Wall clock time and date at job start Tue Mar 31 2020 05:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47011 * 2 1 4 4 C 1.50707 * 109.47026 * 119.99911 * 2 1 3 5 5 H 1.07996 * 119.99555 * 25.55919 * 4 2 1 6 6 C 1.37873 * 120.00085 * 205.56156 * 4 2 1 7 7 N 1.31522 * 119.99715 * 353.29058 * 6 4 2 8 8 Si 1.86799 * 120.00343 * 173.29550 * 6 4 2 9 9 H 1.48501 * 109.46929 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47054 * 239.99992 * 8 6 4 11 11 H 1.48494 * 109.47214 * 119.99504 * 8 6 4 12 12 N 1.46499 * 109.47447 * 239.99726 * 2 1 3 13 13 C 1.34775 * 119.99655 * 84.99847 * 12 2 1 14 14 O 1.21281 * 120.00326 * 359.97438 * 13 12 2 15 15 C 1.50699 * 119.99999 * 180.02562 * 13 12 2 16 16 C 1.53000 * 109.47594 * 180.02562 * 15 13 12 17 17 H 1.09002 * 109.46678 * 305.00122 * 16 15 13 18 18 C 1.52999 * 109.47215 * 64.99656 * 16 15 13 19 19 C 1.52999 * 109.47489 * 180.02562 * 18 16 15 20 20 H 1.08993 * 109.46866 * 59.99922 * 19 18 16 21 21 C 1.52998 * 109.47331 * 180.02562 * 19 18 16 22 22 C 1.53004 * 109.46692 * 300.00172 * 19 18 16 23 23 C 1.52998 * 109.47080 * 60.00033 * 22 19 18 24 24 C 1.53001 * 109.46773 * 179.97438 * 23 22 19 25 25 C 1.53001 * 109.47093 * 59.99893 * 23 22 19 26 26 C 1.52999 * 109.47463 * 185.00187 * 16 15 13 27 27 H 1.09008 * 109.47181 * 175.76720 * 1 2 3 28 28 H 1.08992 * 109.47488 * 295.76263 * 1 2 3 29 29 H 1.08991 * 109.47182 * 55.77098 * 1 2 3 30 30 H 0.96993 * 119.99981 * 354.61238 * 7 6 4 31 31 H 0.96999 * 120.00343 * 265.00059 * 12 2 1 32 32 H 1.09006 * 109.47241 * 300.00259 * 15 13 12 33 33 H 1.09005 * 109.47139 * 60.00162 * 15 13 12 34 34 H 1.09001 * 109.46887 * 300.00660 * 18 16 15 35 35 H 1.09002 * 109.46783 * 59.99837 * 18 16 15 36 36 H 1.08994 * 109.47143 * 180.02562 * 21 19 18 37 37 H 1.09001 * 109.46673 * 299.99953 * 21 19 18 38 38 H 1.09002 * 109.47155 * 59.99226 * 21 19 18 39 39 H 1.09002 * 109.47407 * 299.99679 * 22 19 18 40 40 H 1.09001 * 109.46621 * 180.02562 * 22 19 18 41 41 H 1.09003 * 109.47287 * 179.97438 * 24 23 22 42 42 H 1.08990 * 109.47544 * 300.00113 * 24 23 22 43 43 H 1.08999 * 109.47140 * 60.00488 * 24 23 22 44 44 H 1.09001 * 109.47140 * 299.99443 * 25 23 22 45 45 H 1.08995 * 109.47173 * 60.00431 * 25 23 22 46 46 H 1.09003 * 109.47008 * 179.97438 * 25 23 22 47 47 H 1.09005 * 109.46619 * 299.99645 * 26 16 15 48 48 H 1.08997 * 109.47000 * 59.99614 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 1.4168 -1.4550 1.7132 6 6 3.2777 -0.4097 1.7401 7 7 4.0803 0.3975 1.0813 8 14 3.8250 -1.1488 3.3659 9 1 2.7464 -2.0167 3.9032 10 1 4.1112 -0.0594 4.3336 11 1 5.0522 -1.9576 3.1538 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8582 1.1583 -2.4117 15 6 2.6490 -0.7288 -3.5876 16 6 2.7012 0.2544 -4.7587 17 1 1.7216 0.7139 -4.8912 18 6 3.7386 1.3404 -4.4670 19 6 3.7904 2.3240 -5.6378 20 1 2.8109 2.7834 -5.7699 21 6 4.8283 3.4097 -5.3463 22 6 4.1797 1.5766 -6.9148 23 6 3.1422 0.4907 -7.2066 24 6 3.5312 -0.2562 -8.4839 25 6 1.7672 1.1356 -7.3921 26 6 3.0907 -0.4933 -6.0355 27 1 -0.3634 -1.0249 -0.0759 28 1 -0.3634 0.4466 0.9254 29 1 -0.3633 0.5780 -0.8496 30 1 3.8293 0.7191 0.2014 31 1 2.2491 -1.6318 -1.1525 32 1 3.6481 -1.1214 -3.3985 33 1 1.9761 -1.5507 -3.8325 34 1 3.4610 1.8731 -3.5574 35 1 4.7181 0.8809 -4.3344 36 1 4.8648 4.1106 -6.1802 37 1 4.5513 3.9421 -4.4364 38 1 5.8078 2.9499 -5.2143 39 1 5.1593 1.1172 -6.7827 40 1 4.2170 2.2775 -7.7488 41 1 2.7923 -1.0303 -8.6916 42 1 3.5678 0.4446 -9.3178 43 1 4.5108 -0.7157 -8.3522 44 1 1.4898 1.6680 -6.4823 45 1 1.8041 1.8362 -8.2262 46 1 1.0281 0.3620 -7.6004 47 1 4.0702 -0.9527 -5.9029 48 1 2.3515 -1.2669 -6.2433 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066642313.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:21 Heat of formation + Delta-G solvation = -97.127362 kcal Electronic energy + Delta-G solvation = -23517.033805 eV Core-core repulsion = 20376.413842 eV Total energy + Delta-G solvation = -3140.619963 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.02424 -38.44862 -35.01600 -33.92815 -33.14632 -32.05766 -29.65888 -27.45141 -26.99680 -26.43960 -26.09766 -24.67230 -21.74634 -20.38616 -20.31017 -19.15064 -18.44440 -17.27167 -16.00427 -15.22701 -14.97473 -14.77868 -14.63788 -14.13743 -13.85785 -13.69019 -13.58605 -13.26662 -12.76855 -12.70130 -12.40622 -12.27527 -11.99456 -11.80330 -11.76665 -11.66164 -11.47262 -11.18019 -11.13625 -10.99196 -10.83393 -10.76205 -10.71635 -10.54353 -10.21155 -10.07567 -9.98829 -9.82393 -9.75086 -8.97692 -8.64495 -8.53694 -7.73061 -6.51886 -4.32786 3.36857 3.38551 3.53579 3.60432 4.25661 4.42427 4.65132 4.71443 4.77812 5.04651 5.20495 5.29563 5.33055 5.36553 5.50685 5.52242 5.57856 5.59917 5.67242 5.76865 5.79280 5.83854 5.91099 5.92800 5.92927 5.98349 6.05685 6.09026 6.10901 6.18558 6.24257 6.37880 6.38277 6.43445 6.49341 6.54302 6.57192 6.64313 6.80526 6.87358 7.08832 7.29365 7.73841 7.96689 8.30411 8.64321 8.87075 9.32563 9.47791 10.85337 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024624 B = 0.003955 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.822593 B = 7078.011087 C = 7405.359784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.237 3.763 3 H 0.051 0.949 4 C -0.609 4.609 5 H 0.055 0.945 6 C 0.030 3.970 7 N -0.892 5.892 8 Si 1.073 2.927 9 H -0.287 1.287 10 H -0.284 1.284 11 H -0.287 1.287 12 N -0.708 5.708 13 C 0.496 3.504 14 O -0.563 6.563 15 C -0.142 4.142 16 C -0.067 4.067 17 H 0.077 0.923 18 C -0.113 4.113 19 C -0.091 4.091 20 H 0.070 0.930 21 C -0.146 4.146 22 C -0.101 4.101 23 C -0.064 4.064 24 C -0.140 4.140 25 C -0.146 4.146 26 C -0.103 4.103 27 H 0.037 0.963 28 H 0.051 0.949 29 H 0.031 0.969 30 H 0.278 0.722 31 H 0.385 0.615 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.065 0.935 45 H 0.049 0.951 46 H 0.050 0.950 47 H 0.060 0.940 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.215 -1.627 -16.457 16.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.137 3.863 3 H 0.069 0.931 4 C -0.648 4.648 5 H 0.074 0.926 6 C -0.179 4.179 7 N -0.525 5.525 8 Si 0.901 3.099 9 H -0.213 1.213 10 H -0.210 1.210 11 H -0.214 1.214 12 N -0.357 5.357 13 C 0.282 3.718 14 O -0.443 6.443 15 C -0.182 4.182 16 C -0.086 4.086 17 H 0.096 0.904 18 C -0.150 4.150 19 C -0.109 4.109 20 H 0.088 0.912 21 C -0.203 4.203 22 C -0.139 4.139 23 C -0.064 4.064 24 C -0.197 4.197 25 C -0.203 4.203 26 C -0.141 4.141 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.218 0.782 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.079 0.921 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.789 -0.766 -15.351 15.390 hybrid contribution -1.055 -0.637 -1.121 1.666 sum -0.266 -1.404 -16.472 16.534 Atomic orbital electron populations 1.21996 0.98723 0.99487 0.99622 1.18862 0.89833 0.94978 0.82639 0.93082 1.22185 1.04565 1.26711 1.11322 0.92621 1.25996 0.93173 0.94863 1.03827 1.70669 1.38163 1.29073 1.14602 0.83498 0.75524 0.76087 0.74787 1.21321 1.21035 1.21355 1.47638 1.64471 1.13560 1.10003 1.20667 0.78343 0.87715 0.85105 1.90565 1.52051 1.16221 1.85496 1.21800 1.02479 0.99332 0.94592 1.20881 1.00433 0.95106 0.92205 0.90423 1.21752 0.97925 0.96318 0.99043 1.21141 0.99157 0.95761 0.94849 0.91152 1.21812 0.99000 0.98326 1.01206 1.21656 0.98106 0.96816 0.97284 1.20513 0.95655 0.95451 0.94754 1.21861 1.01099 0.99882 0.96888 1.21983 0.95999 1.00386 1.01895 1.21676 1.01284 0.97157 0.93947 0.94383 0.93002 0.94993 0.91011 0.78183 0.89847 0.90106 0.89451 0.93020 0.93307 0.92519 0.92987 0.92247 0.92577 0.92871 0.92963 0.92860 0.91577 0.93176 0.93047 0.92131 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 9.46 37.16 0.35 -2.76 16 2 C 0.24 5.96 2.04 -69.08 -0.14 5.82 16 3 H 0.05 1.48 6.58 -51.93 -0.34 1.14 16 4 C -0.61 -16.27 8.50 -34.44 -0.29 -16.56 16 5 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 6 C 0.03 0.82 5.45 -17.82 -0.10 0.73 16 7 N -0.89 -26.22 13.56 55.43 0.75 -25.47 16 8 Si 1.07 24.09 29.91 -169.99 -5.08 19.01 16 9 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.71 -15.57 5.01 -54.93 -0.28 -15.85 16 13 C 0.50 10.30 7.51 -10.99 -0.08 10.21 16 14 O -0.56 -13.40 13.63 5.56 0.08 -13.32 16 15 C -0.14 -2.22 5.17 -27.88 -0.14 -2.37 16 16 C -0.07 -0.98 1.56 -90.62 -0.14 -1.12 16 17 H 0.08 1.23 6.24 -51.93 -0.32 0.91 16 18 C -0.11 -1.75 4.22 -26.73 -0.11 -1.87 16 19 C -0.09 -1.18 2.45 -90.62 -0.22 -1.40 16 20 H 0.07 0.96 6.43 -51.93 -0.33 0.62 16 21 C -0.15 -1.81 9.19 37.16 0.34 -1.47 16 22 C -0.10 -1.12 4.01 -26.73 -0.11 -1.23 16 23 C -0.06 -0.68 0.77 -154.49 -0.12 -0.79 16 24 C -0.14 -1.27 8.47 37.16 0.31 -0.95 16 25 C -0.15 -1.55 7.78 37.16 0.29 -1.26 16 26 C -0.10 -1.20 4.02 -26.71 -0.11 -1.31 16 27 H 0.04 0.78 8.14 -51.92 -0.42 0.36 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.28 8.38 6.93 -40.82 -0.28 8.10 16 31 H 0.39 7.82 8.59 -40.82 -0.35 7.47 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.09 1.69 5.95 -51.93 -0.31 1.38 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.80 4.81 -51.93 -0.25 0.55 16 45 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 48 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 363.94 15.07 5.48 5.48 Total: -1.00 -29.53 363.94 -8.33 -37.85 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -9.01 Total: 8.63 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -0.27 Total: -16.34 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.48 Total: -41.32 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.08 Total: -13.32 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -5.08 Total: 19.01 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.53 -8.33 -37.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066642313.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.273 kcal (2) G-P(sol) polarization free energy of solvation -29.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds