Wall clock time and date at job start Tue Mar 31 2020 06:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47429 * 2 1 4 4 H 1.09006 * 109.46995 * 345.06414 * 3 2 1 5 5 C 1.50702 * 109.47412 * 225.06359 * 3 2 1 6 6 H 1.08001 * 119.99278 * 239.72903 * 5 3 2 7 7 C 1.37871 * 119.99862 * 59.99551 * 5 3 2 8 8 N 1.31512 * 120.00481 * 359.73147 * 7 5 3 9 9 Si 1.86802 * 119.99802 * 179.72455 * 7 5 3 10 10 H 1.48506 * 109.47069 * 90.00180 * 9 7 5 11 11 H 1.48501 * 109.47439 * 210.00293 * 9 7 5 12 12 H 1.48503 * 109.47341 * 330.00608 * 9 7 5 13 13 N 1.46902 * 109.47053 * 105.05922 * 3 2 1 14 14 C 1.46895 * 111.00281 * 267.43675 * 13 3 2 15 15 C 1.53003 * 109.54288 * 289.73404 * 14 13 3 16 16 C 1.52995 * 109.46821 * 304.99590 * 15 14 13 17 17 C 1.53776 * 113.61854 * 274.13858 * 16 15 14 18 18 C 1.53951 * 87.02247 * 220.05020 * 17 16 15 19 19 C 1.53780 * 87.11201 * 25.36073 * 18 17 16 20 20 C 1.53177 * 109.54304 * 169.55553 * 14 13 3 21 21 C 1.53281 * 109.06509 * 297.02645 * 20 14 13 22 22 O 1.42908 * 109.46325 * 302.44827 * 21 20 14 23 23 C 1.42908 * 114.09411 * 61.15564 * 22 21 20 24 24 C 1.53090 * 109.41348 * 298.84022 * 23 22 21 25 25 H 1.09001 * 109.46987 * 274.13723 * 1 2 3 26 26 H 1.08998 * 109.46957 * 34.13526 * 1 2 3 27 27 H 1.09000 * 109.47423 * 154.13390 * 1 2 3 28 28 H 1.09006 * 109.46946 * 240.00031 * 2 1 3 29 29 H 1.09003 * 109.47177 * 120.00315 * 2 1 3 30 30 H 0.96993 * 120.00501 * 179.97438 * 8 7 5 31 31 H 1.00904 * 111.00075 * 143.47790 * 13 3 2 32 32 H 1.09000 * 109.46896 * 64.99926 * 15 14 13 33 33 H 1.08996 * 109.46855 * 185.00223 * 15 14 13 34 34 H 1.09006 * 112.85064 * 45.33826 * 16 15 14 35 35 H 1.09006 * 113.61353 * 334.56835 * 17 16 15 36 36 H 1.08998 * 113.61782 * 105.47190 * 17 16 15 37 37 H 1.09011 * 113.53833 * 270.81138 * 18 17 16 38 38 H 1.08999 * 113.74830 * 139.94232 * 18 17 16 39 39 H 1.08996 * 113.61460 * 220.09554 * 19 18 17 40 40 H 1.09002 * 113.61520 * 89.18836 * 19 18 17 41 41 H 1.08993 * 109.52671 * 57.01955 * 20 14 13 42 42 H 1.09000 * 109.52050 * 177.21283 * 20 14 13 43 43 H 1.08998 * 109.46065 * 182.44848 * 21 20 14 44 44 H 1.08999 * 109.46605 * 62.44724 * 21 20 14 45 45 H 1.09008 * 109.47932 * 178.86098 * 23 22 21 46 46 H 1.09001 * 109.49149 * 58.83224 * 23 22 21 47 47 H 1.08997 * 109.52426 * 297.70318 * 24 23 22 48 48 H 1.09007 * 109.57063 * 177.54536 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.2250 2.1160 -0.2649 5 6 3.1537 1.5815 -1.0058 6 1 4.1353 1.8969 -0.6842 7 6 2.9179 1.3116 -2.3371 8 7 1.7226 0.9276 -2.7286 9 14 4.2963 1.4915 -3.5849 10 1 5.0233 0.2024 -3.7087 11 1 3.7248 1.8660 -4.9034 12 1 5.2368 2.5488 -3.1347 13 7 2.5426 1.7841 1.3374 14 6 1.4897 2.4039 2.1530 15 6 1.1812 3.8022 1.6139 16 6 2.4710 4.6232 1.5582 17 6 2.8103 5.3282 2.8820 18 6 3.2451 6.5372 2.0338 19 6 2.2845 6.0228 0.9487 20 6 1.9618 2.5077 3.6065 21 6 2.1920 1.0970 4.1601 22 8 0.9853 0.3394 4.0499 23 6 0.5226 0.1710 2.7083 24 6 0.2243 1.5425 2.0970 25 1 -0.3633 0.0741 1.0250 26 1 -0.3633 0.8506 -0.5767 27 1 -0.3634 -0.9247 -0.4483 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.5566 0.7381 -3.6652 31 1 3.3528 2.3825 1.2773 32 1 0.7588 3.7205 0.6124 33 1 0.4650 4.2951 2.2713 34 1 3.3073 4.0692 1.1316 35 1 1.9397 5.5244 3.5078 36 1 3.6290 4.8602 3.4287 37 1 4.2940 6.5070 1.7384 38 1 2.9520 7.4981 2.4566 39 1 2.6793 6.1145 -0.0631 40 1 1.2699 6.4092 1.0450 41 1 2.8922 3.0738 3.6478 42 1 1.2005 3.0122 4.2015 43 1 2.4863 1.1615 5.2076 44 1 2.9817 0.6075 3.5901 45 1 -0.3859 -0.4315 2.7101 46 1 1.2903 -0.3305 2.1191 47 1 -0.5719 2.0276 2.6616 48 1 -0.0872 1.4199 1.0596 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162266.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:27 Heat of formation + Delta-G solvation = 8.644592 kcal Electronic energy + Delta-G solvation = -25085.474133 eV Core-core repulsion = 21949.440786 eV Total energy + Delta-G solvation = -3136.033347 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.24438 -38.24678 -36.15179 -33.81257 -32.35680 -30.58465 -29.57967 -28.32888 -25.80645 -25.46221 -24.15611 -23.04531 -22.75297 -21.43970 -20.19397 -19.03729 -17.82432 -16.68653 -15.92020 -15.77047 -15.10733 -14.93443 -14.58892 -14.43190 -14.20280 -13.61800 -13.36590 -12.72188 -12.52494 -12.44881 -12.24076 -12.20143 -11.76264 -11.70589 -11.43704 -11.17893 -10.92319 -10.84848 -10.78018 -10.77628 -10.60009 -10.37094 -10.18616 -10.08807 -9.97521 -9.83849 -9.50549 -9.18037 -9.13711 -8.79213 -8.70559 -8.31252 -7.17982 -6.03750 -4.09351 3.27301 3.34625 3.36802 4.38961 4.44146 4.84238 4.89734 4.93363 5.07405 5.20552 5.28318 5.30096 5.50487 5.60390 5.65446 5.78558 5.85745 5.87455 5.92497 5.97497 6.02991 6.09721 6.12079 6.16323 6.21020 6.29366 6.35808 6.36777 6.38856 6.45912 6.50875 6.58271 6.62915 6.66711 6.79942 6.82598 6.90635 7.09728 7.26677 7.47232 7.51868 7.79933 7.82036 7.96308 8.23809 8.40244 8.69939 9.03872 9.56046 11.02246 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.012695 B = 0.008276 C = 0.005696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.988229 B = 3382.499467 C = 4914.134914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C 0.216 3.784 4 H 0.014 0.986 5 C -0.522 4.522 6 H 0.055 0.945 7 C 0.065 3.935 8 N -0.881 5.881 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.679 5.679 14 C 0.121 3.879 15 C -0.131 4.131 16 C -0.103 4.103 17 C -0.135 4.135 18 C -0.144 4.144 19 C -0.137 4.137 20 C -0.138 4.138 21 C 0.070 3.930 22 O -0.398 6.398 23 C 0.050 3.950 24 C -0.181 4.181 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.027 0.973 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.259 0.741 31 H 0.331 0.669 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.062 0.938 45 H 0.075 0.925 46 H 0.091 0.909 47 H 0.051 0.949 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.902 5.395 10.011 11.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.138 4.138 3 C 0.109 3.891 4 H 0.031 0.969 5 C -0.560 4.560 6 H 0.073 0.927 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.201 1.201 13 N -0.312 5.312 14 C 0.029 3.971 15 C -0.170 4.170 16 C -0.121 4.121 17 C -0.172 4.172 18 C -0.182 4.182 19 C -0.175 4.175 20 C -0.176 4.176 21 C -0.007 4.007 22 O -0.317 6.317 23 C -0.025 4.025 24 C -0.218 4.218 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.151 0.849 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.109 0.891 47 H 0.070 0.930 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.204 4.631 10.245 11.307 hybrid contribution 0.708 1.218 -1.578 2.116 sum -0.496 5.849 8.666 10.467 Atomic orbital electron populations 1.22687 0.99391 1.00247 1.00237 1.21785 0.92471 0.99547 1.00028 1.19261 0.94797 0.92204 0.82845 0.96878 1.21339 0.96610 1.46059 0.92018 0.92691 1.24865 0.95363 0.95230 0.98275 1.69982 1.20296 1.45532 1.16102 0.86662 0.82418 0.78347 0.80907 1.20774 1.21422 1.20107 1.61039 1.06590 1.46282 1.17248 1.20782 0.92567 0.91196 0.92539 1.22177 0.96571 0.96577 1.01711 1.22507 0.99012 0.94666 0.95957 1.23067 1.00791 0.96768 0.96607 1.22849 0.99567 0.97680 0.98063 1.22892 0.99230 0.96895 0.98465 1.22285 1.01416 0.97709 0.96208 1.22424 0.87532 0.91209 0.99513 1.87779 1.42116 1.73738 1.28073 1.23147 0.99971 0.96476 0.82924 1.23257 0.96819 0.96408 1.05327 0.91854 0.92586 0.95389 0.91040 0.93627 0.93108 0.84878 0.91238 0.92957 0.88577 0.90648 0.91787 0.90523 0.92213 0.91637 0.90751 0.91111 0.92375 0.90884 0.91962 0.90688 0.89131 0.93044 0.85998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.39 8.01 37.16 0.30 -3.09 16 2 C -0.10 -2.24 4.53 -26.73 -0.12 -2.36 16 3 C 0.22 4.90 1.81 -68.86 -0.12 4.78 16 4 H 0.01 0.34 4.69 -51.93 -0.24 0.10 16 5 C -0.52 -13.37 8.51 -34.44 -0.29 -13.66 16 6 H 0.05 1.41 7.50 -52.49 -0.39 1.02 16 7 C 0.07 1.72 5.00 -17.82 -0.09 1.63 16 8 N -0.88 -23.91 11.84 55.43 0.66 -23.26 16 9 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.68 -13.01 4.77 -94.06 -0.45 -13.46 16 14 C 0.12 2.02 0.31 -131.42 -0.04 1.98 16 15 C -0.13 -2.12 3.99 -26.73 -0.11 -2.23 16 16 C -0.10 -1.53 3.14 -89.81 -0.28 -1.82 16 17 C -0.14 -1.68 5.93 -25.83 -0.15 -1.84 16 18 C -0.14 -1.74 8.09 -25.83 -0.21 -1.95 16 19 C -0.14 -1.91 7.65 -25.92 -0.20 -2.10 16 20 C -0.14 -2.04 4.41 -26.49 -0.12 -2.16 16 21 C 0.07 1.08 6.68 37.30 0.25 1.33 16 22 O -0.40 -6.89 10.77 -35.23 -0.38 -7.27 16 23 C 0.05 0.86 4.83 37.20 0.18 1.04 16 24 C -0.18 -3.11 3.82 -26.59 -0.10 -3.21 16 25 H 0.06 1.11 2.73 -51.93 -0.14 0.97 16 26 H 0.06 1.22 7.00 -51.93 -0.36 0.86 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 1.84 6.33 -51.93 -0.33 1.52 16 29 H 0.05 0.99 5.02 -51.93 -0.26 0.72 16 30 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.33 6.41 5.64 -39.29 -0.22 6.19 16 32 H 0.07 1.31 6.66 -51.93 -0.35 0.96 16 33 H 0.05 0.78 7.87 -51.93 -0.41 0.38 16 34 H 0.10 1.63 6.00 -51.93 -0.31 1.32 16 35 H 0.07 0.91 7.92 -51.93 -0.41 0.50 16 36 H 0.06 0.77 7.18 -51.93 -0.37 0.40 16 37 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 41 H 0.07 0.98 5.59 -51.93 -0.29 0.69 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.06 1.03 7.75 -51.93 -0.40 0.62 16 45 H 0.08 1.19 7.48 -51.92 -0.39 0.80 16 46 H 0.09 1.70 3.91 -51.93 -0.20 1.50 16 47 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 48 H 0.12 2.27 2.63 -55.06 -0.14 2.13 16 LS Contribution 330.26 15.07 4.98 4.98 Total: -1.00 -25.98 330.26 -9.07 -35.06 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -7.75 Total: 11.90 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: -1.11 Total: -23.66 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.21 Total: -36.71 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -0.38 Total: -7.27 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -25.98 -9.07 -35.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162266.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.702 kcal (2) G-P(sol) polarization free energy of solvation -25.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds