Wall clock time and date at job start Tue Mar 31 2020 06:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46933 * 2 1 4 4 C 1.37101 * 119.99990 * 94.61608 * 3 2 1 5 5 H 1.07995 * 119.99772 * 217.77570 * 4 3 2 6 6 C 1.38952 * 120.00126 * 37.77113 * 4 3 2 7 7 N 1.31408 * 119.99706 * 19.68499 * 6 4 3 8 8 Si 1.86800 * 120.00103 * 199.68832 * 6 4 3 9 9 H 1.48500 * 109.47075 * 59.99846 * 8 6 4 10 10 H 1.48490 * 109.47127 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.46764 * 300.00154 * 8 6 4 12 12 C 1.34774 * 120.00072 * 274.33550 * 3 2 1 13 13 O 1.21297 * 120.00337 * 180.28262 * 12 3 2 14 14 C 1.50703 * 120.00272 * 0.27685 * 12 3 2 15 15 C 1.52994 * 109.47334 * 180.02562 * 14 12 3 16 16 H 1.09001 * 109.47259 * 305.00107 * 15 14 12 17 17 C 1.52999 * 109.47525 * 64.99889 * 15 14 12 18 18 C 1.52994 * 109.47525 * 180.02562 * 17 15 14 19 19 H 1.09001 * 109.47259 * 60.00218 * 18 17 15 20 20 C 1.52994 * 109.47230 * 180.02562 * 18 17 15 21 21 C 1.53007 * 109.47131 * 300.00094 * 18 17 15 22 22 C 1.52999 * 109.46992 * 59.99580 * 21 18 17 23 23 C 1.53004 * 109.46696 * 60.00329 * 22 21 18 24 24 C 1.52998 * 109.47095 * 179.97438 * 22 21 18 25 25 C 1.52998 * 109.47451 * 300.00539 * 22 21 18 26 26 H 1.08999 * 109.46715 * 299.99985 * 1 2 3 27 27 H 1.08998 * 109.47453 * 59.99844 * 1 2 3 28 28 H 1.09001 * 109.47192 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46885 * 240.00540 * 2 1 3 30 30 H 1.08998 * 109.47453 * 120.00156 * 2 1 3 31 31 H 0.97000 * 120.00028 * 179.97438 * 7 6 4 32 32 H 1.09008 * 109.46627 * 300.00320 * 14 12 3 33 33 H 1.08997 * 109.46906 * 59.99808 * 14 12 3 34 34 H 1.09003 * 109.47259 * 300.00246 * 17 15 14 35 35 H 1.09008 * 109.47016 * 59.99717 * 17 15 14 36 36 H 1.09003 * 109.47647 * 60.00030 * 20 18 17 37 37 H 1.09004 * 109.47524 * 179.97438 * 20 18 17 38 38 H 1.08994 * 109.47444 * 300.00141 * 20 18 17 39 39 H 1.08993 * 109.47098 * 179.97438 * 21 18 17 40 40 H 1.09001 * 109.47150 * 300.00191 * 21 18 17 41 41 H 1.08993 * 109.47513 * 59.99801 * 23 22 21 42 42 H 1.09001 * 109.47045 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.47393 * 299.99554 * 23 22 21 44 44 H 1.08996 * 109.47117 * 60.00107 * 24 22 21 45 45 H 1.09001 * 109.46989 * 180.02562 * 24 22 21 46 46 H 1.09002 * 109.46867 * 300.00194 * 24 22 21 47 47 H 1.09001 * 109.47002 * 299.99579 * 25 22 21 48 48 H 1.09002 * 109.46988 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3368 1.9957 1.1835 5 1 2.1092 3.0416 1.3272 6 6 2.9525 1.2728 2.1980 7 7 3.5738 0.1488 1.9198 8 14 2.8968 1.8987 3.9571 9 1 1.4834 2.0060 4.3998 10 1 3.6229 0.9530 4.8422 11 1 3.5403 3.2352 4.0275 12 6 2.1597 2.0460 -1.1638 13 8 2.5688 3.1879 -1.1643 14 6 1.8096 1.3706 -2.4648 15 6 2.0600 2.3366 -3.6245 16 1 1.5088 3.2612 -3.4527 17 6 3.5557 2.6446 -3.7180 18 6 3.8060 3.6111 -4.8773 19 1 3.2549 4.5356 -4.7050 20 6 5.3018 3.9185 -4.9711 21 6 3.3342 2.9721 -6.1850 22 6 1.8384 2.6642 -6.0915 23 6 1.0648 3.9619 -5.8497 24 6 1.3664 2.0258 -7.3993 25 6 1.5881 1.6977 -4.9321 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 4.0039 -0.3557 2.6279 32 1 2.4294 0.4829 -2.5915 33 1 0.7588 1.0814 -2.4527 34 1 3.8919 3.1002 -2.7866 35 1 4.1070 1.7200 -3.8898 36 1 5.8528 2.9938 -5.1436 37 1 5.4803 4.6067 -5.7974 38 1 5.6385 4.3734 -4.0397 39 1 3.5121 3.6608 -7.0108 40 1 3.8853 2.0476 -6.3572 41 1 1.2430 4.6504 -6.6755 42 1 -0.0009 3.7426 -5.7835 43 1 1.4009 4.4171 -4.9181 44 1 1.9175 1.1014 -7.5721 45 1 0.3007 1.8068 -7.3329 46 1 1.5446 2.7148 -8.2250 47 1 2.1392 0.7732 -5.1043 48 1 0.5225 1.4780 -4.8658 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066352617.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:11 Heat of formation + Delta-G solvation = -74.665328 kcal Electronic energy + Delta-G solvation = -23853.611633 eV Core-core repulsion = 20713.965698 eV Total energy + Delta-G solvation = -3139.645936 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.84057 -38.23008 -35.02573 -33.79608 -32.98963 -31.87647 -29.37141 -27.51928 -27.17406 -26.41800 -25.95676 -24.50163 -22.20654 -20.66636 -20.24885 -18.48881 -18.20586 -16.68397 -15.81146 -15.19838 -14.86000 -14.74620 -14.38497 -14.26401 -13.93934 -13.52007 -13.32692 -12.83550 -12.66613 -12.57505 -12.27696 -12.04991 -12.03416 -11.76554 -11.69530 -11.54868 -11.44443 -11.26904 -11.01811 -10.95314 -10.89187 -10.60831 -10.59278 -10.42836 -10.30111 -10.23055 -10.04322 -9.79412 -9.64971 -9.57336 -8.85856 -8.16733 -7.36568 -6.25899 -3.91130 3.22738 3.27962 3.31716 4.02985 4.21499 4.72611 4.77950 4.89381 5.03373 5.10548 5.20585 5.36953 5.45811 5.55483 5.62857 5.66932 5.70228 5.72481 5.82629 5.88818 5.90139 5.93699 5.99525 6.02389 6.03545 6.09275 6.15816 6.20518 6.23964 6.27692 6.29136 6.32675 6.34865 6.45812 6.52105 6.57043 6.60884 6.67623 6.72777 6.93240 7.00803 7.11264 7.30900 7.64492 8.35286 8.60467 9.28311 9.50613 10.13199 10.78331 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024473 B = 0.004494 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.832807 B = 6228.573942 C = 6828.114962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.100 3.900 3 N -0.445 5.445 4 C -0.306 4.306 5 H 0.087 0.913 6 C 0.036 3.964 7 N -0.873 5.873 8 Si 0.916 3.084 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.462 3.538 13 O -0.579 6.579 14 C -0.131 4.131 15 C -0.066 4.066 16 H 0.076 0.924 17 C -0.111 4.111 18 C -0.091 4.091 19 H 0.070 0.930 20 C -0.145 4.145 21 C -0.100 4.100 22 C -0.064 4.064 23 C -0.145 4.145 24 C -0.140 4.140 25 C -0.103 4.103 26 H 0.055 0.945 27 H 0.042 0.958 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.107 0.893 31 H 0.267 0.733 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.048 0.952 36 H 0.050 0.950 37 H 0.046 0.954 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.048 0.952 42 H 0.050 0.950 43 H 0.066 0.934 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.050 0.950 47 H 0.058 0.942 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.558 0.100 -14.239 14.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.025 4.025 3 N -0.164 5.164 4 C -0.434 4.434 5 H 0.105 0.895 6 C -0.168 4.168 7 N -0.512 5.512 8 Si 0.743 3.257 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.198 1.198 12 C 0.251 3.749 13 O -0.462 6.462 14 C -0.172 4.172 15 C -0.085 4.085 16 H 0.094 0.906 17 C -0.149 4.149 18 C -0.110 4.110 19 H 0.088 0.912 20 C -0.202 4.202 21 C -0.138 4.138 22 C -0.064 4.064 23 C -0.202 4.202 24 C -0.197 4.197 25 C -0.140 4.140 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.125 0.875 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.243 0.506 -14.111 14.488 hybrid contribution -0.028 -0.065 0.900 0.902 sum -3.271 0.442 -13.212 13.618 Atomic orbital electron populations 1.22209 0.98419 1.00182 1.01423 1.21491 0.91532 0.85799 1.03642 1.43504 1.56255 1.11805 1.04878 1.19350 1.37424 0.96746 0.89860 0.89487 1.25351 0.94412 0.96582 1.00407 1.69908 1.31616 1.16404 1.33250 0.86169 0.78415 0.78779 0.82359 1.19997 1.21051 1.19816 1.20376 0.81723 0.87882 0.84929 1.90466 1.49930 1.18960 1.86882 1.21702 1.01759 0.99364 0.94332 1.20859 0.97061 0.98468 0.92117 0.90596 1.21739 0.95409 0.98467 0.99250 1.21156 0.95626 0.99254 0.94947 0.91167 1.21806 0.96240 1.00918 1.01284 1.21647 0.94650 1.00220 0.97260 1.20506 0.95382 0.95650 0.94832 1.21981 0.99549 0.96746 1.01973 1.21861 1.00821 1.00275 0.96732 1.21672 1.00471 0.97818 0.94084 0.92548 0.93924 0.93258 0.93481 0.87513 0.92342 0.90597 0.90832 0.89207 0.93311 0.93107 0.93440 0.92554 0.92732 0.92340 0.93308 0.93077 0.91478 0.92913 0.92902 0.93074 0.92297 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 10.16 37.16 0.38 -2.61 16 2 C 0.10 2.18 5.43 -4.04 -0.02 2.16 16 3 N -0.44 -11.31 2.53 -114.81 -0.29 -11.60 16 4 C -0.31 -8.54 8.90 -14.93 -0.13 -8.67 16 5 H 0.09 2.55 7.77 -52.49 -0.41 2.14 16 6 C 0.04 0.96 4.95 -17.47 -0.09 0.88 16 7 N -0.87 -23.79 11.44 55.50 0.63 -23.16 16 8 Si 0.92 20.85 29.60 -169.99 -5.03 15.82 16 9 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 C 0.46 11.19 7.32 -10.98 -0.08 11.11 16 13 O -0.58 -15.72 13.84 5.54 0.08 -15.64 16 14 C -0.13 -2.43 3.78 -27.88 -0.11 -2.54 16 15 C -0.07 -1.09 1.56 -90.62 -0.14 -1.23 16 16 H 0.08 1.37 6.24 -51.93 -0.32 1.04 16 17 C -0.11 -1.89 4.22 -26.73 -0.11 -2.01 16 18 C -0.09 -1.29 2.45 -90.62 -0.22 -1.51 16 19 H 0.07 1.03 6.43 -51.93 -0.33 0.70 16 20 C -0.15 -1.89 9.19 37.15 0.34 -1.55 16 21 C -0.10 -1.20 4.01 -26.73 -0.11 -1.31 16 22 C -0.06 -0.74 0.77 -154.51 -0.12 -0.86 16 23 C -0.15 -1.71 7.78 37.16 0.29 -1.42 16 24 C -0.14 -1.39 8.47 37.16 0.31 -1.07 16 25 C -0.10 -1.35 4.01 -26.73 -0.11 -1.46 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.04 0.73 6.69 -51.93 -0.35 0.38 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.94 6.62 -51.93 -0.34 0.60 16 30 H 0.11 2.59 5.53 -51.93 -0.29 2.30 16 31 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.08 1.36 7.40 -51.92 -0.38 0.98 16 33 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 34 H 0.09 1.89 5.95 -51.93 -0.31 1.58 16 35 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.90 4.81 -51.93 -0.25 0.65 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 356.24 15.07 5.37 5.37 Total: -1.00 -29.48 356.24 -7.96 -37.45 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -8.81 Total: 3.87 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: 0.09 Total: -12.10 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.34 Total: -34.75 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.08 Total: -15.64 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.48 -7.96 -37.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066352617.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.220 kcal (2) G-P(sol) polarization free energy of solvation -29.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds