Wall clock time and date at job start Tue Mar 31 2020 06:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47241 * 2 1 4 4 H 1.08997 * 109.47372 * 302.98718 * 3 2 1 5 5 C 1.50701 * 109.47395 * 182.98289 * 3 2 1 6 6 H 1.07997 * 120.00619 * 240.00026 * 5 3 2 7 7 C 1.37881 * 119.99651 * 59.99863 * 5 3 2 8 8 N 1.31518 * 120.00068 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99841 * 179.97438 * 7 5 3 10 10 H 1.48511 * 109.46924 * 90.00571 * 9 7 5 11 11 H 1.48496 * 109.47061 * 210.00060 * 9 7 5 12 12 H 1.48494 * 109.47480 * 330.00495 * 9 7 5 13 13 N 1.46900 * 109.47006 * 62.98523 * 3 2 1 14 14 C 1.46903 * 110.99941 * 201.96990 * 13 3 2 15 15 C 1.53000 * 115.55130 * 146.74512 * 14 13 3 16 16 H 1.09005 * 109.54440 * 80.58129 * 15 14 13 17 17 C 1.53173 * 109.54677 * 200.76370 * 15 14 13 18 18 C 1.53102 * 109.16018 * 176.75988 * 17 15 14 19 19 O 1.42910 * 109.48476 * 302.52412 * 18 17 15 20 20 C 1.42905 * 114.09790 * 61.10783 * 19 18 17 21 21 C 1.53004 * 109.47988 * 178.85899 * 20 19 18 22 22 C 1.53008 * 109.47665 * 58.82786 * 20 19 18 23 23 C 1.53086 * 109.41592 * 298.84447 * 20 19 18 24 24 C 1.53004 * 117.49909 * 1.03727 * 14 13 3 25 25 C 1.52998 * 59.99929 * 252.50923 * 24 14 13 26 26 H 1.08996 * 109.47196 * 298.67567 * 1 2 3 27 27 H 1.08996 * 109.47092 * 58.67063 * 1 2 3 28 28 H 1.09001 * 109.47149 * 178.67190 * 1 2 3 29 29 H 1.09002 * 109.47057 * 240.00169 * 2 1 3 30 30 H 1.09002 * 109.46859 * 120.00145 * 2 1 3 31 31 H 0.96998 * 119.99959 * 179.97438 * 8 7 5 32 32 H 1.00895 * 111.00243 * 325.92407 * 13 3 2 33 33 H 1.09004 * 109.51797 * 296.74934 * 17 15 14 34 34 H 1.08997 * 109.52383 * 56.93841 * 17 15 14 35 35 H 1.09000 * 109.48417 * 182.49690 * 18 17 15 36 36 H 1.09006 * 109.41697 * 62.50641 * 18 17 15 37 37 H 1.08999 * 109.47096 * 179.97438 * 21 20 19 38 38 H 1.09004 * 109.47071 * 299.94724 * 21 20 19 39 39 H 1.09002 * 109.46518 * 59.94472 * 21 20 19 40 40 H 1.09000 * 109.47052 * 300.05207 * 22 20 19 41 41 H 1.08994 * 109.47292 * 60.05822 * 22 20 19 42 42 H 1.09002 * 109.46688 * 180.02562 * 22 20 19 43 43 H 1.09000 * 109.52029 * 297.70220 * 23 20 19 44 44 H 1.09000 * 109.51895 * 177.51485 * 23 20 19 45 45 H 1.08993 * 117.49469 * 0.02562 * 24 14 13 46 46 H 1.08999 * 117.49275 * 145.01583 * 24 14 13 47 47 H 1.09001 * 117.49810 * 252.50943 * 25 24 14 48 48 H 1.08996 * 117.49757 * 107.48922 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6336 1.9715 -0.8620 5 6 3.5452 1.4431 -0.0739 6 1 4.1245 1.8968 0.7165 7 6 4.1827 0.8644 -1.1508 8 7 3.4772 0.3122 -2.1137 9 14 6.0484 0.8658 -1.2429 10 1 6.5772 -0.3583 -0.5890 11 1 6.4738 0.8902 -2.6654 12 1 6.5775 2.0664 -0.5474 13 7 1.6101 2.1138 1.2339 14 6 1.6064 3.5731 1.0653 15 6 0.5249 4.3246 1.8442 16 1 0.8422 4.4506 2.8794 17 6 0.2962 5.6988 1.2074 18 6 -0.8426 6.4102 1.9430 19 8 -2.0205 5.6025 1.8928 20 6 -1.8788 4.3246 2.5164 21 6 -3.2031 3.5635 2.4270 22 6 -1.4969 4.5136 3.9860 23 6 -0.7832 3.5286 1.8026 24 6 2.0052 4.1271 -0.3040 25 6 2.9580 4.2669 0.8850 26 1 -0.3633 0.4931 0.9016 27 1 -0.3633 0.5343 -0.8778 28 1 -0.3633 -1.0274 -0.0238 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.9257 -0.0946 -2.8715 32 1 0.7044 1.7816 1.5296 33 1 1.2075 6.2919 1.2839 34 1 0.0286 5.5741 0.1582 35 1 -1.0396 7.3703 1.4662 36 1 -0.5571 6.5722 2.9825 37 1 -3.0947 2.5886 2.9023 38 1 -3.9830 4.1304 2.9353 39 1 -3.4750 3.4295 1.3800 40 1 -0.5537 5.0563 4.0494 41 1 -2.2771 5.0803 4.4941 42 1 -1.3884 3.5388 4.4614 43 1 -1.0733 3.3587 0.7657 44 1 -0.6431 2.5711 2.3042 45 1 2.2700 3.4088 -1.0797 46 1 1.4970 5.0271 -0.6501 47 1 3.0767 5.2589 1.3209 48 1 3.8500 3.6406 0.8914 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164839.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:19 Heat of formation + Delta-G solvation = -24.316161 kcal Electronic energy + Delta-G solvation = -24436.025643 eV Core-core repulsion = 21298.563011 eV Total energy + Delta-G solvation = -3137.462632 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.31320 -38.03244 -34.77778 -33.64674 -32.19034 -31.88146 -29.67603 -28.23360 -27.34935 -26.34362 -24.08411 -23.17759 -22.17270 -21.57567 -19.55226 -19.33874 -18.01695 -16.35139 -16.16887 -16.01948 -15.24655 -14.86069 -14.63847 -14.43243 -13.93091 -13.60553 -13.41811 -12.90029 -12.79861 -12.52058 -12.47269 -12.16554 -11.99121 -11.87897 -11.63834 -11.52659 -11.17945 -11.14467 -11.02351 -10.89696 -10.61202 -10.56277 -10.45898 -10.19149 -9.91760 -9.80689 -9.58987 -9.52936 -9.28850 -9.09629 -8.76082 -8.31035 -6.97063 -5.95930 -3.98662 3.32595 3.39405 3.42851 3.78224 4.44383 4.55219 4.73775 4.80567 4.92933 4.99965 5.10382 5.25457 5.32745 5.34961 5.45504 5.49649 5.58826 5.61700 5.68413 5.73643 5.82167 5.86674 5.92347 5.99972 6.07608 6.10701 6.13910 6.15203 6.17937 6.28721 6.36697 6.42697 6.49555 6.56441 6.62566 6.84810 6.99091 7.11391 7.20806 7.32321 7.32918 7.57899 7.79259 7.95409 8.35259 8.41530 8.79347 9.08354 9.65329 11.09452 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023938 B = 0.005246 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.397682 B = 5336.409474 C = 6041.173830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.211 3.789 4 H 0.016 0.984 5 C -0.487 4.487 6 H 0.064 0.936 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.652 5.652 14 C 0.065 3.935 15 C -0.051 4.051 16 H 0.074 0.926 17 C -0.151 4.151 18 C 0.060 3.940 19 O -0.377 6.377 20 C 0.113 3.887 21 C -0.138 4.138 22 C -0.179 4.179 23 C -0.137 4.137 24 C -0.214 4.214 25 C -0.169 4.169 26 H 0.035 0.965 27 H 0.042 0.958 28 H 0.037 0.963 29 H 0.099 0.901 30 H 0.039 0.961 31 H 0.259 0.741 32 H 0.321 0.679 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.120 0.880 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.187 8.492 8.247 15.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.104 3.896 4 H 0.034 0.966 5 C -0.526 4.526 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.719 3.281 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.283 5.283 14 C -0.028 4.028 15 C -0.070 4.070 16 H 0.092 0.908 17 C -0.189 4.189 18 C -0.017 4.017 19 O -0.296 6.296 20 C 0.074 3.926 21 C -0.195 4.195 22 C -0.236 4.236 23 C -0.175 4.175 24 C -0.253 4.253 25 C -0.207 4.207 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.117 0.883 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.142 0.858 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.138 0.862 46 H 0.094 0.906 47 H 0.089 0.911 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.715 8.391 8.282 15.277 hybrid contribution 0.690 -0.042 -0.617 0.927 sum -9.024 8.349 7.664 14.488 Atomic orbital electron populations 1.21893 0.99724 0.99578 0.99600 1.21776 0.91110 1.00541 1.03017 1.19391 0.95270 0.89582 0.85327 0.96623 1.21237 0.90930 1.35346 1.05095 0.91827 1.24934 0.97949 0.95730 0.95854 1.69870 1.34762 1.38932 1.10060 0.86610 0.86188 0.78356 0.76915 1.20893 1.21511 1.19995 1.60629 1.31158 1.00416 1.36048 1.21337 0.94903 0.89285 0.97248 1.20735 0.93332 0.93699 0.99223 0.90810 1.22367 0.98768 0.96604 1.01158 1.22578 0.85789 0.93824 0.99498 1.87929 1.35172 1.27589 1.78912 1.21472 0.95624 0.84016 0.91523 1.21756 0.95434 0.99425 1.02855 1.22449 1.02049 1.02777 0.96322 1.22235 0.94476 0.99083 1.01673 1.23723 1.04620 1.02842 0.94098 1.23184 0.95791 0.99765 1.01980 0.94649 0.93889 0.94421 0.88316 0.94182 0.93155 0.85823 0.90829 0.90491 0.89319 0.93215 0.91077 0.92134 0.91825 0.91756 0.92241 0.91395 0.91026 0.90553 0.86212 0.90581 0.91145 0.87157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.68 37.16 0.36 -2.51 16 2 C -0.13 -2.92 5.39 -26.74 -0.14 -3.07 16 3 C 0.21 5.05 1.60 -68.87 -0.11 4.94 16 4 H 0.02 0.43 5.65 -51.93 -0.29 0.13 16 5 C -0.49 -12.88 6.73 -34.44 -0.23 -13.11 16 6 H 0.06 1.73 6.07 -52.49 -0.32 1.41 16 7 C 0.06 1.50 5.30 -17.82 -0.09 1.41 16 8 N -0.90 -24.99 11.30 55.43 0.63 -24.36 16 9 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.65 -13.51 6.57 -94.25 -0.62 -14.13 16 14 C 0.07 1.20 2.88 -131.60 -0.38 0.82 16 15 C -0.05 -0.75 2.27 -90.44 -0.21 -0.95 16 16 H 0.07 1.07 6.62 -51.93 -0.34 0.73 16 17 C -0.15 -1.99 4.14 -26.59 -0.11 -2.10 16 18 C 0.06 0.70 6.51 37.21 0.24 0.94 16 19 O -0.38 -5.04 10.24 -35.23 -0.36 -5.41 16 20 C 0.11 1.37 1.11 -90.57 -0.10 1.27 16 21 C -0.14 -1.48 8.85 37.16 0.33 -1.15 16 22 C -0.18 -1.92 7.94 37.16 0.29 -1.62 16 23 C -0.14 -1.91 3.48 -26.59 -0.09 -2.00 16 24 C -0.21 -4.19 8.36 -26.73 -0.22 -4.41 16 25 C -0.17 -3.24 9.26 -26.73 -0.25 -3.49 16 26 H 0.03 0.60 6.38 -51.93 -0.33 0.27 16 27 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.10 2.58 6.00 -51.93 -0.31 2.27 16 30 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.32 6.08 3.69 -39.29 -0.14 5.94 16 33 H 0.07 0.92 7.14 -51.93 -0.37 0.55 16 34 H 0.08 1.11 6.54 -51.93 -0.34 0.77 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.53 6.34 -51.93 -0.33 0.20 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.70 4.98 -51.93 -0.26 0.44 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.08 1.07 6.54 -51.93 -0.34 0.73 16 45 H 0.12 2.82 5.22 -51.93 -0.27 2.55 16 46 H 0.08 1.32 5.82 -51.93 -0.30 1.01 16 47 H 0.07 1.16 7.34 -51.93 -0.38 0.78 16 48 H 0.11 2.44 5.57 -51.93 -0.29 2.15 16 LS Contribution 342.07 15.07 5.15 5.15 Total: -1.00 -27.57 342.07 -8.92 -36.48 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -7.99 Total: 11.01 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: -0.71 Total: -25.03 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.01 Total: -38.49 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -0.36 Total: -5.41 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.57 -8.92 -36.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164839.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.168 kcal (2) G-P(sol) polarization free energy of solvation -27.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds