Wall clock time and date at job start Tue Mar 31 2020 05:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47011 * 2 1 4 4 C 1.50707 * 109.47026 * 119.99911 * 2 1 3 5 5 H 1.07996 * 119.99555 * 25.55919 * 4 2 1 6 6 C 1.37873 * 120.00085 * 205.56156 * 4 2 1 7 7 N 1.31522 * 119.99715 * 353.29058 * 6 4 2 8 8 Si 1.86799 * 120.00343 * 173.29550 * 6 4 2 9 9 H 1.48501 * 109.46929 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47054 * 239.99992 * 8 6 4 11 11 H 1.48494 * 109.47214 * 119.99504 * 8 6 4 12 12 N 1.46499 * 109.47447 * 239.99726 * 2 1 3 13 13 C 1.34775 * 119.99655 * 84.99847 * 12 2 1 14 14 O 1.21281 * 120.00326 * 359.97438 * 13 12 2 15 15 C 1.50699 * 119.99999 * 180.02562 * 13 12 2 16 16 C 1.53000 * 109.47594 * 180.02562 * 15 13 12 17 17 H 1.09002 * 109.46678 * 305.00122 * 16 15 13 18 18 C 1.52999 * 109.47215 * 64.99656 * 16 15 13 19 19 C 1.52999 * 109.47489 * 180.02562 * 18 16 15 20 20 H 1.08993 * 109.46866 * 59.99922 * 19 18 16 21 21 C 1.52998 * 109.47331 * 180.02562 * 19 18 16 22 22 C 1.53004 * 109.46692 * 300.00172 * 19 18 16 23 23 C 1.52998 * 109.47080 * 60.00033 * 22 19 18 24 24 C 1.53001 * 109.46773 * 179.97438 * 23 22 19 25 25 C 1.53001 * 109.47093 * 59.99893 * 23 22 19 26 26 C 1.52999 * 109.47463 * 185.00187 * 16 15 13 27 27 H 1.09008 * 109.47181 * 175.76720 * 1 2 3 28 28 H 1.08992 * 109.47488 * 295.76263 * 1 2 3 29 29 H 1.08991 * 109.47182 * 55.77098 * 1 2 3 30 30 H 0.96993 * 119.99981 * 354.61238 * 7 6 4 31 31 H 0.96999 * 120.00343 * 265.00059 * 12 2 1 32 32 H 1.09006 * 109.47241 * 300.00259 * 15 13 12 33 33 H 1.09005 * 109.47139 * 60.00162 * 15 13 12 34 34 H 1.09001 * 109.46887 * 300.00660 * 18 16 15 35 35 H 1.09002 * 109.46783 * 59.99837 * 18 16 15 36 36 H 1.08994 * 109.47143 * 180.02562 * 21 19 18 37 37 H 1.09001 * 109.46673 * 299.99953 * 21 19 18 38 38 H 1.09002 * 109.47155 * 59.99226 * 21 19 18 39 39 H 1.09002 * 109.47407 * 299.99679 * 22 19 18 40 40 H 1.09001 * 109.46621 * 180.02562 * 22 19 18 41 41 H 1.09003 * 109.47287 * 179.97438 * 24 23 22 42 42 H 1.08990 * 109.47544 * 300.00113 * 24 23 22 43 43 H 1.08999 * 109.47140 * 60.00488 * 24 23 22 44 44 H 1.09001 * 109.47140 * 299.99443 * 25 23 22 45 45 H 1.08995 * 109.47173 * 60.00431 * 25 23 22 46 46 H 1.09003 * 109.47008 * 179.97438 * 25 23 22 47 47 H 1.09005 * 109.46619 * 299.99645 * 26 16 15 48 48 H 1.08997 * 109.47000 * 59.99614 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 1.4168 -1.4550 1.7132 6 6 3.2777 -0.4097 1.7401 7 7 4.0803 0.3975 1.0813 8 14 3.8250 -1.1488 3.3659 9 1 2.7464 -2.0167 3.9032 10 1 4.1112 -0.0594 4.3336 11 1 5.0522 -1.9576 3.1538 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8582 1.1583 -2.4117 15 6 2.6490 -0.7288 -3.5876 16 6 2.7012 0.2544 -4.7587 17 1 1.7216 0.7139 -4.8912 18 6 3.7386 1.3404 -4.4670 19 6 3.7904 2.3240 -5.6378 20 1 2.8109 2.7834 -5.7699 21 6 4.8283 3.4097 -5.3463 22 6 4.1797 1.5766 -6.9148 23 6 3.1422 0.4907 -7.2066 24 6 3.5312 -0.2562 -8.4839 25 6 1.7672 1.1356 -7.3921 26 6 3.0907 -0.4933 -6.0355 27 1 -0.3634 -1.0249 -0.0759 28 1 -0.3634 0.4466 0.9254 29 1 -0.3633 0.5780 -0.8496 30 1 3.8293 0.7191 0.2014 31 1 2.2491 -1.6318 -1.1525 32 1 3.6481 -1.1214 -3.3985 33 1 1.9761 -1.5507 -3.8325 34 1 3.4610 1.8731 -3.5574 35 1 4.7181 0.8809 -4.3344 36 1 4.8648 4.1106 -6.1802 37 1 4.5513 3.9421 -4.4364 38 1 5.8078 2.9499 -5.2143 39 1 5.1593 1.1172 -6.7827 40 1 4.2170 2.2775 -7.7488 41 1 2.7923 -1.0303 -8.6916 42 1 3.5678 0.4446 -9.3178 43 1 4.5108 -0.7157 -8.3522 44 1 1.4898 1.6680 -6.4823 45 1 1.8041 1.8362 -8.2262 46 1 1.0281 0.3620 -7.6004 47 1 4.0702 -0.9527 -5.9029 48 1 2.3515 -1.2669 -6.2433 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066642313.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:20 Heat of formation + Delta-G solvation = -113.315457 kcal Electronic energy + Delta-G solvation = -23517.735773 eV Core-core repulsion = 20376.413842 eV Total energy + Delta-G solvation = -3141.321931 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.24252 -39.98356 -36.89899 -34.96206 -34.40451 -34.04235 -31.48094 -28.40519 -28.10422 -27.42053 -27.12990 -26.75079 -23.47342 -21.80937 -21.42025 -20.80493 -19.50261 -19.13661 -17.67060 -16.55983 -16.46652 -16.00850 -15.79919 -15.64698 -15.51539 -15.14548 -14.91545 -14.62593 -14.21281 -13.81371 -13.72930 -13.41704 -13.21492 -13.11129 -12.94582 -12.91897 -12.68830 -12.60475 -12.59857 -12.48603 -12.30536 -12.01404 -11.88544 -11.80144 -11.66853 -11.58433 -11.12033 -11.01213 -10.85503 -10.75835 -10.72297 -10.33713 -9.60682 -8.70517 -6.52051 1.55334 1.61608 1.80079 1.92281 2.52155 2.62026 3.26879 3.67616 3.71495 3.79255 4.04047 4.08878 4.23747 4.28897 4.37873 4.43698 4.47105 4.54687 4.64556 4.70759 4.72168 4.73695 4.75811 4.80234 4.82113 4.86841 4.93482 4.99460 5.02550 5.07913 5.15153 5.15729 5.20674 5.22350 5.27039 5.28000 5.39181 5.43762 5.52431 5.56329 5.63498 5.70897 5.76528 6.03477 6.13407 6.44558 7.05363 7.37414 7.61480 8.65283 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024624 B = 0.003955 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.822593 B = 7078.011087 C = 7405.359784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.238 3.762 3 H 0.002 0.998 4 C -0.614 4.614 5 H 0.061 0.939 6 C -0.018 4.018 7 N -0.922 5.922 8 Si 1.123 2.877 9 H -0.265 1.265 10 H -0.284 1.284 11 H -0.279 1.279 12 N -0.709 5.709 13 C 0.489 3.511 14 O -0.598 6.598 15 C -0.131 4.131 16 C -0.062 4.062 17 H 0.061 0.939 18 C -0.110 4.110 19 C -0.088 4.088 20 H 0.060 0.940 21 C -0.145 4.145 22 C -0.096 4.096 23 C -0.063 4.063 24 C -0.135 4.135 25 C -0.144 4.144 26 C -0.097 4.097 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.028 0.972 30 H 0.259 0.741 31 H 0.396 0.604 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.039 0.961 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.035 0.965 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.044 0.956 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.067 0.933 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.120 -3.704 -18.024 18.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.136 3.864 3 H 0.020 0.980 4 C -0.653 4.653 5 H 0.080 0.920 6 C -0.220 4.220 7 N -0.557 5.557 8 Si 0.945 3.055 9 H -0.190 1.190 10 H -0.210 1.210 11 H -0.205 1.205 12 N -0.358 5.358 13 C 0.277 3.723 14 O -0.480 6.480 15 C -0.171 4.171 16 C -0.081 4.081 17 H 0.080 0.920 18 C -0.148 4.148 19 C -0.106 4.106 20 H 0.079 0.921 21 C -0.203 4.203 22 C -0.133 4.133 23 C -0.063 4.063 24 C -0.192 4.192 25 C -0.202 4.202 26 C -0.134 4.134 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.230 0.770 32 H 0.112 0.888 33 H 0.130 0.870 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.086 0.914 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.867 -2.866 -16.942 17.205 hybrid contribution -1.152 0.077 -0.644 1.322 sum -0.285 -2.789 -17.587 17.809 Atomic orbital electron populations 1.21864 0.96558 1.00645 0.99671 1.18625 0.91488 0.92538 0.83731 0.98040 1.22431 1.04511 1.26413 1.11909 0.92049 1.27452 0.93527 0.94386 1.06607 1.70813 1.39193 1.31419 1.14280 0.82864 0.76057 0.75726 0.70883 1.18968 1.20996 1.20493 1.47250 1.64915 1.13944 1.09722 1.21529 0.77338 0.87388 0.86055 1.90560 1.53292 1.18046 1.86144 1.21813 1.03329 0.99836 0.92113 1.20843 0.99247 0.94705 0.93339 0.92047 1.21656 0.97996 0.96965 0.98146 1.21099 0.98941 0.95499 0.95082 0.92128 1.21809 0.98897 0.98498 1.01052 1.21621 0.98397 0.97105 0.96191 1.20523 0.95367 0.95138 0.95260 1.21809 1.01530 1.00043 0.95866 1.21964 0.96287 1.00670 1.01233 1.21637 1.01987 0.97340 0.92428 0.92434 0.92765 0.95240 0.93063 0.76973 0.88769 0.87029 0.94236 0.93189 0.91240 0.94625 0.92647 0.91868 0.91103 0.92136 0.92083 0.92378 0.93743 0.92113 0.92341 0.91424 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.76 9.46 71.98 0.68 -5.08 16 2 C 0.24 12.29 2.04 44.25 0.09 12.38 16 3 H 0.00 0.10 6.58 -2.39 -0.02 0.08 16 4 C -0.61 -32.97 8.50 25.60 0.22 -32.75 16 5 H 0.06 3.18 7.82 -2.91 -0.02 3.16 16 6 C -0.02 -1.00 5.45 84.65 0.46 -0.54 16 7 N -0.92 -55.94 13.56 21.45 0.29 -55.64 16 8 Si 1.12 48.09 29.91 68.60 2.05 50.14 16 9 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 10 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 12 N -0.71 -31.72 5.01 -446.10 -2.24 -33.96 16 13 C 0.49 20.84 7.51 87.66 0.66 21.49 16 14 O -0.60 -30.10 13.63 -3.03 -0.04 -30.14 16 15 C -0.13 -4.00 5.17 29.85 0.15 -3.85 16 16 C -0.06 -1.78 1.56 -10.79 -0.02 -1.80 16 17 H 0.06 1.97 6.24 -2.39 -0.01 1.96 16 18 C -0.11 -3.53 4.22 30.59 0.13 -3.40 16 19 C -0.09 -2.30 2.45 -10.79 -0.03 -2.32 16 20 H 0.06 1.70 6.43 -2.39 -0.02 1.68 16 21 C -0.15 -3.65 9.19 71.98 0.66 -2.98 16 22 C -0.10 -1.93 4.01 30.60 0.12 -1.81 16 23 C -0.06 -1.18 0.77 -52.17 -0.04 -1.22 16 24 C -0.14 -1.96 8.47 71.98 0.61 -1.35 16 25 C -0.14 -2.82 7.78 71.98 0.56 -2.26 16 26 C -0.10 -2.02 4.02 30.61 0.12 -1.89 16 27 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 28 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.26 16.45 6.93 -92.71 -0.64 15.81 16 31 H 0.40 15.98 8.59 -92.71 -0.80 15.18 16 32 H 0.09 2.72 8.14 -2.38 -0.02 2.70 16 33 H 0.11 2.75 8.14 -2.38 -0.02 2.73 16 34 H 0.04 1.64 5.95 -2.39 -0.01 1.63 16 35 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.04 1.06 4.81 -2.39 -0.01 1.05 16 45 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 48 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -66.80 363.94 4.69 -62.11 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: 0.24 Total: 34.87 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: 4.39 Total: -27.39 kcal Atomic # 7 Polarization: -87.66 SS G_CDS: -1.94 Total: -89.60 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.04 Total: -30.14 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.05 Total: 50.14 kcal Total: -66.80 4.69 -62.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066642313.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.201 kcal (2) G-P(sol) polarization free energy of solvation -66.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds