Wall clock time and date at job start Tue Mar 31 2020 06:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47429 * 2 1 4 4 H 1.09006 * 109.46995 * 345.06414 * 3 2 1 5 5 C 1.50702 * 109.47412 * 225.06359 * 3 2 1 6 6 H 1.08001 * 119.99278 * 239.72903 * 5 3 2 7 7 C 1.37871 * 119.99862 * 59.99551 * 5 3 2 8 8 N 1.31512 * 120.00481 * 359.73147 * 7 5 3 9 9 Si 1.86802 * 119.99802 * 179.72455 * 7 5 3 10 10 H 1.48506 * 109.47069 * 90.00180 * 9 7 5 11 11 H 1.48501 * 109.47439 * 210.00293 * 9 7 5 12 12 H 1.48503 * 109.47341 * 330.00608 * 9 7 5 13 13 N 1.46902 * 109.47053 * 105.05922 * 3 2 1 14 14 C 1.46895 * 111.00281 * 267.43675 * 13 3 2 15 15 C 1.53003 * 109.54288 * 289.73404 * 14 13 3 16 16 C 1.52995 * 109.46821 * 304.99590 * 15 14 13 17 17 C 1.53776 * 113.61854 * 274.13858 * 16 15 14 18 18 C 1.53951 * 87.02247 * 220.05020 * 17 16 15 19 19 C 1.53780 * 87.11201 * 25.36073 * 18 17 16 20 20 C 1.53177 * 109.54304 * 169.55553 * 14 13 3 21 21 C 1.53281 * 109.06509 * 297.02645 * 20 14 13 22 22 O 1.42908 * 109.46325 * 302.44827 * 21 20 14 23 23 C 1.42908 * 114.09411 * 61.15564 * 22 21 20 24 24 C 1.53090 * 109.41348 * 298.84022 * 23 22 21 25 25 H 1.09001 * 109.46987 * 274.13723 * 1 2 3 26 26 H 1.08998 * 109.46957 * 34.13526 * 1 2 3 27 27 H 1.09000 * 109.47423 * 154.13390 * 1 2 3 28 28 H 1.09006 * 109.46946 * 240.00031 * 2 1 3 29 29 H 1.09003 * 109.47177 * 120.00315 * 2 1 3 30 30 H 0.96993 * 120.00501 * 179.97438 * 8 7 5 31 31 H 1.00904 * 111.00075 * 143.47790 * 13 3 2 32 32 H 1.09000 * 109.46896 * 64.99926 * 15 14 13 33 33 H 1.08996 * 109.46855 * 185.00223 * 15 14 13 34 34 H 1.09006 * 112.85064 * 45.33826 * 16 15 14 35 35 H 1.09006 * 113.61353 * 334.56835 * 17 16 15 36 36 H 1.08998 * 113.61782 * 105.47190 * 17 16 15 37 37 H 1.09011 * 113.53833 * 270.81138 * 18 17 16 38 38 H 1.08999 * 113.74830 * 139.94232 * 18 17 16 39 39 H 1.08996 * 113.61460 * 220.09554 * 19 18 17 40 40 H 1.09002 * 113.61520 * 89.18836 * 19 18 17 41 41 H 1.08993 * 109.52671 * 57.01955 * 20 14 13 42 42 H 1.09000 * 109.52050 * 177.21283 * 20 14 13 43 43 H 1.08998 * 109.46065 * 182.44848 * 21 20 14 44 44 H 1.08999 * 109.46605 * 62.44724 * 21 20 14 45 45 H 1.09008 * 109.47932 * 178.86098 * 23 22 21 46 46 H 1.09001 * 109.49149 * 58.83224 * 23 22 21 47 47 H 1.08997 * 109.52426 * 297.70318 * 24 23 22 48 48 H 1.09007 * 109.57063 * 177.54536 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.2250 2.1160 -0.2649 5 6 3.1537 1.5815 -1.0058 6 1 4.1353 1.8969 -0.6842 7 6 2.9179 1.3116 -2.3371 8 7 1.7226 0.9276 -2.7286 9 14 4.2963 1.4915 -3.5849 10 1 5.0233 0.2024 -3.7087 11 1 3.7248 1.8660 -4.9034 12 1 5.2368 2.5488 -3.1347 13 7 2.5426 1.7841 1.3374 14 6 1.4897 2.4039 2.1530 15 6 1.1812 3.8022 1.6139 16 6 2.4710 4.6232 1.5582 17 6 2.8103 5.3282 2.8820 18 6 3.2451 6.5372 2.0338 19 6 2.2845 6.0228 0.9487 20 6 1.9618 2.5077 3.6065 21 6 2.1920 1.0970 4.1601 22 8 0.9853 0.3394 4.0499 23 6 0.5226 0.1710 2.7083 24 6 0.2243 1.5425 2.0970 25 1 -0.3633 0.0741 1.0250 26 1 -0.3633 0.8506 -0.5767 27 1 -0.3634 -0.9247 -0.4483 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.5566 0.7381 -3.6652 31 1 3.3528 2.3825 1.2773 32 1 0.7588 3.7205 0.6124 33 1 0.4650 4.2951 2.2713 34 1 3.3073 4.0692 1.1316 35 1 1.9397 5.5244 3.5078 36 1 3.6290 4.8602 3.4287 37 1 4.2940 6.5070 1.7384 38 1 2.9520 7.4981 2.4566 39 1 2.6793 6.1145 -0.0631 40 1 1.2699 6.4092 1.0450 41 1 2.8922 3.0738 3.6478 42 1 1.2005 3.0122 4.2015 43 1 2.4863 1.1615 5.2076 44 1 2.9817 0.6075 3.5901 45 1 -0.3859 -0.4315 2.7101 46 1 1.2903 -0.3305 2.1191 47 1 -0.5719 2.0276 2.6616 48 1 -0.0872 1.4199 1.0596 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162266.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:27 Heat of formation + Delta-G solvation = -5.318951 kcal Electronic energy + Delta-G solvation = -25086.079637 eV Core-core repulsion = 21949.440786 eV Total energy + Delta-G solvation = -3136.638851 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.61765 -39.41383 -37.67421 -35.38747 -34.11639 -32.24773 -30.93789 -29.66870 -27.69952 -26.52822 -25.41109 -24.56621 -24.35117 -22.66978 -21.87865 -20.16254 -19.33533 -18.56406 -17.28880 -17.13256 -16.68484 -16.30271 -16.00982 -15.83671 -15.71702 -14.98312 -14.71234 -14.37225 -13.99980 -13.82995 -13.72148 -13.43095 -13.28797 -13.08548 -12.79517 -12.76994 -12.70790 -12.58446 -12.33093 -12.25373 -11.99238 -11.80019 -11.70057 -11.51321 -11.32021 -11.02781 -10.92809 -10.77389 -10.68821 -10.47694 -10.27625 -10.11761 -8.78668 -8.07289 -6.17767 1.38618 1.41151 1.48511 2.42778 3.15566 3.22297 3.60887 3.75654 3.80441 3.85685 4.01166 4.07234 4.21088 4.31596 4.34189 4.53923 4.61170 4.62790 4.68446 4.72688 4.76899 4.82836 4.86081 4.90819 4.92357 4.95097 5.02716 5.08536 5.10182 5.16021 5.16638 5.20898 5.26764 5.33005 5.39521 5.44316 5.48145 5.55708 5.69156 5.69465 5.77473 5.83013 6.08077 6.33946 6.50514 6.61319 6.94281 7.16439 7.51007 8.97330 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.012695 B = 0.008276 C = 0.005696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.988229 B = 3382.499467 C = 4914.134914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.092 4.092 3 C 0.230 3.770 4 H -0.013 1.013 5 C -0.534 4.534 6 H 0.050 0.950 7 C 0.020 3.980 8 N -0.904 5.904 9 Si 0.944 3.056 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.673 5.673 14 C 0.119 3.881 15 C -0.123 4.123 16 C -0.111 4.111 17 C -0.122 4.122 18 C -0.134 4.134 19 C -0.143 4.143 20 C -0.129 4.129 21 C 0.066 3.934 22 O -0.404 6.404 23 C 0.053 3.947 24 C -0.182 4.182 25 H 0.092 0.908 26 H 0.032 0.968 27 H 0.029 0.971 28 H 0.032 0.968 29 H 0.055 0.945 30 H 0.257 0.743 31 H 0.330 0.670 32 H 0.033 0.967 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.048 0.952 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.101 0.899 44 H 0.047 0.953 45 H 0.090 0.910 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.594 6.392 12.216 13.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.130 4.130 3 C 0.121 3.879 4 H 0.005 0.995 5 C -0.573 4.573 6 H 0.068 0.932 7 C -0.180 4.180 8 N -0.543 5.543 9 Si 0.771 3.229 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.196 1.196 13 N -0.306 5.306 14 C 0.027 3.973 15 C -0.162 4.162 16 C -0.130 4.130 17 C -0.159 4.159 18 C -0.171 4.171 19 C -0.181 4.181 20 C -0.167 4.167 21 C -0.011 4.011 22 O -0.323 6.323 23 C -0.022 4.022 24 C -0.219 4.219 25 H 0.110 0.890 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.150 0.850 32 H 0.052 0.948 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.119 0.881 44 H 0.066 0.934 45 H 0.107 0.893 46 H 0.090 0.910 47 H 0.084 0.916 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.887 5.633 12.463 13.706 hybrid contribution 0.608 0.919 -2.243 2.499 sum -0.279 6.553 10.220 12.143 Atomic orbital electron populations 1.22568 0.97682 0.99241 1.01657 1.21632 0.93972 0.98908 0.98506 1.18947 0.93037 0.91801 0.84071 0.99535 1.21693 0.97155 1.45454 0.92989 0.93198 1.25516 0.97193 0.95293 0.99967 1.70096 1.21695 1.46415 1.16106 0.85784 0.80113 0.78217 0.78795 1.20644 1.21433 1.19637 1.60985 1.07271 1.46925 1.15387 1.20890 0.91720 0.91162 0.93526 1.22076 0.97497 0.96742 0.99884 1.22468 0.97443 0.94756 0.98315 1.23008 1.01511 0.96047 0.95329 1.22805 0.99090 0.98486 0.96748 1.22941 1.00239 0.96605 0.98277 1.22222 1.02396 0.97812 0.94246 1.22582 0.86462 0.90965 1.01068 1.87778 1.42792 1.74152 1.27604 1.23039 0.99962 0.96270 0.82931 1.23209 0.97450 0.96929 1.04350 0.89005 0.94892 0.95209 0.94891 0.92702 0.93398 0.85030 0.94841 0.91258 0.91025 0.89376 0.90864 0.90396 0.90275 0.93357 0.90084 0.89834 0.90940 0.88090 0.93418 0.89250 0.91042 0.91647 0.87881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.34 8.01 71.98 0.58 -5.77 16 2 C -0.09 -4.23 4.53 30.59 0.14 -4.09 16 3 C 0.23 10.75 1.81 44.17 0.08 10.83 16 4 H -0.01 -0.67 4.69 -2.38 -0.01 -0.68 16 5 C -0.53 -28.18 8.51 25.60 0.22 -27.97 16 6 H 0.05 2.62 7.50 -2.91 -0.02 2.60 16 7 C 0.02 1.10 5.00 84.65 0.42 1.52 16 8 N -0.90 -50.73 11.84 21.44 0.25 -50.48 16 9 Si 0.94 43.38 29.54 68.60 2.03 45.40 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 13 N -0.67 -25.94 4.77 -451.50 -2.15 -28.10 16 14 C 0.12 3.84 0.31 3.65 0.00 3.84 16 15 C -0.12 -3.90 3.99 30.59 0.12 -3.78 16 16 C -0.11 -3.22 3.14 -10.27 -0.03 -3.25 16 17 C -0.12 -2.68 5.93 31.18 0.18 -2.49 16 18 C -0.13 -2.89 8.09 31.18 0.25 -2.64 16 19 C -0.14 -3.85 7.65 31.12 0.24 -3.61 16 20 C -0.13 -3.45 4.41 30.75 0.14 -3.31 16 21 C 0.07 1.84 6.68 72.08 0.48 2.32 16 22 O -0.40 -12.96 10.77 -148.98 -1.60 -14.57 16 23 C 0.05 1.75 4.83 72.01 0.35 2.09 16 24 C -0.18 -6.05 3.82 30.68 0.12 -5.94 16 25 H 0.09 3.20 2.73 -2.39 -0.01 3.20 16 26 H 0.03 1.48 7.00 -2.39 -0.02 1.47 16 27 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.03 1.75 6.33 -2.38 -0.02 1.74 16 29 H 0.05 2.40 5.02 -2.39 -0.01 2.39 16 30 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 31 H 0.33 12.89 5.64 -89.69 -0.51 12.38 16 32 H 0.03 1.29 6.66 -2.39 -0.02 1.28 16 33 H 0.07 1.94 7.87 -2.39 -0.02 1.92 16 34 H 0.07 2.44 6.00 -2.38 -0.01 2.43 16 35 H 0.09 1.76 7.92 -2.38 -0.02 1.74 16 36 H 0.07 1.50 7.18 -2.39 -0.02 1.48 16 37 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.05 1.43 8.14 -2.39 -0.02 1.42 16 40 H 0.08 2.05 8.10 -2.39 -0.02 2.03 16 41 H 0.08 2.04 5.59 -2.39 -0.01 2.03 16 42 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.05 1.49 7.75 -2.39 -0.02 1.47 16 45 H 0.09 2.64 7.48 -2.38 -0.02 2.63 16 46 H 0.07 2.63 3.91 -2.39 -0.01 2.62 16 47 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.10 3.87 2.63 -5.32 -0.01 3.85 16 Total: -1.00 -56.83 330.26 2.25 -54.58 By element: Atomic # 1 Polarization: 34.95 SS G_CDS: 0.45 Total: 35.40 kcal Atomic # 6 Polarization: -45.53 SS G_CDS: 3.28 Total: -42.24 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -1.90 Total: -78.58 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -1.60 Total: -14.57 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -56.83 2.25 -54.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162266.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.260 kcal (2) G-P(sol) polarization free energy of solvation -56.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds