Wall clock time and date at job start Tue Mar 31 2020 05:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46870 * 2 1 4 4 C 1.52998 * 109.47150 * 119.99229 * 2 1 3 5 5 C 1.52996 * 109.47511 * 180.02562 * 4 2 1 6 6 H 1.08998 * 109.47229 * 59.99724 * 5 4 2 7 7 C 1.53000 * 109.47757 * 180.02562 * 5 4 2 8 8 C 1.50703 * 109.46653 * 294.99999 * 7 5 4 9 9 O 1.21279 * 120.00049 * 359.97438 * 8 7 5 10 10 N 1.34779 * 119.99541 * 179.97438 * 8 7 5 11 11 C 1.46499 * 120.00212 * 359.97438 * 10 8 7 12 12 C 1.46502 * 119.99726 * 179.97438 * 10 8 7 13 13 C 1.50691 * 109.47318 * 269.99867 * 12 10 8 14 14 H 1.08001 * 119.99896 * 0.02562 * 13 12 10 15 15 C 1.37874 * 120.00413 * 179.97438 * 13 12 10 16 16 N 1.31517 * 120.00255 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99824 * 0.02562 * 15 13 12 18 18 H 1.48507 * 109.47024 * 89.99663 * 17 15 13 19 19 H 1.48499 * 109.47038 * 209.99658 * 17 15 13 20 20 H 1.48504 * 109.47057 * 329.99923 * 17 15 13 21 21 C 1.53007 * 109.46859 * 300.00301 * 5 4 2 22 22 C 1.53001 * 109.47242 * 59.99956 * 21 5 4 23 23 C 1.53003 * 109.47224 * 59.99587 * 22 21 5 24 24 C 1.52993 * 109.47103 * 180.02562 * 22 21 5 25 25 C 1.52993 * 109.47419 * 239.99482 * 2 1 3 26 26 H 1.09001 * 109.46870 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47425 * 300.00543 * 1 2 3 28 28 H 1.09001 * 109.46865 * 60.00727 * 1 2 3 29 29 H 1.09002 * 109.47126 * 60.00561 * 4 2 1 30 30 H 1.09008 * 109.47338 * 300.00419 * 4 2 1 31 31 H 1.08996 * 109.47332 * 175.00237 * 7 5 4 32 32 H 1.08996 * 109.46646 * 54.99374 * 7 5 4 33 33 H 1.09002 * 109.47391 * 270.00122 * 11 10 8 34 34 H 1.09001 * 109.46813 * 150.00179 * 11 10 8 35 35 H 1.09004 * 109.47041 * 30.00306 * 11 10 8 36 36 H 1.09002 * 109.47278 * 30.00038 * 12 10 8 37 37 H 1.09006 * 109.46998 * 149.99560 * 12 10 8 38 38 H 0.96995 * 119.99737 * 180.02562 * 16 15 13 39 39 H 1.09004 * 109.46772 * 179.97438 * 21 5 4 40 40 H 1.08998 * 109.46729 * 299.99729 * 21 5 4 41 41 H 1.09005 * 109.46576 * 60.00363 * 23 22 21 42 42 H 1.09001 * 109.47059 * 179.97438 * 23 22 21 43 43 H 1.08994 * 109.47446 * 300.00210 * 23 22 21 44 44 H 1.09001 * 109.47523 * 59.99979 * 24 22 21 45 45 H 1.09001 * 109.47272 * 179.97438 * 24 22 21 46 46 H 1.08994 * 109.47351 * 299.99505 * 24 22 21 47 47 H 1.09001 * 109.47272 * 60.00041 * 25 2 1 48 48 H 1.09001 * 109.47523 * 300.00119 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5699 -0.7206 1.2497 6 1 3.9330 0.3072 1.2498 7 6 4.0800 -1.4422 2.4987 8 6 3.6808 -0.6645 3.7263 9 8 3.0508 0.3656 3.6133 10 7 4.0239 -1.1139 4.9498 11 6 4.7844 -2.3586 5.0863 12 6 3.6362 -0.3577 6.1431 13 6 4.7176 0.6358 6.4815 14 1 5.6047 0.6980 5.8687 15 6 4.5741 1.4661 7.5728 16 7 5.5177 2.3335 7.8678 17 14 3.0394 1.3590 8.6324 18 1 3.2583 0.3748 9.7227 19 1 2.7493 2.6918 9.2196 20 1 1.8905 0.9253 7.7973 21 6 4.0805 -1.4416 0.0005 22 6 3.5705 -0.7205 -1.2488 23 6 4.0800 0.7223 -1.2486 24 6 4.0805 -1.4418 -2.4979 25 6 2.0400 -0.7213 -1.2491 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.6767 -1.7488 1.2494 30 1 1.6766 -0.2072 2.1393 31 1 5.1663 -1.5199 2.4553 32 1 3.6457 -2.4408 2.5441 33 1 4.0947 -3.1984 5.1714 34 1 5.4069 -2.3078 5.9796 35 1 5.4173 -2.4956 4.2095 36 1 2.7034 0.1723 5.9504 37 1 3.4984 -1.0435 6.9791 38 1 5.4168 2.9173 8.6358 39 1 5.1705 -1.4408 0.0006 40 1 3.7175 -2.4694 0.0004 41 1 5.1700 0.7226 -1.2484 42 1 3.7171 1.2359 -2.1389 43 1 3.7163 1.2359 -0.3587 44 1 3.7172 -2.4695 -2.4979 45 1 3.7169 -0.9283 -3.3880 46 1 5.1705 -1.4418 -2.4980 47 1 1.6768 -0.2076 -2.1392 48 1 1.6768 -1.7490 -1.2491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066630784.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:08 Heat of formation + Delta-G solvation = -92.466927 kcal Electronic energy + Delta-G solvation = -23476.454409 eV Core-core repulsion = 20336.036538 eV Total energy + Delta-G solvation = -3140.417871 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.27544 -40.01163 -36.64279 -34.95639 -34.76342 -34.29113 -30.82010 -28.45347 -28.12987 -27.42742 -27.16873 -27.05257 -24.35256 -21.72005 -21.37295 -19.85264 -19.28584 -19.14883 -17.72166 -17.06244 -16.60271 -16.15887 -15.93984 -15.72707 -15.30622 -14.96930 -14.67031 -14.53738 -14.04027 -13.92116 -13.70245 -13.58866 -13.39057 -13.28909 -13.13660 -12.96062 -12.80563 -12.61330 -12.55102 -12.47866 -12.35100 -12.22994 -12.01663 -11.78448 -11.74798 -11.63165 -11.53672 -11.03619 -10.91364 -10.83732 -10.75260 -10.34143 -9.33264 -8.35758 -6.40682 1.29724 1.34605 1.45527 1.89064 2.29711 2.41448 2.98438 3.69529 3.71280 3.76275 3.96140 4.11714 4.25990 4.29405 4.38499 4.42746 4.47515 4.60196 4.65854 4.68649 4.75691 4.78915 4.80605 4.81471 4.86836 4.90746 4.94282 4.98654 5.00437 5.04002 5.06373 5.11913 5.17845 5.21152 5.25811 5.30561 5.43079 5.45132 5.46392 5.56396 5.60615 5.64340 5.70217 5.75519 6.23772 6.60504 6.76884 7.21041 7.51088 8.81456 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023672 B = 0.004042 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.563400 B = 6925.150802 C = 7234.493351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.051 0.949 4 C -0.108 4.108 5 C -0.070 4.070 6 H 0.047 0.953 7 C -0.123 4.123 8 C 0.493 3.507 9 O -0.588 6.588 10 N -0.613 5.613 11 C 0.077 3.923 12 C 0.224 3.776 13 C -0.536 4.536 14 H 0.026 0.974 15 C 0.010 3.990 16 N -0.946 5.946 17 Si 0.949 3.051 18 H -0.250 1.250 19 H -0.281 1.281 20 H -0.258 1.258 21 C -0.095 4.095 22 C -0.063 4.063 23 C -0.147 4.147 24 C -0.135 4.135 25 C -0.094 4.094 26 H 0.062 0.938 27 H 0.037 0.963 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.042 0.958 31 H 0.104 0.896 32 H 0.118 0.882 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.017 0.983 37 H 0.046 0.954 38 H 0.268 0.732 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.041 0.959 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.056 0.944 47 H 0.066 0.934 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.809 -14.001 -19.392 24.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 H 0.069 0.931 4 C -0.146 4.146 5 C -0.089 4.089 6 H 0.066 0.934 7 C -0.162 4.162 8 C 0.283 3.717 9 O -0.469 6.469 10 N -0.345 5.345 11 C -0.065 4.065 12 C 0.101 3.899 13 C -0.575 4.575 14 H 0.045 0.955 15 C -0.188 4.188 16 N -0.586 5.586 17 Si 0.772 3.228 18 H -0.174 1.174 19 H -0.207 1.207 20 H -0.182 1.182 21 C -0.132 4.132 22 C -0.063 4.063 23 C -0.204 4.204 24 C -0.192 4.192 25 C -0.131 4.131 26 H 0.081 0.919 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.122 0.878 32 H 0.136 0.864 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.035 0.965 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.084 0.916 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.070 -13.367 -19.310 24.256 hybrid contribution -0.129 0.965 1.150 1.507 sum -6.199 -12.401 -18.160 22.847 Atomic orbital electron populations 1.21789 0.95037 1.02038 1.01181 1.21121 0.95588 0.99108 0.95244 0.93088 1.21654 0.94868 1.00341 0.97690 1.20900 0.95895 0.98844 0.93229 0.93419 1.21795 1.03421 1.00419 0.90566 1.21537 0.79031 0.85532 0.85636 1.90601 1.42718 1.26752 1.86858 1.48030 1.54904 1.25293 1.06229 1.21955 0.96272 0.84501 1.03741 1.19276 0.94720 0.91396 0.84496 1.21579 1.04504 1.19703 1.11700 0.95524 1.25872 0.99929 0.94113 0.98861 1.70055 1.35932 1.23473 1.29183 0.85690 0.79469 0.78495 0.79167 1.17373 1.20684 1.18170 1.21618 1.00401 0.99291 0.91921 1.20528 0.95279 0.95044 0.95475 1.21987 1.00748 0.96477 1.01207 1.21806 1.01020 1.00339 0.96067 1.21614 0.94256 1.00759 0.96509 0.91872 0.94424 0.91848 0.91517 0.93881 0.87772 0.86402 0.90288 0.91896 0.89165 0.96463 0.93632 0.92262 0.91468 0.90194 0.92844 0.92312 0.94039 0.91763 0.92364 0.92492 0.91579 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.19 71.98 0.66 -2.40 16 2 C -0.09 -2.18 2.45 -10.80 -0.03 -2.20 16 3 H 0.05 1.41 6.43 -2.39 -0.02 1.40 16 4 C -0.11 -2.97 4.23 30.59 0.13 -2.84 16 5 C -0.07 -1.86 1.56 -10.79 -0.02 -1.88 16 6 H 0.05 1.60 6.24 -2.39 -0.01 1.58 16 7 C -0.12 -3.31 3.73 29.85 0.11 -3.20 16 8 C 0.49 20.08 7.39 87.66 0.65 20.73 16 9 O -0.59 -29.77 13.55 -3.02 -0.04 -29.82 16 10 N -0.61 -25.30 2.86 -851.12 -2.43 -27.73 16 11 C 0.08 2.21 10.24 127.77 1.31 3.52 16 12 C 0.22 11.22 4.23 85.63 0.36 11.58 16 13 C -0.54 -32.40 9.94 25.60 0.25 -32.15 16 14 H 0.03 1.80 8.06 -2.91 -0.02 1.77 16 15 C 0.01 0.61 5.47 84.65 0.46 1.07 16 16 N -0.95 -60.91 13.96 21.45 0.30 -60.61 16 17 Si 0.95 45.40 27.47 68.60 1.88 47.28 16 18 H -0.25 -10.87 7.11 99.48 0.71 -10.16 16 19 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 20 H -0.26 -11.97 6.54 99.48 0.65 -11.32 16 21 C -0.09 -1.79 4.01 30.60 0.12 -1.66 16 22 C -0.06 -1.12 0.77 -52.17 -0.04 -1.16 16 23 C -0.15 -3.07 7.78 71.98 0.56 -2.51 16 24 C -0.14 -1.83 8.47 71.98 0.61 -1.22 16 25 C -0.09 -1.68 4.01 30.61 0.12 -1.56 16 26 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.04 1.56 5.95 -2.38 -0.01 1.55 16 31 H 0.10 2.47 7.40 -2.39 -0.02 2.45 16 32 H 0.12 2.40 8.11 -2.39 -0.02 2.38 16 33 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.06 1.94 8.07 -2.39 -0.02 1.92 16 35 H 0.09 2.02 6.44 -2.38 -0.02 2.01 16 36 H 0.02 0.94 6.48 -2.39 -0.02 0.93 16 37 H 0.05 2.07 7.50 -2.38 -0.02 2.06 16 38 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 39 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 41 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.04 1.07 4.81 -2.39 -0.01 1.06 16 44 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 46 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -76.89 359.84 5.82 -71.07 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.84 Total: 15.68 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: 5.27 Total: -15.88 kcal Atomic # 7 Polarization: -86.21 SS G_CDS: -2.13 Total: -88.34 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -0.04 Total: -29.82 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.28 kcal Total: -76.89 5.82 -71.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066630784.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.397 kcal (2) G-P(sol) polarization free energy of solvation -76.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds