 16 2 C -0.09 -1.06 2.31 -90.61 -0.21 -1.26 16 3 C -0.14 -1.55 8.68 37.16 0.32 -1.23 16 4 C 0.05 0.70 1.27 -67.59 -0.09 0.61 16 5 H 0.05 0.80 6.41 -51.93 -0.33 0.47 16 6 C 0.07 0.85 5.57 37.21 0.21 1.06 16 7 O -0.39 -5.83 10.83 -35.23 -0.38 -6.21 16 8 C 0.06 0.90 7.01 37.21 0.26 1.17 16 9 C 0.01 0.22 4.86 -3.71 -0.02 0.21 16 10 N -0.52 -8.04 3.82 -218.40 -0.83 -8.88 16 11 C 0.09 1.58 1.82 -67.71 -0.12 1.46 16 12 C -0.14 -2.55 4.26 -26.73 -0.11 -2.66 16 13 C -0.09 -1.85 5.42 -26.73 -0.14 -1.99 16 14 C 0.01 0.32 2.14 -91.78 -0.20 0.13 16 15 C -0.58 -15.49 6.99 -34.44 -0.24 -15.73 16 16 H 0.05 1.58 6.76 -52.49 -0.35 1.23 16 17 C 0.03 0.87 5.34 -17.82 -0.10 0.78 16 18 N -0.91 -27.29 13.70 55.43 0.76 -26.53 16 19 Si 1.04 24.88 26.26 -169.99 -4.46 20.41 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.27 -5.97 5.51 56.52 0.31 -5.66 16 23 C -0.11 -2.32 4.86 -26.74 -0.13 -2.45 16 24 C -0.10 -1.89 4.55 -26.73 -0.12 -2.01 16 25 H 0.06 0.50 6.51 -51.93 -0.34 0.16 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.99 6.43 -51.93 -0.33 0.66 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.53 6.36 -51.93 -0.33 0.20 16 31 H 0.07 0.88 7.60 -51.93 -0.39 0.49 16 32 H 0.09 1.01 6.62 -51.93 -0.34 0.66 16 33 H 0.06 0.72 6.27 -51.93 -0.33 0.39 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.85 6.59 -51.93 -0.34 0.51 16 37 H 0.09 1.64 6.07 -51.93 -0.32 1.33 16 38 H 0.07 1.22 6.40 -51.93 -0.33 0.89 16 39 H 0.04 0.66 6.42 -51.93 -0.33 0.33 16 40 H 0.07 1.56 4.98 -51.93 -0.26 1.30 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.02 0.44 6.72 -51.93 -0.35 0.09 16 44 H 0.27 7.95 8.73 -40.82 -0.36 7.59 16 45 H 0.05 1.20 5.06 -51.93 -0.26 0.94 16 46 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.08 1.76 5.35 -51.93 -0.28 1.48 16 LS Contribution 330.82 15.07 4.99 4.99 Total: -1.00 -28.17 330.82 -8.57 -36.74 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -8.27 Total: 2.55 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: -0.36 Total: -23.07 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: -0.08 Total: -35.41 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.38 Total: -6.21 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -4.46 Total: 20.41 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.17 -8.57 -36.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337768.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.215 kcal (2) G-P(sol) polarization free energy of solvation -28.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds