Wall clock time and date at job start Tue Mar 31 2020 05:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08992 * 109.47435 * 2 1 4 4 C 1.53006 * 109.46947 * 239.99896 * 2 1 3 5 5 C 1.53000 * 109.46917 * 180.02562 * 4 2 1 6 6 H 1.09003 * 109.47307 * 299.99413 * 5 4 2 7 7 C 1.53006 * 109.46917 * 180.02562 * 5 4 2 8 8 C 1.50701 * 109.46983 * 64.99800 * 7 5 4 9 9 O 1.21282 * 119.99861 * 0.02562 * 8 7 5 10 10 N 1.34774 * 120.00042 * 179.97438 * 8 7 5 11 11 C 1.46510 * 119.99995 * 0.02562 * 10 8 7 12 12 C 1.46500 * 120.00273 * 179.97438 * 10 8 7 13 13 C 1.50695 * 109.47109 * 270.00155 * 12 10 8 14 14 H 1.07995 * 120.00496 * 359.97438 * 13 12 10 15 15 C 1.37880 * 119.99572 * 179.97438 * 13 12 10 16 16 N 1.31511 * 120.00327 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99951 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 59.99744 * 17 15 13 19 19 H 1.48503 * 109.47261 * 299.99924 * 17 15 13 20 20 H 1.48500 * 109.47454 * 179.97438 * 17 15 13 21 21 C 1.52995 * 109.47419 * 59.99867 * 5 4 2 22 22 C 1.52993 * 109.47404 * 300.00073 * 21 5 4 23 23 C 1.53006 * 109.46976 * 299.99993 * 22 21 5 24 24 C 1.52995 * 109.47404 * 180.02562 * 22 21 5 25 25 C 1.52999 * 109.47358 * 59.99871 * 22 21 5 26 26 H 1.09002 * 109.47357 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47032 * 300.00598 * 1 2 3 28 28 H 1.09002 * 109.47019 * 59.99815 * 1 2 3 29 29 H 1.08994 * 109.47034 * 60.00581 * 4 2 1 30 30 H 1.09002 * 109.47162 * 300.00205 * 4 2 1 31 31 H 1.08993 * 109.47061 * 305.00004 * 7 5 4 32 32 H 1.09000 * 109.46856 * 184.99673 * 7 5 4 33 33 H 1.08996 * 109.46959 * 270.00194 * 11 10 8 34 34 H 1.09001 * 109.46865 * 29.99917 * 11 10 8 35 35 H 1.08994 * 109.46989 * 149.99905 * 11 10 8 36 36 H 1.09002 * 109.47129 * 149.99989 * 12 10 8 37 37 H 1.08998 * 109.46845 * 30.00795 * 12 10 8 38 38 H 0.97006 * 119.99995 * 359.97438 * 16 15 13 39 39 H 1.09002 * 109.47103 * 60.00045 * 21 5 4 40 40 H 1.09008 * 109.47324 * 179.97438 * 21 5 4 41 41 H 1.08997 * 109.47072 * 180.02562 * 23 22 21 42 42 H 1.08996 * 109.47312 * 299.99873 * 23 22 21 43 43 H 1.09002 * 109.47167 * 59.99910 * 23 22 21 44 44 H 1.09002 * 109.47103 * 299.99971 * 24 22 21 45 45 H 1.09003 * 109.47340 * 60.00195 * 24 22 21 46 46 H 1.08997 * 109.47472 * 179.97438 * 24 22 21 47 47 H 1.08995 * 109.47643 * 180.02562 * 25 22 21 48 48 H 1.09002 * 109.46932 * 60.00161 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5699 -0.7219 -1.2490 6 1 3.9337 0.3057 -1.2488 7 6 4.0799 -1.4426 -2.4986 8 6 3.6817 -0.6634 -3.7255 9 8 3.0524 0.3671 -3.6117 10 7 4.0257 -1.1113 -4.9493 11 6 4.7864 -2.3559 -5.0867 12 6 3.6381 -0.3541 -6.1421 13 6 2.2915 -0.8296 -6.6232 14 1 1.7761 -1.6172 -6.0939 15 6 1.7175 -0.2590 -7.7395 16 7 2.3454 0.6998 -8.3845 17 14 0.0480 -0.8477 -8.3356 18 1 -0.9613 -0.6388 -7.2665 19 1 0.1230 -2.2927 -8.6698 20 1 -0.3454 -0.0795 -9.5440 21 6 4.0794 -1.4434 0.0003 22 6 3.5695 -0.7222 1.2495 23 6 4.0800 0.7202 1.2497 24 6 4.0796 -1.4434 2.4987 25 6 2.0395 -0.7216 1.2493 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.6767 -0.2074 -2.1392 30 1 1.6765 -1.7490 -1.2493 31 1 3.6449 -2.4409 -2.5451 32 1 5.1662 -1.5212 -2.4547 33 1 5.8532 -2.1335 -5.0682 34 1 4.5403 -3.0250 -4.2622 35 1 4.5314 -2.8349 -6.0320 36 1 4.3792 -0.5076 -6.9265 37 1 3.5828 0.7065 -5.8970 38 1 3.2122 1.0059 -8.0747 39 1 3.7158 -2.4710 0.0001 40 1 5.1695 -1.4442 0.0002 41 1 3.7171 1.2339 2.1399 42 1 5.1700 0.7198 1.2499 43 1 3.7170 1.2343 0.3597 44 1 3.7163 -2.4711 2.4987 45 1 5.1696 -1.4433 2.4987 46 1 3.7167 -0.9293 3.3887 47 1 1.6762 -0.2075 2.1390 48 1 1.6758 -1.7492 1.2491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066630781.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:00 Heat of formation + Delta-G solvation = -81.022819 kcal Electronic energy + Delta-G solvation = -23540.700355 eV Core-core repulsion = 20400.778737 eV Total energy + Delta-G solvation = -3139.921617 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.12602 -38.64480 -35.01125 -33.98415 -33.35458 -32.69968 -28.34719 -27.43150 -26.86944 -26.52352 -26.17035 -25.27109 -22.84536 -20.65404 -20.42245 -18.64133 -18.23713 -16.89514 -16.23032 -15.53702 -15.07795 -14.98534 -14.67191 -14.44322 -13.86379 -13.75246 -13.64352 -12.95428 -12.74583 -12.64357 -12.43463 -12.27219 -12.20427 -11.97682 -11.87849 -11.79124 -11.68806 -11.53089 -11.25767 -11.16959 -10.89234 -10.79142 -10.76023 -10.59641 -10.56029 -10.09292 -10.04792 -9.89277 -9.81649 -9.08150 -8.78835 -8.37046 -7.57333 -6.36732 -4.08527 3.41713 3.45296 3.48076 3.65122 3.93964 4.54780 4.60648 4.63796 4.71331 4.98794 5.10452 5.24067 5.27464 5.31171 5.38560 5.43827 5.51435 5.52896 5.57319 5.61320 5.69542 5.73036 5.75908 5.81120 5.84749 5.87407 5.89734 5.91770 5.95473 6.04909 6.05229 6.13617 6.16418 6.21058 6.33902 6.38224 6.44043 6.49490 6.74523 6.81989 6.85182 7.16067 7.45071 8.06572 8.34644 8.46085 8.79947 9.09267 9.61364 11.00456 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022033 B = 0.004259 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.538887 B = 6572.860744 C = 7286.688869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 H 0.071 0.929 4 C -0.114 4.114 5 C -0.070 4.070 6 H 0.079 0.921 7 C -0.135 4.135 8 C 0.504 3.496 9 O -0.538 6.538 10 N -0.602 5.602 11 C 0.085 3.915 12 C 0.235 3.765 13 C -0.605 4.605 14 H 0.050 0.950 15 C 0.019 3.981 16 N -0.910 5.910 17 Si 1.071 2.929 18 H -0.288 1.288 19 H -0.288 1.288 20 H -0.281 1.281 21 C -0.102 4.102 22 C -0.064 4.064 23 C -0.146 4.146 24 C -0.140 4.140 25 C -0.101 4.101 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.019 0.981 37 H 0.033 0.967 38 H 0.267 0.733 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.066 0.934 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.052 0.948 47 H 0.056 0.944 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.233 -6.246 19.584 20.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.090 0.910 4 C -0.152 4.152 5 C -0.089 4.089 6 H 0.097 0.903 7 C -0.176 4.176 8 C 0.291 3.709 9 O -0.416 6.416 10 N -0.334 5.334 11 C -0.059 4.059 12 C 0.115 3.885 13 C -0.643 4.643 14 H 0.069 0.931 15 C -0.185 4.185 16 N -0.546 5.546 17 Si 0.899 3.101 18 H -0.214 1.214 19 H -0.215 1.215 20 H -0.207 1.207 21 C -0.140 4.140 22 C -0.064 4.064 23 C -0.203 4.203 24 C -0.197 4.197 25 C -0.138 4.138 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.107 0.893 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.037 0.963 37 H 0.051 0.949 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.754 -5.464 18.442 19.430 hybrid contribution 1.265 -0.501 1.110 1.756 sum 4.019 -5.965 19.552 20.833 Atomic orbital electron populations 1.21813 0.95650 1.01457 1.01443 1.21144 0.95086 0.99967 0.94757 0.91046 1.21767 0.94420 1.00182 0.98790 1.20920 0.96269 0.99890 0.91793 0.90272 1.21764 1.01853 1.00173 0.93771 1.20416 0.80037 0.86070 0.84372 1.90620 1.39827 1.25038 1.86153 1.47992 1.54035 1.24053 1.07345 1.21616 0.94758 0.86897 1.02649 1.19307 0.95600 0.92431 0.81121 1.22245 1.04390 1.23169 1.14542 0.93138 1.25804 1.04382 0.94521 0.93782 1.70801 1.16122 1.26645 1.41061 0.83520 0.74719 0.75586 0.76302 1.21406 1.21474 1.20655 1.21655 0.99827 0.98922 0.93561 1.20502 0.95461 0.95619 0.94779 1.21991 1.00557 0.95740 1.02055 1.21861 1.00729 1.00042 0.97092 1.21656 0.94122 1.00432 0.97630 0.93050 0.93259 0.92420 0.89333 0.93056 0.89742 0.89938 0.93880 0.92283 0.90963 0.96312 0.94911 0.92250 0.92147 0.92273 0.93117 0.93019 0.91548 0.92869 0.92858 0.92928 0.92518 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.19 37.15 0.34 -1.43 16 2 C -0.09 -1.16 2.45 -90.62 -0.22 -1.38 16 3 H 0.07 0.96 6.43 -51.93 -0.33 0.63 16 4 C -0.11 -1.71 4.22 -26.73 -0.11 -1.83 16 5 C -0.07 -0.97 1.56 -90.62 -0.14 -1.11 16 6 H 0.08 1.23 6.24 -51.93 -0.32 0.90 16 7 C -0.14 -2.01 3.73 -27.88 -0.10 -2.11 16 8 C 0.50 10.47 7.39 -10.99 -0.08 10.39 16 9 O -0.54 -13.32 13.54 5.56 0.08 -13.24 16 10 N -0.60 -13.03 2.86 -182.95 -0.52 -13.55 16 11 C 0.09 1.38 10.24 59.85 0.61 1.99 16 12 C 0.24 6.24 4.47 -5.20 -0.02 6.22 16 13 C -0.60 -17.57 9.39 -34.44 -0.32 -17.90 16 14 H 0.05 1.48 7.81 -52.49 -0.41 1.07 16 15 C 0.02 0.56 5.46 -17.82 -0.10 0.47 16 16 N -0.91 -28.11 13.65 55.43 0.76 -27.35 16 17 Si 1.07 25.88 29.90 -169.99 -5.08 20.80 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 C -0.10 -1.11 4.01 -26.74 -0.11 -1.22 16 22 C -0.06 -0.64 0.77 -154.51 -0.12 -0.76 16 23 C -0.15 -1.51 7.78 37.16 0.29 -1.22 16 24 C -0.14 -1.19 8.47 37.16 0.31 -0.88 16 25 C -0.10 -1.07 4.01 -26.73 -0.11 -1.18 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 1.70 5.95 -51.93 -0.31 1.39 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.14 7.40 -51.93 -0.38 0.76 16 32 H 0.08 1.04 8.11 -51.93 -0.42 0.62 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.79 6.44 -51.93 -0.33 0.45 16 35 H 0.07 1.22 8.07 -51.93 -0.42 0.81 16 36 H 0.02 0.50 7.94 -51.93 -0.41 0.09 16 37 H 0.03 0.97 7.29 -51.93 -0.38 0.59 16 38 H 0.27 8.21 7.22 -40.82 -0.29 7.91 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.79 4.81 -51.93 -0.25 0.54 16 44 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 362.12 15.07 5.46 5.46 Total: -1.00 -32.80 362.12 -8.18 -40.99 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -8.99 Total: -1.17 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: 0.12 Total: -11.94 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.23 Total: -40.90 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.08 Total: -13.24 kcal Atomic # 14 Polarization: 25.88 SS G_CDS: -5.08 Total: 20.80 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.80 -8.18 -40.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066630781.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.037 kcal (2) G-P(sol) polarization free energy of solvation -32.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds