Wall clock time and date at job start Tue Mar 31 2020 05:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46870 * 2 1 4 4 C 1.52998 * 109.47150 * 119.99229 * 2 1 3 5 5 C 1.52996 * 109.47511 * 180.02562 * 4 2 1 6 6 H 1.08998 * 109.47229 * 59.99724 * 5 4 2 7 7 C 1.53000 * 109.47757 * 180.02562 * 5 4 2 8 8 C 1.50703 * 109.46653 * 294.99999 * 7 5 4 9 9 O 1.21279 * 120.00049 * 359.97438 * 8 7 5 10 10 N 1.34779 * 119.99541 * 179.97438 * 8 7 5 11 11 C 1.46499 * 120.00212 * 359.97438 * 10 8 7 12 12 C 1.46502 * 119.99726 * 179.97438 * 10 8 7 13 13 C 1.50691 * 109.47318 * 269.99867 * 12 10 8 14 14 H 1.08001 * 119.99896 * 0.02562 * 13 12 10 15 15 C 1.37874 * 120.00413 * 179.97438 * 13 12 10 16 16 N 1.31517 * 120.00255 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99824 * 0.02562 * 15 13 12 18 18 H 1.48507 * 109.47024 * 89.99663 * 17 15 13 19 19 H 1.48499 * 109.47038 * 209.99658 * 17 15 13 20 20 H 1.48504 * 109.47057 * 329.99923 * 17 15 13 21 21 C 1.53007 * 109.46859 * 300.00301 * 5 4 2 22 22 C 1.53001 * 109.47242 * 59.99956 * 21 5 4 23 23 C 1.53003 * 109.47224 * 59.99587 * 22 21 5 24 24 C 1.52993 * 109.47103 * 180.02562 * 22 21 5 25 25 C 1.52993 * 109.47419 * 239.99482 * 2 1 3 26 26 H 1.09001 * 109.46870 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47425 * 300.00543 * 1 2 3 28 28 H 1.09001 * 109.46865 * 60.00727 * 1 2 3 29 29 H 1.09002 * 109.47126 * 60.00561 * 4 2 1 30 30 H 1.09008 * 109.47338 * 300.00419 * 4 2 1 31 31 H 1.08996 * 109.47332 * 175.00237 * 7 5 4 32 32 H 1.08996 * 109.46646 * 54.99374 * 7 5 4 33 33 H 1.09002 * 109.47391 * 270.00122 * 11 10 8 34 34 H 1.09001 * 109.46813 * 150.00179 * 11 10 8 35 35 H 1.09004 * 109.47041 * 30.00306 * 11 10 8 36 36 H 1.09002 * 109.47278 * 30.00038 * 12 10 8 37 37 H 1.09006 * 109.46998 * 149.99560 * 12 10 8 38 38 H 0.96995 * 119.99737 * 180.02562 * 16 15 13 39 39 H 1.09004 * 109.46772 * 179.97438 * 21 5 4 40 40 H 1.08998 * 109.46729 * 299.99729 * 21 5 4 41 41 H 1.09005 * 109.46576 * 60.00363 * 23 22 21 42 42 H 1.09001 * 109.47059 * 179.97438 * 23 22 21 43 43 H 1.08994 * 109.47446 * 300.00210 * 23 22 21 44 44 H 1.09001 * 109.47523 * 59.99979 * 24 22 21 45 45 H 1.09001 * 109.47272 * 179.97438 * 24 22 21 46 46 H 1.08994 * 109.47351 * 299.99505 * 24 22 21 47 47 H 1.09001 * 109.47272 * 60.00041 * 25 2 1 48 48 H 1.09001 * 109.47523 * 300.00119 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5699 -0.7206 1.2497 6 1 3.9330 0.3072 1.2498 7 6 4.0800 -1.4422 2.4987 8 6 3.6808 -0.6645 3.7263 9 8 3.0508 0.3656 3.6133 10 7 4.0239 -1.1139 4.9498 11 6 4.7844 -2.3586 5.0863 12 6 3.6362 -0.3577 6.1431 13 6 4.7176 0.6358 6.4815 14 1 5.6047 0.6980 5.8687 15 6 4.5741 1.4661 7.5728 16 7 5.5177 2.3335 7.8678 17 14 3.0394 1.3590 8.6324 18 1 3.2583 0.3748 9.7227 19 1 2.7493 2.6918 9.2196 20 1 1.8905 0.9253 7.7973 21 6 4.0805 -1.4416 0.0005 22 6 3.5705 -0.7205 -1.2488 23 6 4.0800 0.7223 -1.2486 24 6 4.0805 -1.4418 -2.4979 25 6 2.0400 -0.7213 -1.2491 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.6767 -1.7488 1.2494 30 1 1.6766 -0.2072 2.1393 31 1 5.1663 -1.5199 2.4553 32 1 3.6457 -2.4408 2.5441 33 1 4.0947 -3.1984 5.1714 34 1 5.4069 -2.3078 5.9796 35 1 5.4173 -2.4956 4.2095 36 1 2.7034 0.1723 5.9504 37 1 3.4984 -1.0435 6.9791 38 1 5.4168 2.9173 8.6358 39 1 5.1705 -1.4408 0.0006 40 1 3.7175 -2.4694 0.0004 41 1 5.1700 0.7226 -1.2484 42 1 3.7171 1.2359 -2.1389 43 1 3.7163 1.2359 -0.3587 44 1 3.7172 -2.4695 -2.4979 45 1 3.7169 -0.9283 -3.3880 46 1 5.1705 -1.4418 -2.4980 47 1 1.6768 -0.2076 -2.1392 48 1 1.6768 -1.7490 -1.2491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066630784.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:08 Heat of formation + Delta-G solvation = -73.133311 kcal Electronic energy + Delta-G solvation = -23475.616040 eV Core-core repulsion = 20336.036538 eV Total energy + Delta-G solvation = -3139.579502 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.12683 -38.65512 -34.97475 -33.99374 -33.33111 -32.45311 -28.99435 -27.45142 -27.07039 -26.54859 -26.18960 -25.62791 -22.47880 -20.50247 -20.43541 -18.60140 -18.11963 -16.92830 -16.25202 -15.45136 -15.23964 -14.98609 -14.77570 -14.46146 -13.97797 -13.82804 -13.60826 -12.83053 -12.81894 -12.61181 -12.45890 -12.30724 -12.27796 -11.95955 -11.93091 -11.78868 -11.72132 -11.55844 -11.46675 -11.20831 -10.94474 -10.78950 -10.74381 -10.59854 -10.49816 -10.11634 -10.03842 -9.88056 -9.82561 -9.50129 -8.80570 -8.57528 -7.63373 -6.06991 -4.05380 3.28008 3.36288 3.40838 3.44217 3.92325 4.41423 4.61253 4.63880 4.71712 4.98442 5.09335 5.22398 5.27084 5.29467 5.30830 5.43144 5.51874 5.53055 5.59231 5.64649 5.71299 5.73254 5.76441 5.79647 5.85929 5.87704 5.88402 5.90852 5.94508 6.04577 6.07540 6.13859 6.15845 6.20055 6.34395 6.38426 6.43401 6.48198 6.70462 6.73514 6.76172 7.02082 7.39927 7.63983 8.32280 8.49921 8.95828 9.07248 9.53784 11.06540 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023672 B = 0.004042 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.563400 B = 6925.150802 C = 7234.493351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.073 0.927 4 C -0.112 4.112 5 C -0.072 4.072 6 H 0.082 0.918 7 C -0.135 4.135 8 C 0.506 3.494 9 O -0.537 6.537 10 N -0.601 5.601 11 C 0.084 3.916 12 C 0.215 3.785 13 C -0.527 4.527 14 H 0.073 0.927 15 C 0.072 3.928 16 N -0.899 5.899 17 Si 0.875 3.125 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.264 1.264 21 C -0.102 4.102 22 C -0.064 4.064 23 C -0.147 4.147 24 C -0.140 4.140 25 C -0.101 4.101 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.040 0.960 37 H 0.023 0.977 38 H 0.264 0.736 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.052 0.948 42 H 0.049 0.951 43 H 0.066 0.934 44 H 0.052 0.948 45 H 0.051 0.949 46 H 0.053 0.947 47 H 0.056 0.944 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.889 -10.887 -18.053 21.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.091 0.909 4 C -0.150 4.150 5 C -0.091 4.091 6 H 0.100 0.900 7 C -0.175 4.175 8 C 0.293 3.707 9 O -0.415 6.415 10 N -0.333 5.333 11 C -0.060 4.060 12 C 0.095 3.905 13 C -0.566 4.566 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.537 5.537 17 Si 0.702 3.298 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.188 1.188 21 C -0.140 4.140 22 C -0.064 4.064 23 C -0.204 4.204 24 C -0.197 4.197 25 C -0.138 4.138 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.041 0.959 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.075 0.925 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.176 -10.202 -17.957 21.291 hybrid contribution -0.492 -0.067 0.765 0.912 sum -5.668 -10.269 -17.192 20.812 Atomic orbital electron populations 1.21809 0.95755 1.01321 1.01402 1.21153 0.94947 1.00157 0.94828 0.90905 1.21751 0.94639 0.99932 0.98656 1.20938 0.96037 1.00231 0.91854 0.89993 1.21756 1.02235 0.99879 0.93643 1.20419 0.80147 0.85737 0.84354 1.90620 1.40549 1.24294 1.86048 1.47870 1.54309 1.23987 1.07176 1.21646 0.95623 0.85979 1.02777 1.19634 0.97413 0.91541 0.81962 1.21343 1.04822 1.18149 1.12260 0.90846 1.24863 0.96201 0.94767 0.97224 1.69899 1.33424 1.22276 1.28123 0.86859 0.84293 0.77810 0.80853 1.20139 1.20955 1.18847 1.21658 1.00009 0.98785 0.93519 1.20514 0.95341 0.95708 0.94805 1.21995 1.00737 0.95623 1.02059 1.21860 1.00821 0.99964 0.97087 1.21657 0.94240 1.00324 0.97579 0.93125 0.92566 0.93225 0.93143 0.89609 0.89562 0.89896 0.93816 0.90741 0.92135 0.94158 0.95892 0.92601 0.92144 0.92202 0.92896 0.93148 0.91480 0.92922 0.92952 0.92790 0.92532 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.19 37.16 0.34 -1.26 16 2 C -0.09 -1.10 2.45 -90.62 -0.22 -1.32 16 3 H 0.07 0.95 6.43 -51.93 -0.33 0.61 16 4 C -0.11 -1.55 4.23 -26.73 -0.11 -1.66 16 5 C -0.07 -0.98 1.56 -90.62 -0.14 -1.12 16 6 H 0.08 1.30 6.24 -51.93 -0.32 0.98 16 7 C -0.13 -1.94 3.73 -27.88 -0.10 -2.05 16 8 C 0.51 10.19 7.39 -10.98 -0.08 10.11 16 9 O -0.54 -12.88 13.55 5.56 0.08 -12.81 16 10 N -0.60 -12.48 2.86 -182.95 -0.52 -13.00 16 11 C 0.08 1.30 10.24 59.85 0.61 1.91 16 12 C 0.22 5.34 4.23 -5.20 -0.02 5.32 16 13 C -0.53 -15.35 9.94 -34.45 -0.34 -15.69 16 14 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 15 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 16 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 17 Si 0.87 21.77 27.47 -169.99 -4.67 17.10 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 21 C -0.10 -1.10 4.01 -26.73 -0.11 -1.21 16 22 C -0.06 -0.64 0.77 -154.48 -0.12 -0.75 16 23 C -0.15 -1.57 7.78 37.16 0.29 -1.28 16 24 C -0.14 -1.19 8.47 37.15 0.31 -0.88 16 25 C -0.10 -1.02 4.01 -26.71 -0.11 -1.13 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 1.48 5.95 -51.92 -0.31 1.17 16 31 H 0.09 1.13 7.40 -51.93 -0.38 0.75 16 32 H 0.08 1.01 8.11 -51.93 -0.42 0.59 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 35 H 0.06 0.78 6.44 -51.93 -0.33 0.44 16 36 H 0.04 1.08 6.48 -51.93 -0.34 0.74 16 37 H 0.02 0.54 7.50 -51.93 -0.39 0.15 16 38 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.82 4.81 -51.93 -0.25 0.57 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 359.84 15.07 5.42 5.42 Total: -1.00 -32.86 359.84 -7.83 -40.69 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -9.01 Total: -1.20 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: 0.10 Total: -8.99 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.25 Total: -40.22 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.08 Total: -12.81 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.86 -7.83 -40.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066630784.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.445 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds