Wall clock time and date at job start Tue Mar 31 2020 06:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47084 * 2 1 4 4 H 1.09001 * 109.47162 * 55.99114 * 3 2 1 5 5 C 1.53007 * 109.47272 * 295.99248 * 3 2 1 6 6 C 1.52995 * 109.47063 * 176.09706 * 5 3 2 7 7 C 1.52999 * 109.46777 * 175.49666 * 6 5 3 8 8 C 1.52995 * 109.47595 * 295.49808 * 6 5 3 9 9 C 1.50699 * 109.47482 * 175.99126 * 3 2 1 10 10 O 1.21277 * 119.99998 * 82.88950 * 9 3 2 11 11 N 1.34772 * 120.00055 * 262.89796 * 9 3 2 12 12 C 1.46500 * 120.00356 * 174.06545 * 11 9 3 13 13 H 1.09003 * 109.40839 * 35.13221 * 12 11 9 14 14 C 1.52958 * 109.41736 * 154.99751 * 12 11 9 15 15 C 1.53226 * 109.40330 * 183.70586 * 14 12 11 16 16 C 1.51275 * 108.53743 * 305.36794 * 15 14 12 17 17 C 1.37869 * 120.85433 * 231.32858 * 16 15 14 18 18 N 1.31516 * 120.00011 * 0.02562 * 17 16 15 19 19 Si 1.86800 * 120.00288 * 179.97438 * 17 16 15 20 20 H 1.48504 * 109.46917 * 60.00167 * 19 17 16 21 21 H 1.48507 * 109.47162 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47215 * 300.00265 * 19 17 16 23 23 C 1.51273 * 118.29507 * 51.35247 * 16 15 14 24 24 C 1.52960 * 109.40965 * 275.35367 * 12 11 9 25 25 H 1.08999 * 109.47514 * 66.78654 * 1 2 3 26 26 H 1.08998 * 109.46844 * 186.78517 * 1 2 3 27 27 H 1.08996 * 109.47165 * 306.78370 * 1 2 3 28 28 H 1.08997 * 109.47120 * 240.00597 * 2 1 3 29 29 H 1.08998 * 109.47589 * 119.99956 * 2 1 3 30 30 H 1.08996 * 109.46879 * 296.10352 * 5 3 2 31 31 H 1.09004 * 109.46954 * 56.09816 * 5 3 2 32 32 H 1.09003 * 109.47121 * 55.50198 * 6 5 3 33 33 H 1.09001 * 109.47105 * 60.00854 * 7 6 5 34 34 H 1.09002 * 109.47345 * 180.02562 * 7 6 5 35 35 H 1.08996 * 109.47627 * 300.00547 * 7 6 5 36 36 H 1.09001 * 109.46813 * 66.66337 * 8 6 5 37 37 H 1.08994 * 109.47099 * 186.65984 * 8 6 5 38 38 H 1.09001 * 109.47461 * 306.66874 * 8 6 5 39 39 H 0.97007 * 120.00023 * 354.06195 * 11 9 3 40 40 H 1.09004 * 109.47861 * 303.68220 * 14 12 11 41 41 H 1.08992 * 109.48270 * 63.71078 * 14 12 11 42 42 H 1.08997 * 109.63093 * 65.08635 * 15 14 12 43 43 H 1.09005 * 109.62566 * 185.46764 * 15 14 12 44 44 H 0.97004 * 120.00635 * 180.02562 * 18 17 16 45 45 H 1.09000 * 109.62996 * 68.36973 * 23 16 15 46 46 H 1.09001 * 109.61957 * 188.74580 * 23 16 15 47 47 H 1.09003 * 109.48283 * 296.26848 * 24 12 11 48 48 H 1.08998 * 109.49016 * 56.31187 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6192 1.9767 0.8519 5 6 1.6140 2.1341 -1.2966 6 6 2.0392 3.6032 -1.2546 7 6 1.7142 4.2667 -2.5943 8 6 1.2846 4.3208 -0.1337 9 6 3.5437 1.4438 0.0993 10 8 4.2174 1.2900 -0.8973 11 7 4.1399 1.6156 1.2957 12 6 5.5944 1.4876 1.4146 13 1 6.0667 1.8674 0.5085 14 6 6.0795 2.2969 2.6184 15 6 7.6090 2.2385 2.6882 16 6 8.0348 0.7869 2.7006 17 6 8.9004 0.3122 3.6629 18 7 9.3666 1.1243 4.5863 19 14 9.4099 -1.4850 3.6562 20 1 10.0897 -1.8019 2.3745 21 1 10.3400 -1.7401 4.7855 22 1 8.2058 -2.3414 3.8028 23 6 7.4869 -0.1302 1.6296 24 6 5.9617 0.0141 1.5982 25 1 -0.3634 0.4050 -0.9444 26 1 -0.3633 -1.0205 0.1214 27 1 -0.3633 0.6153 0.8230 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.0905 1.6420 -2.1444 31 1 0.5308 2.0723 -1.4025 32 1 3.1115 3.6659 -1.0688 33 1 0.6420 4.2041 -2.7801 34 1 2.0176 5.3132 -2.5646 35 1 2.2517 3.7555 -3.3929 36 1 1.6056 3.9267 0.8306 37 1 1.4971 5.3889 -0.1785 38 1 0.2136 4.1579 -0.2544 39 1 3.6058 1.8241 2.0783 40 1 5.7597 3.3336 2.5122 41 1 5.6574 1.8781 3.5319 42 1 8.0346 2.7374 1.8176 43 1 7.9532 2.7316 3.5974 44 1 9.9759 0.7904 5.2633 45 1 7.9012 0.1494 0.6610 46 1 7.7553 -1.1616 1.8585 47 1 5.5426 -0.3509 2.5359 48 1 5.5586 -0.5672 0.7689 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181843528.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:40 Heat of formation + Delta-G solvation = -109.870134 kcal Electronic energy + Delta-G solvation = -23366.980759 eV Core-core repulsion = 20225.808229 eV Total energy + Delta-G solvation = -3141.172531 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.24458 -38.86148 -37.45331 -35.36757 -35.00102 -33.35270 -31.51890 -30.06748 -28.89084 -27.98300 -26.06782 -24.16145 -23.37371 -22.42144 -21.43429 -21.27167 -20.31089 -18.40879 -17.77982 -17.04323 -16.45964 -16.22690 -15.93950 -15.53984 -15.21128 -14.96294 -14.70371 -14.53232 -14.22979 -14.04562 -13.96234 -13.59489 -13.36825 -13.21669 -13.00575 -12.85691 -12.78410 -12.64788 -12.55258 -12.43176 -12.16683 -12.02094 -11.91098 -11.83688 -11.61983 -11.47479 -11.37542 -11.21514 -11.01757 -10.74238 -10.59727 -10.46923 -9.86882 -8.19641 -6.13831 1.37642 1.39555 1.47184 1.74252 2.33068 2.38912 3.08685 3.63948 3.80724 3.91934 4.03012 4.11091 4.18778 4.26284 4.30224 4.47157 4.48491 4.59261 4.63012 4.67658 4.78328 4.82604 4.83942 4.91115 4.92808 4.93442 5.03760 5.04405 5.11970 5.13466 5.16813 5.17263 5.20835 5.22903 5.24967 5.36854 5.46802 5.50140 5.51424 5.55395 5.57083 5.70482 5.74068 5.80167 6.32578 6.71977 6.90943 7.39840 7.44485 8.91133 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024706 B = 0.004057 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.036067 B = 6900.307331 C = 7438.541597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C -0.098 4.098 4 H 0.113 0.887 5 C -0.094 4.094 6 C -0.103 4.103 7 C -0.142 4.142 8 C -0.145 4.145 9 C 0.512 3.488 10 O -0.589 6.589 11 N -0.716 5.716 12 C 0.165 3.835 13 H 0.051 0.949 14 C -0.099 4.099 15 C 0.009 3.991 16 C -0.501 4.501 17 C 0.028 3.972 18 N -0.927 5.927 19 Si 0.940 3.060 20 H -0.272 1.272 21 H -0.290 1.290 22 H -0.264 1.264 23 C -0.011 4.011 24 C -0.104 4.104 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.099 0.901 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.042 0.958 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.410 0.590 40 H 0.057 0.943 41 H 0.058 0.942 42 H -0.006 1.006 43 H 0.034 0.966 44 H 0.265 0.735 45 H 0.011 0.989 46 H 0.027 0.973 47 H 0.057 0.943 48 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.583 2.154 -7.228 22.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.150 4.150 3 C -0.119 4.119 4 H 0.131 0.869 5 C -0.132 4.132 6 C -0.122 4.122 7 C -0.200 4.200 8 C -0.202 4.202 9 C 0.300 3.700 10 O -0.469 6.469 11 N -0.367 5.367 12 C 0.061 3.939 13 H 0.069 0.931 14 C -0.138 4.138 15 C -0.029 4.029 16 C -0.520 4.520 17 C -0.171 4.171 18 N -0.567 5.567 19 Si 0.767 3.233 20 H -0.198 1.198 21 H -0.217 1.217 22 H -0.189 1.189 23 C -0.050 4.050 24 C -0.143 4.143 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.117 0.883 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.246 0.754 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.012 0.988 43 H 0.053 0.947 44 H 0.074 0.926 45 H 0.029 0.971 46 H 0.046 0.954 47 H 0.076 0.924 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -20.994 2.048 -7.763 22.476 hybrid contribution 1.076 -0.740 0.505 1.400 sum -19.918 1.308 -7.257 21.239 Atomic orbital electron populations 1.21771 0.92737 1.02635 1.02968 1.21431 0.98157 0.93354 1.02049 1.21506 0.89018 0.99372 1.02034 0.86856 1.21585 1.02196 0.94108 0.95312 1.21143 0.98902 0.95301 0.96858 1.21782 1.02193 1.00082 0.95906 1.21876 1.00892 0.99932 0.97486 1.21368 0.91806 0.74400 0.82376 1.90652 1.67516 1.51310 1.37434 1.46244 1.08007 1.71367 1.11056 1.20569 0.79626 0.95575 0.98145 0.93115 1.21678 0.98037 0.97741 0.96311 1.19294 0.91805 0.95431 0.96392 1.20551 1.25652 0.95241 1.10555 1.25526 0.95681 1.00995 0.94886 1.69937 1.33292 1.36919 1.16504 0.85849 0.78484 0.81604 0.77392 1.19783 1.21656 1.18874 1.19603 0.93305 0.95833 0.96217 1.21765 0.97363 0.95638 0.99539 0.91644 0.91955 0.91144 0.92962 0.91856 0.93124 0.88277 0.94591 0.90955 0.92660 0.93892 0.92576 0.92794 0.90740 0.75374 0.92480 0.92286 0.98753 0.94702 0.92627 0.97059 0.95409 0.92422 0.94378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.47 71.98 0.68 -1.11 16 2 C -0.11 -2.10 5.40 30.59 0.17 -1.93 16 3 C -0.10 -2.01 2.07 -11.54 -0.02 -2.04 16 4 H 0.11 1.74 6.44 -2.39 -0.02 1.72 16 5 C -0.09 -1.85 3.76 30.59 0.12 -1.74 16 6 C -0.10 -2.12 2.80 -10.80 -0.03 -2.15 16 7 C -0.14 -2.57 9.19 71.98 0.66 -1.90 16 8 C -0.14 -2.25 8.77 71.98 0.63 -1.61 16 9 C 0.51 15.71 5.66 87.66 0.50 16.20 16 10 O -0.59 -23.72 15.73 -3.02 -0.05 -23.76 16 11 N -0.72 -21.61 5.07 -442.67 -2.24 -23.85 16 12 C 0.17 6.44 2.40 44.96 0.11 6.55 16 13 H 0.05 2.28 7.50 -2.39 -0.02 2.26 16 14 C -0.10 -4.00 5.40 30.66 0.17 -3.83 16 15 C 0.01 0.44 5.96 30.11 0.18 0.62 16 16 C -0.50 -26.69 5.51 -16.17 -0.09 -26.78 16 17 C 0.03 1.54 5.46 84.65 0.46 2.00 16 18 N -0.93 -54.08 12.73 21.44 0.27 -53.81 16 19 Si 0.94 43.91 26.80 68.60 1.84 45.75 16 20 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 22 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 23 C -0.01 -0.55 5.60 30.11 0.17 -0.38 16 24 C -0.10 -4.33 5.50 30.66 0.17 -4.17 16 25 H 0.06 0.72 6.80 -2.39 -0.02 0.71 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.05 1.25 7.73 -2.39 -0.02 1.23 16 31 H 0.10 1.38 6.51 -2.38 -0.02 1.37 16 32 H 0.04 1.00 7.09 -2.39 -0.02 0.98 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.06 0.85 6.80 -2.39 -0.02 0.83 16 37 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.41 9.58 8.54 -92.70 -0.79 8.79 16 40 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 42 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 43 H 0.03 1.91 7.08 -2.38 -0.02 1.89 16 44 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 45 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.03 1.29 5.17 -2.39 -0.01 1.28 16 47 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 48 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -65.79 364.70 3.80 -61.99 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.12 Total: 15.95 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 3.86 Total: -22.26 kcal Atomic # 7 Polarization: -75.69 SS G_CDS: -1.97 Total: -77.67 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.05 Total: -23.76 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.84 Total: 45.75 kcal Total: -65.79 3.80 -61.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181843528.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.884 kcal (2) G-P(sol) polarization free energy of solvation -65.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds