Wall clock time and date at job start Tue Mar 31 2020 05:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47481 * 2 1 4 4 C 1.52999 * 109.46997 * 180.02562 * 3 2 1 5 5 O 1.42905 * 109.46728 * 180.02562 * 4 3 2 6 6 C 1.42899 * 113.99778 * 179.97438 * 5 4 3 7 7 C 1.53939 * 113.73275 * 248.76402 * 6 5 4 8 8 N 1.48185 * 86.10186 * 221.95862 * 7 6 5 9 9 C 1.46902 * 111.07232 * 137.51763 * 8 7 6 10 10 C 1.52996 * 109.47159 * 200.56560 * 9 8 7 11 11 C 1.52999 * 109.47216 * 180.02562 * 10 9 8 12 12 C 1.52998 * 109.47411 * 59.99813 * 11 10 9 13 13 C 1.50699 * 109.47020 * 60.00089 * 12 11 10 14 14 H 1.07997 * 120.00293 * 240.00409 * 13 12 11 15 15 C 1.37883 * 119.99942 * 60.00162 * 13 12 11 16 16 N 1.31517 * 119.99672 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00166 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46971 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46993 * 119.99994 * 17 15 13 20 20 H 1.48492 * 109.47422 * 240.00096 * 17 15 13 21 21 C 1.53003 * 109.46898 * 300.00485 * 12 11 10 22 22 C 1.53001 * 109.47420 * 59.99939 * 21 12 11 23 23 C 1.47964 * 90.79739 * 24.59980 * 8 7 6 24 24 H 1.09004 * 109.46672 * 300.00239 * 1 2 3 25 25 H 1.08996 * 109.47340 * 59.99477 * 1 2 3 26 26 H 1.08992 * 109.47718 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46925 * 240.00215 * 2 1 3 28 28 H 1.08996 * 109.47340 * 120.00523 * 2 1 3 29 29 H 1.09000 * 109.46866 * 60.00179 * 3 2 1 30 30 H 1.09001 * 109.46611 * 300.00296 * 3 2 1 31 31 H 1.09000 * 109.47486 * 60.00167 * 4 3 2 32 32 H 1.09001 * 109.47362 * 299.99445 * 4 3 2 33 33 H 1.08997 * 112.94121 * 20.33368 * 6 5 4 34 34 H 1.09007 * 113.75720 * 336.23979 * 7 6 5 35 35 H 1.08996 * 113.75849 * 107.60074 * 7 6 5 36 36 H 1.08996 * 109.47229 * 320.57014 * 9 8 7 37 37 H 1.09005 * 109.47293 * 300.00210 * 10 9 8 38 38 H 1.09001 * 109.47323 * 60.00295 * 10 9 8 39 39 H 1.09005 * 109.46861 * 300.00107 * 11 10 9 40 40 H 1.08994 * 109.47603 * 180.02562 * 11 10 9 41 41 H 1.08996 * 109.47540 * 180.02562 * 12 11 10 42 42 H 0.96995 * 119.99477 * 180.02562 * 16 15 13 43 43 H 1.08996 * 109.47336 * 299.99477 * 21 12 11 44 44 H 1.09004 * 109.46716 * 179.97438 * 21 12 11 45 45 H 1.09001 * 109.47206 * 179.97438 * 22 21 12 46 46 H 1.09005 * 109.47203 * 59.99661 * 22 21 12 47 47 H 1.09003 * 113.75345 * 221.08205 * 23 8 7 48 48 H 1.09001 * 113.86350 * 89.73629 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 8 4.0464 2.7897 0.0000 6 6 5.4709 2.9025 0.0000 7 6 6.0483 3.4596 1.3138 8 7 6.9537 4.2616 0.4577 9 6 7.0760 5.6364 0.9607 10 6 7.5653 6.5497 -0.1650 11 6 7.6932 7.9815 0.3590 12 6 8.6957 8.0141 1.5143 13 6 10.0391 7.5356 1.0273 14 1 10.4981 6.6669 1.4758 15 6 10.6824 8.2067 0.0090 16 7 10.1237 9.2649 -0.5368 17 14 12.3480 7.6140 -0.5942 18 1 12.7556 6.4132 0.1784 19 1 12.2579 7.2677 -2.0355 20 1 13.3543 8.6896 -0.4056 21 6 8.2064 7.1007 2.6400 22 6 8.0786 5.6689 2.1160 23 6 5.9904 4.1908 -0.6632 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0275 -0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9330 0.9287 -0.8909 32 1 3.9337 0.9285 0.8892 33 1 5.9687 1.9979 -0.3492 34 1 5.3396 4.0587 1.8857 35 1 6.5617 2.7128 1.9194 36 1 6.1042 5.9823 1.3128 37 1 8.5372 6.2038 -0.5171 38 1 6.8512 6.5262 -0.9883 39 1 6.7215 8.3276 0.7113 40 1 8.0413 8.6322 -0.4430 41 1 8.7865 9.0340 1.8879 42 1 10.5761 9.7368 -1.2534 43 1 7.2347 7.4468 2.9924 44 1 8.9209 7.1236 3.4629 45 1 7.7304 5.0181 2.9181 46 1 9.0503 5.3228 1.7637 47 1 6.4579 4.0272 -1.6342 48 1 5.2642 5.0036 -0.6725 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173340035.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:14 Heat of formation + Delta-G solvation = -43.322477 kcal Electronic energy + Delta-G solvation = -22706.365347 eV Core-core repulsion = 19568.078539 eV Total energy + Delta-G solvation = -3138.286808 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.13180 -37.84319 -36.54028 -34.90896 -32.40415 -30.17651 -29.59782 -29.07693 -25.97266 -25.86662 -24.31649 -23.51125 -21.50044 -21.27125 -20.65372 -19.60810 -18.64327 -16.99716 -16.30543 -15.96524 -15.64252 -14.88974 -14.75001 -14.35943 -14.25190 -13.81164 -13.63223 -13.13550 -12.95949 -12.80666 -12.58672 -12.49870 -12.22572 -11.83179 -11.47066 -11.41058 -11.37785 -11.12325 -10.97548 -10.93968 -10.86361 -10.78028 -10.56782 -10.37348 -10.29225 -10.01136 -9.55284 -9.49437 -9.10076 -8.78307 -8.61452 -8.44243 -8.19309 -5.90101 -3.93524 3.34422 3.42785 3.46122 3.47125 4.23062 4.51185 4.51928 4.62553 4.68639 4.76222 4.98852 5.01671 5.19674 5.27133 5.30993 5.40494 5.46382 5.50477 5.51136 5.59741 5.65093 5.69754 5.74991 5.79647 5.88731 5.92736 5.96685 6.03492 6.12366 6.23465 6.41201 6.54387 6.61039 6.68007 6.79136 6.86983 6.93145 7.14529 7.18983 7.27670 7.39664 7.57659 7.68997 7.81909 7.99927 8.22218 8.56217 9.08837 9.69355 11.16039 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.034155 B = 0.003010 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.603539 B = 9299.196014 C = 9485.035387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.120 4.120 4 C 0.060 3.940 5 O -0.378 6.378 6 C 0.057 3.943 7 C -0.014 4.014 8 N -0.470 5.470 9 C 0.064 3.936 10 C -0.093 4.093 11 C -0.106 4.106 12 C 0.043 3.957 13 C -0.495 4.495 14 H 0.056 0.944 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.884 3.116 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.287 1.287 21 C -0.107 4.107 22 C -0.092 4.092 23 C 0.010 3.990 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.034 0.966 37 H 0.078 0.922 38 H 0.030 0.970 39 H 0.011 0.989 40 H 0.092 0.908 41 H 0.024 0.976 42 H 0.257 0.743 43 H 0.030 0.970 44 H 0.047 0.953 45 H 0.032 0.968 46 H 0.077 0.923 47 H 0.090 0.910 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.055 -15.913 0.736 21.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.158 4.158 4 C -0.016 4.016 5 O -0.296 6.296 6 C -0.002 4.002 7 C -0.143 4.143 8 N -0.194 5.194 9 C -0.044 4.044 10 C -0.130 4.130 11 C -0.145 4.145 12 C 0.024 3.976 13 C -0.534 4.534 14 H 0.074 0.926 15 C -0.141 4.141 16 N -0.533 5.533 17 Si 0.713 3.287 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.213 1.213 21 C -0.145 4.145 22 C -0.130 4.130 23 C -0.118 4.118 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.052 0.948 37 H 0.097 0.903 38 H 0.049 0.951 39 H 0.030 0.970 40 H 0.111 0.889 41 H 0.042 0.958 42 H 0.067 0.933 43 H 0.049 0.951 44 H 0.066 0.934 45 H 0.051 0.949 46 H 0.096 0.904 47 H 0.109 0.891 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.463 -15.816 0.510 21.438 hybrid contribution 0.312 -0.111 -0.228 0.403 sum -14.151 -15.927 0.282 21.307 Atomic orbital electron populations 1.21753 0.95459 1.01657 1.02062 1.21445 0.96214 0.96156 1.02178 1.21564 0.93710 0.97110 1.03376 1.22550 0.94932 0.84177 0.99975 1.87959 1.21042 1.26059 1.94557 1.24255 0.80349 0.98813 0.96769 1.24500 0.95045 0.98375 0.96368 1.68590 1.33827 1.12725 1.04275 1.22215 0.97583 0.87394 0.97211 1.21421 1.00900 0.96082 0.94629 1.21508 0.95914 0.94914 1.02156 1.18700 0.93919 0.94374 0.90561 1.21185 1.02524 1.12158 1.17507 0.92599 1.24941 0.97355 0.95028 0.96774 1.69882 1.38066 1.19217 1.26099 0.86651 0.84746 0.78680 0.78639 1.19846 1.21195 1.21294 1.21562 0.98249 0.95402 0.99277 1.21335 0.99746 0.96970 0.94900 1.24101 0.94169 0.96048 0.97529 0.92597 0.92605 0.92666 0.91876 0.91863 0.91160 0.91156 0.93443 0.93454 0.88991 0.90813 0.89671 0.94821 0.90314 0.95083 0.97006 0.88942 0.95824 0.93307 0.95072 0.93401 0.94880 0.90414 0.89129 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.15 0.37 -0.55 16 2 C -0.12 -0.81 5.93 -26.73 -0.16 -0.97 16 3 C -0.12 -1.01 5.58 -26.73 -0.15 -1.16 16 4 C 0.06 0.58 5.79 37.16 0.21 0.80 16 5 O -0.38 -4.85 10.36 -35.23 -0.37 -5.22 16 6 C 0.06 0.73 4.48 -25.80 -0.12 0.61 16 7 C -0.01 -0.19 7.45 -2.63 -0.02 -0.21 16 8 N -0.47 -7.90 5.98 -230.30 -1.38 -9.28 16 9 C 0.06 1.22 1.60 -67.71 -0.11 1.11 16 10 C -0.09 -1.99 4.88 -26.73 -0.13 -2.12 16 11 C -0.11 -2.53 5.23 -26.73 -0.14 -2.67 16 12 C 0.04 1.07 2.59 -91.77 -0.24 0.83 16 13 C -0.50 -13.33 6.61 -34.44 -0.23 -13.56 16 14 H 0.06 1.51 6.71 -52.49 -0.35 1.16 16 15 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 16 N -0.89 -25.49 11.32 55.43 0.63 -24.86 16 17 Si 0.88 21.50 29.54 -169.99 -5.02 16.48 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 C -0.11 -2.27 5.41 -26.73 -0.14 -2.41 16 22 C -0.09 -1.82 5.16 -26.73 -0.14 -1.96 16 23 C 0.01 0.15 6.55 -2.76 -0.02 0.14 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 1.06 7.89 -51.93 -0.41 0.65 16 34 H 0.07 1.07 7.63 -51.93 -0.40 0.68 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.03 0.64 7.63 -51.93 -0.40 0.24 16 37 H 0.08 1.90 7.22 -51.93 -0.37 1.53 16 38 H 0.03 0.62 7.02 -51.93 -0.36 0.25 16 39 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 41 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.03 0.59 7.92 -51.93 -0.41 0.18 16 46 H 0.08 1.70 6.62 -51.93 -0.34 1.36 16 47 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 48 H 0.08 1.19 7.66 -51.93 -0.40 0.79 16 LS Contribution 363.81 15.07 5.48 5.48 Total: -1.00 -28.23 363.81 -10.99 -39.22 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -9.24 Total: -1.23 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -1.10 Total: -20.58 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: -0.75 Total: -34.14 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.37 Total: -5.22 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.23 -10.99 -39.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173340035.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.105 kcal (2) G-P(sol) polarization free energy of solvation -28.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds